BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486946
Length=2697
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-1289... 3199 0.0
> AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
FORWARD LENGTH=2739
Length=2739
Score = 3199 bits (1732), Expect = 0.0
Identities = 1959/2069 (95%), Gaps = 14/2069 (1%)
Strand=Plus/Plus
Query 625 AAAGCGAAGCAGATAGTGGTTCTTCTGATTGGTCCGCCAGGAAGCTGCAAATCGACGTTT 684
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 670 AAAGCGAAGCAGATAGTGGTGCTTCTGATTGGTCCACCAGGAAGCGGCAAATCGACGTTT 729
Query 685 TGTGACACTGTAATGCGTTCCTCTCACCGCCCTTGGTCTCGTATTTGCCAGGACATTATT 744
|||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 730 TGTGACACCGCAATGCGTTCCTCTCACCGCCCTTGGTCTCGTATCTGCCAGGACATTGTT 789
Query 745 AACAATGGGAAAGCTGGAACAAAGGCTCAGTGTTTAAAGATGGCAACAGAATCCCTTAGG 804
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 790 AACAATGGCAAAGCTGGAACAAAGGCTCAGTGTTTAAAGATGGCTACAGATTCTCTTAGG 849
Query 805 GAAGGAAAGAGCGTCTTTATAGACAGATGCAATCTTGACAGGGAGCAACGCTCGGAGTTT 864
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 850 GAAGGCAAGAGCGTCTTTATAGACAGATGCAATCTTGACAGGGAGCAACGTTCAGAGTTT 909
Query 865 ATTAAGCTCGGTGGTCCTGGCA-TT-GAAGTTCATGCAGTGGTTCTGGAGCTTTCTGCTC 922
|||||||| ||||||||| | | || ||||||||||||||||||||||||||| ||||||
Sbjct 910 ATTAAGCTTGGTGGTCCT-G-AGTTCGAAGTTCATGCAGTGGTTCTGGAGCTTCCTGCTC 967
Query 923 AGGTTTGTATATCTAGATCAGTCAAAAGAACTGGTCATGAAGGAAATCTACAAGGGGGAC 982
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 968 AGGTTTGTATATCTAGATCAGTTAAAAGAACTGGTCATGAAGGAAATCTACAAGGTGGAA 1027
Query 983 GAGCTGCAGCTGTTGTGAATAAGATGCTTCAGAGTAAGGAACTTCCGATGGTGAATGAAG 1042
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1028 GAGCTGCAGCTGTTGTGAATAAGATGCTTCAGAGTAAGGAACTTCCCAAAGTGAATGAAG 1087
Query 1043 GGTTTTCTCGGATTATGTTTTGTTACAACGACGCGGATGTTGAAAATGCTGGTAACACAT 1102
||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||| |
Sbjct 1088 GGTTTTCTCGGATTATGTTTTGTTACAGTGACGCTGATGTTGATAATGCTGTTAACATGT 1147
Query 1103 ACAACAAGCTTGGTCCAATGGATACTCTTCCTTCTGGCTGTTTTGGCGaaaaaaaaTCAG 1162
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1148 ATAACAAGCTTGGTCCAATGGATACCCTTCCTTCTGGCTGTTTTGGCGAAAAAAAATTAG 1207
Query 1163 ACACTAAAAGCCAACCCGGTATAATGAAGTTCTTTAAGAAAGTCAATGCTCTGCCTGGTT 1222
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1208 ATACTAAAAGCCAACCCGGTATAATGAAGTTCTTTAAGAAAGTCAGTGCTCTGCCTGCTT 1267
Query 1223 CATCTTCTAATGAAGCTGCTAACGCAACAC-AAAACGATAATGAAAAGACTAG-AAATGT 1280
||||||||||||||||| ||||| |||| | ||| | | |||||| ||| || ||||||
Sbjct 1268 CATCTTCTAATGAAGCTACTAACACAACTCGGAAA-GCTGATGAAATGAC-AGCAAATGT 1325
Query 1281 TAGAGTTTCGCCAGCCAAGCTTGGTTCTGCTGATATTGTTCCTACACTGGCTTTCCCATC 1340
|||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1326 CCGAGTTTCGCCAGTCAAGCTTGGTTCTGCTGATATTGTACCTACACTGGCATTCCCATC 1385
Query 1341 CATTTCGACTGCGGATTTTCAGTTTGATCTTGAAAAGGCATCTGATATCATTGTCGAGAA 1400
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1386 AATTTCGACTGCGGATTTTCAGTTTGATCTTGAAAAGGCTTCTGATATCATTGTGGAGAA 1445
Query 1401 AGCAGAGGAATTCTTGCCTAAACTTGGGACTGCACGTCTTGTCTTGGTAGACTTGAGCCA 1460
||||||||| |||||| |||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1446 AGCAGAGGAGTTCTTGTCTAAACTTGGGACTGCGCGTCTCGTCTTGGTGGACTTGAGCCG 1505
Query 1461 AGGGTCAAAGATTCTGTCTCTGGTCAAAGCTAAGGCTGCTCAGAAGAACATTGACTCAGC 1520
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 1506 CGGGTCAAAGATTCTATCTCTGGTCAAGGCTAAGGCTTCTCAGAAGAACATTGATTCAGC 1565
Query 1521 GAGATTCTTCACATTTGTCGGGGACATAACTAAGCTTCGTTCCGAAGGTGGTCTACACTG 1580
|| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1566 GAAATTCTTCACATTTGTTGGGGACATAACTAAGCTTCGTTCTGAAGGTGGTCTACACTG 1625
Query 1581 CAATGTTATAGCTAATGCTACTAACTGGCGGCTTAAACCTGGAGGTGGAGGTGTGAATGC 1640
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 TAATGTCATAGCTAATGCTACTAACTGGCGGCTTAAACCTGGAGGTGGAGGTGTGAATGC 1685
Query 1641 AGCAATATTCAAAGCTGCTGGTCCAGATCTTGAGGCTGCGACAAGAGTACGAGCAAACAC 1700
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1686 AGCAATATTCAAAGCTGCTGGTCCAGATCTTGAGACTGCGACAAGAGTACGAGCAAACAC 1745
Query 1701 TCTTCTTCCTGGAAAAGCCGCGGTAGTTCCTCTTCCTTCTACTTGTCCATTACACAATGC 1760
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1746 TCTTCTTCCTGGAAAAGCCGTGGTAGTTCCTCTTCCTTCTACTTGTCCATTACACAATGC 1805
Query 1761 AGAAGGAATTACACATGTCATACATGTTCTAGGACCAAACATGAACCCAAACCGACCAGA 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 AGAAGGAATTACACATGTCATACATGTTCTAGGACCAAACATGAACCCAAACCGACCAGA 1865
Query 1821 CAACCTTAACAACGACTACACCAAGGGGTGCAAAACTCTCCGGGAGGCTTACACATCTCT 1880
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1866 CAACCTTAACAACGACTACACCAAGGGGTGCAAAACTCTCCGGGAAGCTTACACATCTCT 1925
Query 1881 ATTTGAAGGTTTTCTATCAGTAGTACAGGATCAATCAAAGTTGCCTAAACGAAGCAATCA 1940
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 1926 ATTTGAAGGTTTTCTATCAGTAGTACAGGATCAATCGAAGTTGCCCAAACGAAGCAGTCA 1985
Query 1941 AACAGC-GTTGTCAGATTCTGGTGAGGATATTAAGGAAGACTCTGAGAGAAACAAAAAGT 1999
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 AACAGCTGT-GTCAGATTCTGGTGAGGATATTAAGGAAGACTCTGAGAGAAACAAAAAGT 2044
Query 2000 ACAAAGGATCACAAGATAAGGCCGTAACTAATAATTTGGAATCAGGGTCTCTGGAGGATA 2059
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2045 ACAAAGGATCACAAGATAAGGCCGTAACTAATAATTTGGAATCAGAGTCTCTGGAGGACA 2104
Query 2060 CAAGAGACAGTGGAAAGAAGATGAGTAAAGGGTGGAGCACATGGGCATTGGCTCTCCACA 2119
|||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2105 CAAGAGGCAGTGGAAAGAAGATGAGTAAAGGATGGAACACATGGGCATTGGCTCTCCACA 2164
Query 2120 GCATCGCGATGCACCCAGAGAGACACGAGAATGTCGTGCTAGAAT-TTTCAGACAACATC 2178
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 2165 GCATCGCGATGCACCCAGAGAGACACGAGAATGTCGTGCTTGAATATTT-AGACAACATC 2223
Query 2179 GTTGTGATAAACGACCAGTACCCAAAGGCGCGGAAACACGTGCTAGTACTGGCGAGACAG 2238
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2224 GTTGTCATAAACGACCAGTACCCAAAGGCGCGGAAACACGTGCTAGTACTGGCGAGACAG 2283
Query 2239 GAGAGTCTAGATGGGCTAGAAGATGTTCGCAAAGAGAATCTTCAACTTCTGCAGGAAATG 2298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2284 GAGAGTCTAGATGGGCTAGAAGATGTTCGCAAAGAGAATCTTCAACTTCTGCAGGAAATG 2343
Query 2299 CACAATGTTGGTCTGAAATGGGTAGATAGATTCCAGAACGAGGATGCATCTCTTATCTTC 2358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2344 CACAATGTTGGTCTGAAATGGGTTGATAGATTCCAGAACGAGGATGCATCTCTTATCTTC 2403
Query 2359 CGCCTTGGATATCACTCGGTTCCGTCGATGCGACAACTACACTTACACGTTATAAGCCAA 2418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2404 CGCCTTGGATATCACTCGGTTCCCTCGATGCGACAACTACACTTACACGTTATAAGCCAA 2463
Query 2419 GACTTTGATTCAGATAGTTTGAAGAACAAAAAACACTGGAACTCTTTCAC-ATCCTCGTT 2477
|||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 2464 GACTTTAATTCAGATAGTTTGAAGAACAAGAAACACTGGAACTCTTTCACGA-CCTCGTT 2522
Query 2478 CTTTCGTGACTCAGTTGATGTACTTGAAGAGGTCAAGAGCCAAGGCAAGGCCAATGTGGC 2537
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2523 CTTCCGTGACTCAGTTGATGTACTTGAAGAGGTCAACAGCCAAGGCAAGGCCAATGTGGC 2582
Query 2538 GAGCGAAGATCTGTTGAAAGGTGAGCTGCGTTGCAATCGGTGTAGAAGCGCACACCCAAA 2597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2583 GAGCGAAGATCTGTTGAAAGGTGAGCTGCGTTGCAATCGGTGTAGAAGCGCACACCCAAA 2642
Query 2598 TATTCCCAAACTCAAATCACATGTTAGAAACTGTCGTTCTCAGTTTCCTGACCATCTACT 2657
|||||| ||||| ||||||||||| |||| ||| | |||||| ||||| |||||| ||||
Sbjct 2643 TATTCCAAAACTTAAATCACATGTCAGAAGCTGCCATTCTCAATTTCCAGACCATTTACT 2702
Query 2658 CCAAAACAATCGCCTTGTGGCTCGACCAG 2686
|||||||||||||||||||||| || |||
Sbjct 2703 CCAAAACAATCGCCTTGTGGCTAGAGCAG 2731
Score = 737 bits (399), Expect = 0.0
Identities = 495/541 (91%), Gaps = 7/541 (1%)
Strand=Plus/Plus
Query 1 ATGGATGATTTTAATCTTCGTGGCCAAAACCCTAATTCATCATCCGCCACTTCCTCATCC 60
||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGATGATTTCAATCTTCGTAGCGAAAACCCTAATTCATCATCCACCACTTCCTCATCC 60
Query 61 TCTTCTTCTTTGCACGGTCACAAGAGCGAAACCGGAAACACAAAACGGTCAAGATCAACG 120
||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCTTCCTCTTTCCACCGTCACAAGAGCGAAACCGGAAACACAAAACGGTCAAGGTCAACG 120
Query 121 TCCACGTTATCAACGGACCCTCAGAGCGTGGCGGCTCGTGAGAGACGGCACCGAATCAGC 180
||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 121 TCCACGTTATCGACGGACCCTCAGAGCGTGGCGGCTCGCGACAGACGGCACCGAATTAGC 180
Query 181 GAGCGTTTCAAGATTCTACAAAGCATGGTCCCTGGTGGTGCGAAGATGGACACTGTCTCT 240
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GACCGTTTCAAGATTTTACAAAGCATGGTCCCTGGTGGTGCGAAGATGGACACTGTATCT 240
Query 241 ATGCTTGAAGAAGCCATTAGGTACGTCAAGTTCTTGAAGGCTCAGATCTGGTTTCACCAA 300
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ATGCTTGACGAAGCCATTAGCTACGTCAAGTTCTTGAAGGCTCAGATCTGGTATCACCAA 300
Query 301 AACATGCTTCTCTTCCTAAACAACCACGAAACTACGTCATCTTGT--T-ACTCTCCCGGC 357
||||||||||||||| ||||| ||||||||||||| ||||||||| | |||||||||||
Sbjct 301 AACATGCTTCTCTTCATAAACGACCACGAAACTACATCATCTTGTACTTACTCTCCCGGC 360
Query 358 GCCGGAGAATTTGGACCAAAACTATTTGGTTATGATGACGATTATGCCCCTATAGTGGAG 417
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 361 GCTGGAGAATTTGGACCGAAACTCTTTGGTTATGATGACGATTATGCCCCTATAATGGAC 420
Query 418 ACAAATTCACAAGGCATGCCACTTACGGTTATGGACTCGGAGAATACGCCGTGGTTTGGT 477
||| ||||||||||| |||||||||||||| ||||||| || |||||||||||||||||
Sbjct 421 ACATATTCACAAGGCGTGCCACTTACGGTTGCGGACTCGAAGTATACGCCGTGGTTTGGT 480
Query 478 TCGGCTCATGATGAGCAAGAACGAATACGCCACGTATTCCAAACACACGCGTGTCACACG 537
|||| | ||||||||||||||| | || |||||||| |||| ||| ||||| ||||||
Sbjct 481 TCGGTTGATGATGAGCAAGAAC-A---CGTCACGTATTTCAAATACAGGCGTGCCACACG 536
Query 538 A 538
|
Sbjct 537 A 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133945737810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5