BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486953
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01240.1 | Symbols: LAX1 | like AUXIN RESISTANT 1 | chr5:978... 2614 0.0
AT1G77690.1 | Symbols: LAX3 | like AUX1 3 | chr1:29200941-29203... 556 2e-157
> AT5G01240.1 | Symbols: LAX1 | like AUXIN RESISTANT 1 | chr5:97894-101835
FORWARD LENGTH=2017
Length=2017
Score = 2614 bits (1415), Expect = 0.0
Identities = 1584/1662 (95%), Gaps = 25/1662 (2%)
Strand=Plus/Plus
Query 1 TTTTGATACTGTGCTCTGCTTCGGAGAGTGGAGAACGAGACCTAAAG-T--ACTCTCTGT 57
|||||||||||||||||||||||||||||| |||| |||| | | || | | |||||||
Sbjct 105 TTTTGATACTGTGCTCTGCTTCGGAGAGTGTAGAAAGAGA-C-AGAGCTAAAGTCTCTGT 162
Query 58 GTTTCTTCTTC-TCA-GACTAAAAGGAAAAAA-GAGAATCTATAGCTAATGTCGGGTGAG 114
|||||||| || || |||||||||||||||| || |||| || ||||||||||||||||
Sbjct 163 GTTTCTTC-TCAGCAGGACTAAAAGGAAAAAAGGA-AATCGATTGCTAATGTCGGGTGAG 220
Query 115 AAACAAGCGGAGGAGGCAATAGTGGTCTCCGGGGAGGATGAGGTGGCCGGTAGAAAAGTG 174
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 221 AAACAAGCGGAGGAGTCAATAGTAGTCTCCGGGGAGGATGAGGTGGCCGGTAGAAAAGTG 280
Query 175 GAAGATTCAGCGGCGGAGGAGGGTATTGACGGCAACGGCGGCGATGGATTTAGTATGAAG 234
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 281 GAAGATTCAGCGGCGGAGGAGGATATTGACGGCAACGGGGGCAATGGATTTAGTATGAAG 340
Query 235 AGCTTCCTCTGGCATGGCGGGTCCGCTTGGGACGCCTGGTTTAGCTGTGCATCAAATCAA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 AGCTTCCTCTGGCATGGCGGGTCCGCTTGGGACGCCTGGTTTAGCTGTGCATCAAATCAA 400
Query 295 GTGGCACAAGTGCTGTTGACGCTGCCGTATTCGTTCTCGCAGTTGGGAATGTTATCAGGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GTGGCACAAGTGCTGTTGACGCTGCCGTATTCGTTCTCGCAGTTGGGAATGTTATCAGGA 460
Query 355 ATATTGCTTCAAATATTCTATGGATTAATGGGATCTTGGACTGCTTATCTCATCAGTGTT 414
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 461 ATATTGCTTCAAATATTCTATGGGTTAATGGGATCTTGGACTGCTTATCTCATCAGTGTT 520
Query 415 CTTTACGTCGAATATCGTGCCCGTATGGAGAAACAAGAGGCCAAATCCTTCAAAAACCAC 474
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 521 CTTTACGTCGAGTATCGTGCCCGTATGGAGAAACAAGAAGCCAAATCCTTCAAAAACCAC 580
Query 475 GTTATTCAATGGTTTGAAGTGCTTGATGGGCTGCTGGGTCCGTACTGGAAAGCAGCGGGG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GTTATTCAATGGTTTGAAGTGCTTGATGGGCTGCTGGGTCCGTACTGGAAAGCAGCGGGG 640
Query 535 CTCGCATTTAATTGCACCTTCTTGTTATTCGGATCAGTCATCCAGCTCATTGCTTGTGCT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CTCGCATTTAATTGCACCTTCTTGTTATTCGGATCAGTCATCCAGCTCATTGCTTGTGCT 700
Query 595 AGCAATATATATTACATAAACGATAGGTTAGACAAGAGGACATGGACTTATATATTTGGT 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AGCAATATATATTACATAAACGATAGGTTAGACAAGAGGACATGGACTTATATATTTGGG 760
Query 655 GCTTGTTGTGCCACGACCGTTTTCATACCATCTTTCCACAATTACCGTATTTGGTCTTTC 714
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GCTTGCTGTGCCACGACCGTTTTCATACCATCTTTCCACAATTACCGTATTTGGTCTTTC 820
Query 715 CTCGGCCTTGGCATGACCACCTATACCGCTTGGTACCTCACCATCGCCGCATTTCTCCAT 774
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 821 CTCGGCCTTGGCATGACCACCTACACCGCTTGGTACCTCACCATCGCCTCTTTTCTCCAT 880
Query 775 GGTCAGGCGGAGGGTGTGACACATTCCGGTCCGACTAAGCTTGTGTTGTACTTCACCGGA 834
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 881 GGTCAGGCGGAGGGTGTGACACATTCCGGTCCAACCAAGCTTGTGTTGTACTTTACCGGA 940
Query 835 GCCACCAACATCCTCTATACCTTCGGCGGACACGCCGTGACTGTGGAAATAATGCATGCG 894
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 941 GCCACCAACATCCTCTATACCTTCGGTGGACACGCTGTGACCGTGGAAATAATGCATGCG 1000
Query 895 ATGTGGAAACCAAGGAAGTTTAAGAGCATCTACTTGATGGCAACTCTGTACGTCTTCACA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 ATGTGGAAACCAAGGAAGTTTAAGAGCATCTACTTGATGGCAACTCTGTACGTCTTCACA 1060
Query 955 TTAACGCTTCCGTCAGCCTCCGCCGTCTACTGGGCTTTCGGCGACCAACTTCTCAACCAC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TTAACGCTTCCGTCAGCCTCCGCCGTCTACTGGGCTTTCGGCGACCAACTTCTCAACCAC 1120
Query 1015 TCAAACGCTTTCTCTCTCCTCCCTAAAACGCGTTTCCGTGACACCGCTGTTATCCTCATG 1074
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1121 TCAAACGCTTTCTCTCTCCTCCCTAAAACGCGTTTCCGTGACACCGCCGTTATCCTCATG 1180
Query 1075 CTCATCCATCAGTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 CTCATCCATCAGTTTATAACGTTCGGGTTTGCGTGTACACCATTGTACTTCGTATGGGAA 1240
Query 1135 AAAGCGATCGGAATGCACCACACGAAGAGCTTATGTCTAAGAGCGCTGGTGAGGTTACCA 1194
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1241 AAAGCGATCGGAATGCACCACACAAAGAGCTTATGTCTAAGAGCGCTGGTGAGGCTACCG 1300
Query 1195 GTGGTGGTTCCGATATGGTTTTTGGCCATCATTTTTCCGTTTTTCGGGCCAATAAACTCG 1254
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1301 GTGGTGGTTCCGATATGGTTTTTGGCAATCATCTTTCCCTTTTTCGGGCCAATAAACTCG 1360
Query 1255 GCAGTTGGAGCCTTACTAGTTAGCTTCACCGTCTACATTATCCCTGCCTTAGCCCACATG 1314
||||||||||||||||| |||| |||||||||||| || |||||||||||||||||||||
Sbjct 1361 GCAGTTGGAGCCTTACTTGTTACCTTCACCGTCTATATCATCCCTGCCTTAGCCCACATG 1420
Query 1315 CTCACCTACCGCACCGCCTCTGCCCGCCGGAACGCGGCGGAGAAACCACCGTTCTTTATC 1374
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1421 CTCACGTACCGCACCGCCTCTGCCCGCCGGAACGCGGCGGAGAAACCACCGTTTTTTATC 1480
Query 1375 CCTAGCTGGGCCGGAGTTTACGTAATAAACGCTTTCATAGTGGTTTGGGTCCTAGTTCTC 1434
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCTAGCTGGGCTGGAGTTTACGTGATAAACGCTTTCATAGTGGTTTGGGTCCTAGTTCTC 1540
Query 1435 GGGTTCGGGTTTGGCGGATGGGCCAGCATGACCAACTTCATCAGGCAAATTGATACTTTT 1494
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1541 GGGTTCGGGTTTGGCGGATGGGCCAGTATGACCAACTTCATCAGGCAAATTGATACTTTT 1600
Query 1495 GGTCTCTTTGCCAAATGCTATCAATGCAAACCGCCACCAGCTCCAATCGCCGCCGGACCT 1554
|| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||| ||
Sbjct 1601 GGCCTCTTTGCCAAATGCTACCAATGCAAACCACCTCCAGCTCCGATCGCCGCCGGAGCT 1660
Query 1555 CACCACGGCCGTTA---A--G-A--CG---TGTGAAAGTGTGATTGAACCCTTTTTTCCC 1603
|||||| ||||||| | | | || ||||| ||||||||||||||||||||||
Sbjct 1661 CACCACCGCCGTTAGTTAACGTAAGCGACGTGTGATAGTGTGATTGAACCCTTTTTTCTT 1720
Query 1604 CT--TT-TGTATGAAAGAAAATATCTGTAATTCAGCGATTTA 1642
| || |||||||||||||||||||||||||||| ||||||
Sbjct 1721 -TAATTCTGTATGAAAGAAAATATCTGTAATTCAGTGATTTA 1761
> AT1G77690.1 | Symbols: LAX3 | like AUX1 3 | chr1:29200941-29203340
REVERSE LENGTH=1727
Length=1727
Score = 556 bits (301), Expect = 2e-157
Identities = 993/1320 (75%), Gaps = 75/1320 (6%)
Strand=Plus/Plus
Query 238 TTCCTCTGGCATGGCGGGTCCGCT-TGGGACGCCTGGTTTAGCTGTGCATCAAATCAAGT 296
||| |||||||||| || || | | | || || |||||||| ||||| |||||||| ||
Sbjct 138 TTCTTCTGGCATGGTGGTTCTG-TCTACGATGCTTGGTTTAGTTGTGCTTCAAATCAGGT 196
Query 297 GGCACAAGTGCTGTTGACGCTGCCGTATTCGTTCTCGC-AGTTGGGAATGTTATCAGGAA 355
||||||||| |||||||| | || || |||||||| | | ||||| ||| | || ||||
Sbjct 197 GGCACAAGTTCTGTTGACATTACCATACTCGTTCTCACAACTTGGG-ATGATGTCGGGAA 255
Query 356 TATTGCTTCAAATATTCTATGGATTAATGGGATCTTGGACTGCTTATCTCATCAGTGTTC 415
| ||| ||||| | || ||||||||||||||| |||||||||||||||||| |||||||
Sbjct 256 TTTTGTTTCAACTCTTTTATGGATTAATGGGAAGTTGGACTGCTTATCTCATTAGTGTTC 315
Query 416 TTTACGTCGAATATCGTGCCCGTATGGAGAAACAAGAGGCCAAA-TC--CTTCAAAAACC 472
||||||| |||||||| | |||| || ||| || | ||| || ||| ||||
Sbjct 316 TTTACGTTGAATATCGAACTCGTA--AAG-AAC--GA-GAAAAATTCGATTTCCGTAACC 369
Query 473 ACGTTATTCAATGGTTTGAAGTGCTT-GATGGGCTGCTGGGTCCGTACTGGAAAGCAGCG 531
|||||||||| |||||||| ||| || ||||| || |||| | ||| | | | |
Sbjct 370 ACGTTATTCAGTGGTTTGAGGTG-TTAGATGGATTGTTGGGGAAACATTGG-AGGAACCT 427
Query 532 GGGCTCGCA--TTTAATTGCAC-CTTCTTGTTATTCGGATCAGTCATCCAGCTCATTGCT 588
|| | | | ||||| ||||| ||||| | || ||||| || || ||||||||||||
Sbjct 428 TGGATTG-ATCTTTAACTGCACTTTTCTT-CTCTTTGGATCTGTTATTCAGCTCATTGCT 485
Query 589 TGTGCTAGCAATATATATTACATAAACGATAGGTTAGACAAGAGGACATGGACTTATATA 648
|||||||||||||||||||| || || || | || ||||||||||||||||| || |||
Sbjct 486 TGTGCTAGCAATATATATTATATTAATGACAAATTGGACAAGAGGACATGGACATACATA 545
Query 649 TTTGGTGCTTGTTGTGCCACGACCGTTTTCATACCATCTTTCCACAATTACCGTATTTGG 708
||||| || || ||||| || || ||||| || || || ||||||||||| | ||||||
Sbjct 546 TTTGGGGCGTGCTGTGCAACAACTGTTTTTATTCCTTCCTTCCACAATTATAGAATTTGG 605
Query 709 TCTTTCCTCGGCCTTGGC-ATGACCACCTATACCGCTTGGTACCTCACCATCGCCGCATT 767
|| |||||||| || | | |||||||| || || ||||||| |||||||| || || |
Sbjct 606 TCATTCCTCGGACTCG-CTATGACCACTTACACTTCTTGGTATCTCACCATTGCTTCACT 664
Query 768 TCTCCATGGTCAGGCGGAGGGTGTGACACATTCCGGTCCGACTA-AGCTTGTG-TTGTAC 825
|| ||||| ||||| |||| ||||| ||| || ||||| || | | | ||| || |||
Sbjct 665 CCTTCATGGCCAGGCTGAGGATGTGAAACACTCTGGTCCAACCACAA-TGGTGCTT-TAC 722
Query 826 TTCACCGGAGCCACCAACATCCTCTATACCTTCGGCGGACACGCCGTGACTGTGGAAATA 885
|||||||||||||||||||| ||||| ||||| || || |||||||| || ||||| |||
Sbjct 723 TTCACCGGAGCCACCAACATTCTCTACACCTTTGGTGGCCACGCCGTCACAGTGGAGATA 782
Query 886 ATGCATGCGATGTGGAAACC--AAGGAAGTTTAAGAGC-ATCTA-CTTGATGGCAACTC- 940
||||| || ||||||||||| || ||||| ||| || || || || | || || |
Sbjct 783 ATGCACGCTATGTGGAAACCGCAA--AAGTTCAAG-GCGATATATCTAC-TAGCGAC-CA 837
Query 941 TGTACGT-CTTCACATTAACGCTTCCGTCAGCCTCCGCCGTCTACTGGGC-TTTCGGCGA 998
| || || || || ||||||| || || || || || || || ||||| ||| |||||
Sbjct 838 TATATGTACTA-ACGCTAACGCTACCATCCGCGTCTGCGGTTTATTGGGCGTTT-GGCGA 895
Query 999 CCAA-CTTCTCAAC-CACTCAAACGCTTTCTCTCTCCTCCCTAAAAC-GCGTTTCCGTGA 1055
|| || || ||| || || || || ||||||| |||||||| || | |||| | ||
Sbjct 896 T-AAGCTACT-AACTCATTCCAATGCGCTCTCTCTTCTCCCTAAGACTG-GTTTTAGAGA 952
Query 1056 CACCGCTGTTATCCTCATGCTCATCCATCAGTTTATAACGTTCGGGTTTGCGTGTACACC 1115
||||| || |||||||||||||| ||||| |||||||||||||| || |||| ||||||
Sbjct 953 TACCGCAGTGATCCTCATGCTCATTCATCAATTTATAACGTTCGGATTCGCGTCTACACC 1012
Query 1116 ATTGTACTTCGTATGGGAAAAAGCGATCGGAATGCACCACACGAAGAGCTTATGT-CTAA 1174
|| || || || ||||| ||| ||| || |||| | ||||||||| |||| | ||
Sbjct 1013 GTTATATTTTGTGTGGGAGAAATTGATAGGTGTGCATGAGACGAAGAGC--ATGTTCAAA 1070
Query 1175 -GAGCGC-TGG-TGAGGTTACCAGTGGTGGTTCCGATATGGTTTTTGGCCATCATTTTTC 1231
|||| | ||| | || ||||| ||||| || || |||||||| || ||||| || || |
Sbjct 1071 AGAGC-CATGGCT-AGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATCTTCC 1128
Query 1232 CGTTTTTCGGGCCAATAAACTCGGCAGTTGGAGC-CTTACT-AGTTAGCTTCACCGTCTA 1289
| |||||||| ||||| || || || || ||| | || || |||||||||||| |||||
Sbjct 1129 CCTTTTTCGGACCAATCAATTCCGCGGTCGGATCTCT--CTTAGTTAGCTTCACTGTCTA 1186
Query 1290 CATTATCCCTGCCTTAGCCCACATGCTCACCTACCGCACC-GCCTC-TGCCCGCCG-GAA 1346
||| ||||| || || || || ||||| |||| || || || || | | | | |||
Sbjct 1187 CATCATCCCCGCATTGGCTCATATGCTTACCTTT-GCTCCTGC-TCCTTCAAGA-GAGAA 1243
Query 1347 CGCGGCGGAGAAACCACCGTTCTTTATCCCTAGC-TGGGCCGG-AGTTTAC-GTAATAAA 1403
|||| ||||| |||||| | | || ||| || | || || | | ||||
Sbjct 1244 TGCGGTGGAGAGGCCACCGAGAGTGGTAGG-AGGATGGATGGGGACTT-ACTGCA-TAAA 1300
Query 1404 CGC-TTTCATAGTGGTTTGGGTCCTAGTTCTCGGGTTCGGGTTTGGCGGATGGGCCAGCA 1462
| ||| | ||||||||||| | || | |||||||||||||| |||||||| || |
Sbjct 1301 CATATTTG-TGGTGGTTTGGGTATTCGTAGTTGGGTTCGGGTTTGGAGGATGGGCAAGTA 1359
Query 1463 TGACCAACTTCAT-CAGGCAAATTGATACTTTTGGTCTCTTTGCCAAATGCTATCAATGC 1521
|| |||||| | | | || || || ||||||||||||||| |||||||||| ||||||
Sbjct 1360 TGGTCAACTTTGTTC-GCCAGATCGACACTTTTGGTCTCTTTACCAAATGCTACCAATGC 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5