BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486951
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01250.1 | Symbols: | alpha 1,4-glycosyltransferase family ... 2150 0.0
> AT5G01250.1 | Symbols: | alpha 1,4-glycosyltransferase family
protein | chr5:102293-103770 REVERSE LENGTH=1478
Length=1478
Score = 2150 bits (1164), Expect = 0.0
Identities = 1357/1450 (94%), Gaps = 13/1450 (1%)
Strand=Plus/Plus
Query 1 TTAACTTTTCAAAACTAGACAGCCCCCAAAGGCAAGAACATGGTCAAAACAAGTTAAACA 60
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 8 TTAACTTTTCAAAACTAGACAGCCCCCAAAGACAAGAACGTGGTCAAAACAAGTTAAACA 67
Query 61 AGAAATAAAACAGACAGAGAAAGAAACTCAAAAGTGGCTTCTTTCTCATCTATCTAAAGC 120
|||||||||||||||| || |||||||||||||||| |||||||| ||| |||||||
Sbjct 68 AGAAATAAAACAGACACAG--AGAAACTCAAAAGTGGTTTCTTTCTTATCAATCTAAA-- 123
Query 121 TTTTCTCCTTCTCTTTTCTGGTTTCAAACTTCACAACATTTCAGTTCTGCCTTTATCATG 180
||||||| |||||||||||||| ||||||| ||||||||||||||| ||||| |||
Sbjct 124 ---TCTCCTTTTCTTTTCTGGTTTCCAACTTCAGAACATTTCAGTTCTGTGTTTATTATG 180
Query 181 GATCGTCATGATATAGAAAAGAGATTCACGGTGGTGATTGATAACAGACGACTAAACCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATCGTCATGATATAGAAAAGAGATTCACGGTGGTGATTGATAACAGACGACTAAACCAA 240
Query 241 TCTGGATCATCATCACTTTTCACCGGCTTCGCGATCAGCTCTATAACTCTGATCGTGGTT 300
|| |||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||
Sbjct 241 TCAGGATCATCATCACTTTTCACCGCCTTCGCTATCAGCTTTGTAACTCTGATCGTGGTT 300
Query 301 ACCACGTTTGCTCTAATGTCTAGTTTCTCGATGCAACCGCAAAGAGATTTCTCAGGGGTG 360
||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||| |||
Sbjct 301 ACCACGTTTACTCTAATTTCTAATTTCTCGATGCAACCGCATAGAGATTTCTCAGGAGTG 360
Query 361 AAGATAGATATCAAGAGAGTGATTCCACACTTACCTCTGAGCTCTGAGAAAGAAGGTGAA 420
|||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 361 AAGATAGAGATCAAGAGAGTGATTCCACACTTACCTCTGAGTTCTGAGAGAGAAGGTGAA 420
Query 421 AGAAGTGATCTGCTCAAGCAGCAGATACAAGTAAACGAGAAGCTCCAAGTTATCGAGGTT 480
||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |||
Sbjct 421 AGAAGTGATCTGCTCAAACAACAGACACAAGTAAACGAGAAGCTCCAAGTTATCGAAGTT 480
Query 481 TTTAGTGGAGATAACTTGTCTGACAAGTTTCAAAAGAGGGTAAATGAGTTTGTCGGTGAT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTCAGTGGAGATAACTTGTCTGACAAGTTTCAAAAGAGGGTAAATGAGTTTGTCGGTGAT 540
Query 541 GGATGTGAAGTCAACTTTATCATGACATGGATATCACCAGCAGAGTTCTTCGGCAATAGA 600
||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 541 GGATGCGAAGTCAACTTCGTCATGACATGGATATCACCAGCAGATTTCTTTGGCAATAGA 600
Query 601 GAGCTTTTAGCTATTGAAAGTGTCTTTAAATCTCATCCTTATGGTTGCTTGATGATCTTA 660
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 601 GAGGTTTTAGCTATTGAAAGTGTCTTTAAGTCTCATCCGTATGGTTGCTTGATGATCTTA 660
Query 661 TCCGCAACCATGGATTCTCCTCAAGGTTATACAGTTTTGAAGCCGTTTCTTGATCGTGGT 720
|||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct 661 TCCGCAACCATGGATTCTCCTCAAGGTTATGCAACTTTGAAGCCGTTTATTGATCGTGGT 720
Query 721 TACAAAGTTCTTGCAGTCACACCAGATTTACCTTTTCTACTCAAAGGAACCGCTGGTGAA 780
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct 721 TACAAAGTTCTTGCAGTCACACCAGATTTGCCTTTTCTGCTCAAAGGAACCGCGGGAGAG 780
Query 781 TCGTGGCTCGAGGAAATAAAGACCGGTAAAAGAGATCCCGGAAAGATTTCTTTAGCTCAG 840
| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 TTGTGGCTCGACGAAATAAAGAGCGGTAAAAGAGATCCCGGAAAGATTTCTTTAGCTCAG 840
Query 841 AATCTCTCAAATCTCATGAGGCTTGCTTACTTATACAAATATGGAGGTGTTTACTTAGAC 900
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 841 AATCTCTCAAATCTCATGAGGCTTGCTTACTTGTACAAATATGGAGGTGTGTACTTAGAC 900
Query 901 ACAGACATGATTATTCTAAAAAGCTTCAAAGGGCTTAGAAACGTGATTGGAGCACAAACA 960
|||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 901 ACAGACATGATTGTTCTAAAAAGCTTCAAAGGTCTGAGAAACGTGATTGGTGCACAAACA 960
Query 961 CTTGATCCTTCATCAACAAATTGGACAAGATTGAACAACGCGGTGCTAATATTCGACAAG 1020
||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||
Sbjct 961 CTTGATCCTTCATCAACGAATTGGACAAGACTAAACAACGCGGTACTAATATTCGACAAG 1020
Query 1021 AACCATCCTCTGCTACTCAAATTCATCGAAGAATTCGCGAAAACTTTCAATGGAAACATA 1080
|||||||||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 1021 AACCATCCTCTGTTACTCAAATTCATGGAAGAGTTCGCTAAAACTTTCAACGGAAACATA 1080
Query 1081 TGGGGATACAACGGACCATACCTTGTTTCCCGAGTGGCTAGAGCTGTGGAAGGATCAAGT 1140
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1081 TGGGGATACAACGGACCATACCTTGTTTCACGAGTGGCTAGAGCTGTAGAAGGATCAAGT 1140
Query 1141 GGTTATAACTTCACCGTCATGCGACCATCTGTGTTCTATTCGGTAAACTGGCTCGAGATT 1200
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGCTATAACTTCACCGTCATGCGACCATCTGTGTTCTATTCGGTAAACTGGCTCGAGATT 1200
Query 1201 AAGAAGTTGTTCAAAGTGGCTAAAACAGAGAAAGATTCGAAATGGGTCAAAATCAAGCTT 1260
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1201 AAGAAGTTGTTCAAAGTGCCTAAAACAGAGAAAGATTCGAAATGGGTCAAAACCAAGCTT 1260
Query 1261 CTTCATATGCGGAAGAGTGGCTATGGTTTGCATCTATGGAATAAGTTTAGCAGGAAATAT 1320
|||||||||| || || ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1261 CTTCATATGCAGAGGAATGGTTATGGTTTGCATCTGTGGAATAAGTTTAGCAGGAAATAC 1320
Query 1321 GAAATTGAACAAGGAAGTGCCATGTGGAAACTGGTTTCAGACCATTGCATTATCTGTGAA 1380
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1321 GAAATTGAACAAGGAAGTGCCATGTGGAAACTGGTTTCAGAGCATTGCATAATCTGTGAA 1380
Query 1381 ATTGGTTCTGCT-TC-T--TAGTCTATTGTTTGAATTTGTTCCATTAATC-CACATACTG 1435
||| |||||| | || | ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1381 ATTAGTTCTG-TATCATCATAGTCTATTGTTTGAATTTGTTCCATTAATCACACACACTG 1439
Query 1436 TAGATAACTT 1445
||||||||||
Sbjct 1440 TAGATAACTT 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71234573355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5