BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486948
Length=2759
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01270.2 | Symbols: CPL2 | carboxyl-terminal domain (ctd) ph... 3995 0.0
> AT5G01270.2 | Symbols: CPL2 | carboxyl-terminal domain (ctd)
phosphatase-like 2 | chr5:107646-112311 REVERSE LENGTH=2790
Length=2790
Score = 3995 bits (2163), Expect = 0.0
Identities = 2375/2476 (96%), Gaps = 20/2476 (1%)
Strand=Plus/Plus
Query 1 AAACCCTC-TTTAGCGGAGAGAAATCACAAAGAAAAGTAGC-----------GAAATTGA 48
|||||||| ||| ||||||| |||||||| ||||||||||| ||||||||
Sbjct 20 AAACCCTCATTT-GCGGAGAAAAATCACAGAGAAAAGTAGCGAAGTTTGAGAGAAATTGA 78
Query 49 ATCTGCAGATTTTCTCACGCATTTTCCCAGAAACTG-TTATCTTCACTACCTGATTCGTT 107
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 79 ATCTGCAGATTCTCTCACGCATTTTCCCAGAAACTGTTTATCTTCACTACCTGATTCGTC 138
Query 108 CTTCAGAAGTCTGAATTGAACGAATTTACGATGAGTCGTTTAGGTCATAAATCCGTGGTT 167
|||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 139 CTTCAGAAGTGTGAATTGAACGAATTCACGATGAATCGTTTGGGTCATAAATCCGTGGTT 198
Query 168 TATCACGGAGATTTGCGTTTGGGGGAACTTGATGTGAACCATGTATCTTCAAGTCATGAA 227
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TATCACGGAGATTTACGTTTGGGGGAACTTGATGTGAACCATGTATCTTCAAGTCATGAA 258
Query 228 TTTCGATTCCCGAACGATGAGATTCGAATCCACCATCTATCTCCGGCTGGTGAGAGATGT 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTTCGATTCCCGAACGATGAGATTCGAATCCACCATCTATCTCCGGCTGGTGAGAGATGT 318
Query 288 CCTCCGCTCGCGATTCTTCAGACGATTGCTTCTTTTGCCGTTAGATGCAAGCTTGAGTCA 347
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 319 CCTCCGCTCGCGATTCTTCAGACGATTGCTTCTTTTGCCGTTCGATGCAAGCTTGAGTCA 378
Query 348 TCGGCTCCGGTCAAACCTCAAGAGTTAATGCATCTACACGCAGTCTGTTTCCATGAATTG 407
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TCGGCTCCGGTGAAATCTCAAGAGTTAATGCATCTACACGCAGTCTGTTTCCATGAATTG 438
Query 408 AAGACTGCTGTGGTTTTGCTCGGAGATGAGGAGATTCATTTAGTGGCGATGCCGAGTAAG 467
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 AAGACTGCAGTGGTTATGCTCGGAGATGAGGAGATTCATTTAGTGGCGATGCCGAGTAAG 498
Query 468 GAGAAGAAGTTCCCGTGTTTTTGGTGTTTTTCGGTTCCTTCAGGTCTTTATGATTCCTGT 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 499 GAGAAGAAGTTCCCGTGTTTTTGGTGTTTTTCGGTTCCTTCAGGTCTTTATGATTCGTGC 558
Query 528 TTAAGGATGCTTAATACTCGGTGTTTGTCAATTGTGTTTGATCTGGATGAGACTTTGATT 587
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 559 TTAAGGATGCTTAATACTCGGTGTTTGTCTATTGTGTTTGATTTGGATGAGACTTTGATT 618
Query 588 GTTGCAAATACCATGAAGTCATTTGAGGATAGAATCGAGGCTCTTAAATCTTGGATTTCA 647
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GTTGCAAATACTATGAAGTCATTTGAGGATAGAATCGAGGCTCTTAAATCTTGGATTTCA 678
Query 648 CGAGAGATGGATCCTGTGAGGATTAATGGAATGTCAGCAGAACTTAAAAGGTATATGGAT 707
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 679 CGTGAGATGGATCCTGTGAGGATTAATGGGATGTCAGCAGAACTTAAAAGGTATATGGAT 738
Query 708 GATAGGATGCTGCTGAAGCAGTATATTGATAATGACTATGCATTTGATAACGGAGTTTTG 767
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 739 GATAGGATGCTGCTGAAGCAGTATATTGATAATGACTATGCTTTTGATAACGGAGTTTTG 798
Query 768 TTAAAGGCTCAACCTGAGGAGGTCCGCCCAACTTCTGATGGACTCGAGAAAGTTTATAGA 827
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct 799 TTAAAGGCTCAACCTGAGGAAGTCCGCCCAACTTCTGATGGACAAGAGAAAGTTTGTAGA 858
Query 828 CCCGTGATTAGATTGCCGGAAAAGAATACTGTGCTTACTCGAATTAATCCAGAGATCCGT 887
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 859 CCCGTGATTAGATTGCCGGAGAAGAATACTGTGCTTACTCGGATTAAGCCAGAGATCCGT 918
Query 888 GACACTAGTGTGCTTGTAAAACTGAGACCAGCGTGGGAGGAGTTGAGAAGTTATTTGACA 947
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 919 GACACTAGTGTGCTTGTAAAACTGAGACCAGCATGGGAGGAGTTAAGAAGTTATTTGACA 978
Query 948 GCCAAAACTAGGAAACGTTTTGAAGTTTACGTTTGTACCATGGCTGAAAGGGATTATGCT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GCCAAAACTAGGAAACGTTTTGAAGTTTACGTTTGTACCATGGCTGAAAGGGATTATGCT 1038
Query 1008 CTGGAAATGTGGAGACTACTTGATCCTGAAGCACACTTGATAAGTCTCAAGGAGCTTCGA 1067
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1039 CTGGAAATGTGGAGACTGCTTGATCCGGAAGCACACTTGATAAGTCTCAAGGAGCTTCGA 1098
Query 1068 GATCGTATTGTCTGCGTTAAACCAGACGCCAAGAAATCGTTGTTAAGTGTTTTCAATGGT 1127
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1099 GATCGTATCGTCTGCGTAAAACCAGACGCCAAGAAATCGTTGTTAAGTGTCTTCAATGGT 1158
Query 1128 GGCATATGCCACCCGAAAATGGCAATGGTCATTGATGACCGTATTAAGGTTTGGGAGGAC 1187
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1159 GGCATTTGCCACCCGAAAATGGCAATGGTCATTGATGACCGTATGAAGGTTTGGGAGGAC 1218
Query 1188 AAGGATCAACCACGGGTTCATGTTGTTCCTGCATATCTTCCTTATTATGCTCCACAAGCA 1247
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1219 AAGGATCAACCACGGGTTCATGTTGTTTCTGCATATCTTCCTTATTATGCTCCACAAGCA 1278
Query 1248 GAGGCATCCCTTCTCGTTCCA-ATTCTCTGCGTAGCAAGAAATGTTGCTTGCAATGTCAG 1306
||| || ||||| |||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1279 GAGACAGCCCTTGTCGTTCCACAT-CTCTGCGTAGCAAGAAATGTTGCATGCAATGTCAG 1337
Query 1307 AGGTTACTTTTTCAAGGAATTTGATGAGAGTTTAATGAGTAGTATATCTTTGGTTTACTA 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 AGGTTACTTTTTCAAGGAATTTGATGAGAGTTTAATGAGTAGTATATCTTTGGTTTACTA 1397
Query 1367 TGAAGATGATGTGGAAAATTTACCTCCATCACCAGATGTGAGCAACTATGTCGTTATAGA 1426
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1398 TGAAGATGATGTGGAAAATTTACCTCCATCACCGGATGTGAGCAACTACGTCGTTATAGA 1457
Query 1427 GGATCCTGGCTTTGCCTCAAATGGAAACATAAATGCTCCTCCAATGACCGAAGGAATGTG 1486
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1458 GGATCCTGGCTTTGCTTCAAATGGAAACATAAATGCTCCTCCAATTAACGAAGGAATGTG 1517
Query 1487 TGGGGGTGAAGTGGAACGCAGACTAAACCAATCGGCTGCAGCTGATCATTCTACTCTTCC 1546
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1518 TGGGGGTGAAGTGGAACGAAGACTAAACCAAGCGGCTGCAGCTGATCATTCTACTCTTCC 1577
Query 1547 TGCAACAAGTAACGCTGAGCAGAAACCTGAAACCCCTAAGCCGCAGATAGCAGTTATACC 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 TGCAACAAGTAACGCTGAGCAGAAACCTGAAACCCCTAAGCCGCAGATAGCAGTTATACC 1637
Query 1607 AAATAACGCAAGCACGGCAACTGCAGCAGCACTGTTACCTTCGCATAAACCTAGTTTGCT 1666
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1638 AAATAATGCAAGCACGGCAACTGCAGCAGCACTGTTACCTTCTCATAAACCTAGTTTGCT 1697
Query 1667 TGGAGCTCCTAGACGGGATGGCGTCACTTTTTCTGATGGTGGAAGACCCCTTATGATGAG 1726
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1698 TGGAGCTCCTAGGCGGGATGGCTTCACTTTTTCTGATGGTGGAAGACCCCTTATGATGAG 1757
Query 1727 GCCTGGTGTAGATATAAGGAACCAAAACTTTAATCAACCGCCCATTCTGGCTAAAATTCC 1786
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1758 GCCTGGTGTAGATATAAGGAACCAAAACTTTAATCAACCCCCCATTCTGGCTAAAATTCC 1817
Query 1787 TATGCAGCCACCTTCCTCTTCTATGCATTCTCAGGGTGGTTGGTTGGTAGATGATGAGAA 1846
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1818 TATGCAGCCACCTTCCTCGTCTATGCATTCTCCGGGTGGTTGGTTGGTAGATGATGAGAA 1877
Query 1847 TAGACCATCTTTTCCTGGTCGACCTTCAGGAATTTATCCAAGTCAATTTCCTCATGGAAT 1906
|||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1878 TAGACCTTCTTTTCCTGGTCGGCCTTCAGGACTTTATCCAAGTCAATTTCCTCATGGAAC 1937
Query 1907 ACCAGGTTATGCTCCTGTTGGTTCATTCGCACACCCATCCCACCTGAGGAGTGAAGAGGT 1966
|||||||| ||||||||||||| |||| ||||| ||||||||| ||||||||||||||||
Sbjct 1938 ACCAGGTTCTGCTCCTGTTGGTCCATTTGCACATCCATCCCACTTGAGGAGTGAAGAGGT 1997
Query 1967 ATCAATGGATGATGACCTGAAAAGGCAAAATCTTTCACGTCAAACAACAGAAGGTGGATT 2026
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1998 AGCAATGGATGATGACCTGAAAAGGCAAAATCCTTCACGTCAAACAACAGAAGGTGGAAT 2057
Query 2027 ATCCCAGAATCATTTGGTGTCAAATGGTAGAGAACATCATACAGATGGTGGAAAGAGTAA 2086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2058 ATCCCAGAATCATTTGGTGTCAAATGGTAGAGAACATCATACAGATGGTGGAAAGAGTAA 2117
Query 2087 TGGCGGGCAATCTCATTTATTTGTGAGTGCACTACAAGAAATTGGAAGAAGATGTGGTTC 2146
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2118 TGGCGGGCAATCTCATTTATTTGTGAGTGCACTGCAAGAAATTGGAAGAAGATGTGGTTC 2177
Query 2147 AAAGGTGGAGTATAGGACTGTGATAAGTACCAACAAAGAGTTACAGTTTTCAGTTGAGGT 2206
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2178 AAAGGTGGAGTTTAGGACTGTGATAAGTACCAACAAAGAGTTACAGTTTTCAGTTGAGGT 2237
Query 2207 TTTGTTCACGGGTGAGAAGATAGGCATTGGGATGGGAAAAACTAAGAAAGATGCACATCA 2266
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2238 GTTGTTCACGGGTGAGAAGATAGGCATTGGGATGGCAAAAACTAAGAAAGATGCACATCA 2297
Query 2267 ACAAGCGGCCGAGAATGCTCTTCGAAGTTTGGCTGAAAATTATGTTGCACATGTGGCACC 2326
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2298 ACAAGCGGCTGAGAATGCTCTTCGAAGTTTGGCTGAAAAGTATGTTGCACATGTGGCACC 2357
Query 2327 TCTATCTAGAGAAACAGCGAAAGATCCGGAAAATGATAATGGATTTTTGTGGGAAAGCAG 2386
|||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2358 TCTAGCTAGAGAAACAGAGAAAGGTCCGGAAAATGATAATGGATTTTTGTGGGAAAGCAG 2417
Query 2387 TGAAGATGGATCAAACAAAGGACTTGTAGAGGAAGCACCTAAAGAAAACATTTCAGAGTT 2446
|||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 2418 TGAAGATGTATCAAACAAAGGACTTGAAGAGGAAGCGCCTAAAGAAAACATTTCAGAGTT 2477
Query 2447 GTGAGTTTTGCAGAAA 2462
||||||| |||||
Sbjct 2478 ---AGTTTTG-AGAAA 2489
Score = 124 bits (67), Expect = 4e-27
Identities = 87/96 (91%), Gaps = 4/96 (4%)
Strand=Plus/Plus
Query 2664 AGTTTTGAGAAAGTGAGTATGAAACCTTGCACCCAAGGCTCCACCCACCTGAATTAGGCT 2723
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2478 AGTTTTGAGAAAGTGAGTATGAAACCTTGCACCCAAGGCTCCACCT-C---AATTAGGCT 2533
Query 2724 TTGTGTTATGTATAGTGATTGTATATTTTTCGTCTA 2759
|||| || |||||||||||||||||||| | |||||
Sbjct 2534 TTGTCTTGTGTATAGTGATTGTATATTTGTAGTCTA 2569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137056088276
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5