BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486939
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01380.1 | Symbols: | Homeodomain-like superfamily protein ... 1668 0.0
> AT5G01380.1 | Symbols: | Homeodomain-like superfamily protein
| chr5:155639-157601 REVERSE LENGTH=1267
Length=1267
Score = 1668 bits (903), Expect = 0.0
Identities = 1132/1232 (92%), Gaps = 57/1232 (5%)
Strand=Plus/Plus
Query 1 CTCTGTCTTCTCTTCtttttttCAATGAAACCTCTCTTCATTTATAA-T----------- 48
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 27 CTCTGTCTTCTCTTCTTTTTTTCAATGAAACCTCTCTTCATTTATAAGTAACCCAACAAA 86
Query 49 ----T--AA--ATCTCCCTCTTATTTC-TCT-TT-ACGTCACAAAGACAATTCGATTCC- 96
| || |||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 87 AAAATAAAATTATCTCCCTCTTATTTCTTCTCTTCACGTCACAAAGACAATTCGATTCCA 146
Query 97 AACAATGGATCGACGTAATCCTTTCCAACATCACCACCACCACCATCAGCTTCATCATCA 156
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 147 AATAATGGACCGACGTAACCCTTTCCAACATCACCACCACCACCATCAGCTTCATCATCA 206
Query 157 CTTGATCCAACAGCAACAGC-T--TCCGCCGCCGCAAAGCACGACGGCGGCGATGGATCC 213
|||||||||||||||||||| | ||||||||||| ||||| |||||| ||||||||||
Sbjct 207 CTTGATCCAACAGCAACAGCTTCCTCCGCCGCCGCTGAGCACCACGGCGACGATGGATCC 266
Query 214 CGGCGGAGGAGG-TGA--T---CAGAGAATCCCACAGTGGGGCATAGAGGAGACAAAGGA 267
|||||||||||| || | ||||||||||||||||| |||||||||||||||||||
Sbjct 267 CGGCGGAGGAGGAGGAGGTGGGGAGAGAATCCCACAGTGGAGCATAGAGGAGACAAAGGA 326
Query 268 GCTTTTGGCTATAAGAGAAGAACTTGATCAGACTTTCATGGAGACCAAACGTAATAAGCT 327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 327 GCTTTTGGCTATAAGAGAAGAACTTGATCAAACTTTCATGGAGACCAAACGTAATAAGCT 386
Query 328 TCTTTGGGAAGTCGTGGCTGCTAAGATGGCCGACAAGGGTTTTGTCCGGAGCGCAGAACA 387
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 387 TCTTTGGGAAGTCGTGGCTGCTAAGATGGCCGACAAGGGTTTTGTCCGAAGCGCAGAACA 446
Query 388 ATGTAAGAGCAAGTGGAAGAACCTCGTCACCAGATACAAGGCGTGTGAGACCTCTGAGCC 447
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 447 ATGTAAGAGCAAGTGGAAGAACCTCGTCACTAGATACAAGGCGTGTGAGACCACTGAGCC 506
Query 448 AGATGCTATTAGGCAGCAGTTCCCATTCTACAATGAGATTCAGTCGATTTTCGCAGGAAG 507
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 507 AGATGCTATTAGGCAGCAGTTCCCATTCTACAATGAGATTCAGTCGATTTTTGAAGCAAG 566
Query 508 AATGCAAAGAATGTTGTGGTCAGAAGCCACAGAACCAAGCACTTCCTCCAAGAGAAAGCA 567
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 567 AATGCAAAGAATGCTGTGGTCAGAAGCCACAGAACCAAGCACTTCCTCGAAGAGAAAACA 626
Query 568 TCATCAATTTTCATCTGATgaagaagaagaagaagaagTTGACGAGCCAAATCAAGACAT 627
||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct 627 TCATCAATTTTCATCTGAT---GATGAAGAAGAAGAAGTTGACGAACCAAATCAAGATAT 683
Query 628 CAACGAGGAATTATTGTCTTTAGTAGAGACACA-AAAGAAAGAGACAGAAGTGATTACTA 686
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 684 CAACGAGGAATTATTGTCTTTAGTAGAGACACAGAAA-AGAGAGACAGAAGTGATTACTA 742
Query 687 CTAGTACTTCGACCAATCCAAGAAAACGTGCGAAAAAAGGAAAAGGCGTTGCAAGTGGTA 746
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 743 CTAGTACTTCGACCAATCCAAGAAAACGTGCAAAAAAAGGAAAAGGCGTTGCGAGTGGTA 802
Query 747 TGAAAGCTGAAACGGCGGGTAATACATTAAAAGATATATTGGAGGATTTTATGAGGCAAA 806
|||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 803 CGAAAGCTGAAACTGCGGGTAATACACTAAAAGATATATTGGAGGAGTTTATGAGGCAAA 862
Query 807 CAGTgaagatggagaaggaatggagagatgcatgggagatgaaggagatagagagggaga 866
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 CGGTGAAGATGGAAAAGGAATGGAGAGATGCATGGGAGATGAAGGAGATAGAGAGGGAGA 922
Query 867 agagagagaaagagtggcggaggagaatggcggagctagaggaggagagagccgccgctg 926
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 923 AGAGAGAGAAAGAGTGGCGGAGGAGAATGGCGGAGCTAGAGGAGGAAAGAGCCGCCACAG 982
Query 927 agaggaggtggatggagagagaggaagagagacggttgagagaagaagctagggctcaga 986
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 AAAGGAGGTGGATGGAGAGAGAGGAAGAGAGACGGTTGAGAGAAGAAGCTAGGGCTCAGA 1042
Query 987 agagagaTTCTCTCATTGATGCTTTGCTTAATAGGCTTAATAGAGATCATAATGATGATC 1046
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 AGAGAGATTCTCTCATCGATGCTTTGCTTAATAGGCTTAATAGAGATCATAATGATGATC 1102
Query 1047 AT-A-A-TCAAGGTTTCTAATTTTTAATTATTTGTTTTAAGCATAAGTTAATT---T-GT 1099
|| | | ||||||||||||| || | ||||||||| ||||||||||||||||| | ||
Sbjct 1103 ATCATAATCAAGGTTTCTAAGTTCTCATTATTTGTGTTAAGCATAAGTTAATTAGCTAGT 1162
Query 1100 TA----G---G-CAAATCAATTTAGATAATAT--CTAAATTAATGTTTGTTTTATTA-AT 1148
|| | | |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 1163 TAATTTGTTAGGCAAATCAATTTAGATAATATATCTAAATTAATGTTTGTTTTATAATAT 1222
Query 1149 T-ATATGAACTATTGAAATTTCGAAAAAGAAA 1179
| |||||||||||||||||||| |||||||||
Sbjct 1223 TTATATGAACTATTGAAATTTCCAAAAAGAAA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5