BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486954
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01230.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1707 0.0
> AT5G01230.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:92625-95701 REVERSE
LENGTH=1245
Length=1245
Score = 1707 bits (924), Expect = 0.0
Identities = 998/1033 (97%), Gaps = 7/1033 (1%)
Strand=Plus/Plus
Query 36 CTAGCTGCTGTATACTATCA-GTGAACCAACT-CTTAATTCTACTTTAGAGGACATGGGA 93
|||||||||||||||||| | ||||||||||| | | ||||||||||||||| |||||||
Sbjct 100 CTAGCTGCTGTATACTAT-ACGTGAACCAACTCCGT-ATTCTACTTTAGAGGCCATGGGA 157
Query 94 AAAGCTTCTCGAGACAAAAGGGATATCTACTATCGTAAAGCTAAAGAAGAAGGATGGCGT 153
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 158 AAAGCTTCTCGAGACAAAAGGGATATCTATTATCGTAAAGCTAAAGAAGAAGGATGGCGT 217
Query 154 GCGAGAAGTGCCTTTAAGCTTCTTCAGATTGATGAAGAATTCAATATTTTTGAAGGCGTG 213
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 218 GCAAGAAGTGCTTTTAAGCTTCTTCAGATTGATGAAGAATTTAATATTTTTGAAGGTGTG 277
Query 214 AAGAGGGTTGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGGTCTTGAGTCGTCAA 273
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AAGAGGGTCGTAGATTTATGTGCTGCACCTGGTAGCTGGAGTCAGGTCTTGAGTCGTCAA 337
Query 274 TTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAAGAAGGAGATCTTCCTCTTATAGTA 333
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 338 TTATATCTTCCTGCAAAGTCCTCAGCTGAGTCAAAAGATGGGGATCTTCCTCTTATAGTA 397
Query 334 GCCATAGATTTGCAGCCTATGGCTCCAATTGAAGGTGTCATCCAGGTCCAAGGGGACATA 393
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 398 GCCATCGATTTGCAGCCTATGGCTCCAATTGAAGGTGTCATCCAGGTTCAAGGGGACATA 457
Query 394 ACTAATGCTAGGACTGCTGAAGTGGTCATTAGACACTTCGACGGCTGCAAAGCGGACCTG 453
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 458 ACTAATGCTCGGACTGCTGAAGTGGTCATTAGACACTTTGACGGCTGCAAAGCGGACCTG 517
Query 454 GTTGTCTGTGATGGTGCACCAGATGTTACTGGTTTGCATGACATGGATGAATTTGTCCAG 513
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GTTGTCTGTGATGGTGCTCCAGATGTTACTGGTTTGCATGACATGGATGAATTTGTCCAG 577
Query 514 TCCCAACTCATACTAGCGGGTTTAACGATTGTAACCCATATTCTTAAAGAAGGTGGAAAA 573
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 578 TCCCAACTCATACTAGCAGGATTAACGATTGTAACTCATATTCTTAAAGAAGGTGGAAAA 637
Query 574 TTTATTGCAAAGATATTCCGCGGAAAAGATACAAGTCTCTTGTACTGTCAACTGAAGCTG 633
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 638 TTTATTGCAAAGATATTCCGTGGAAAAGATACAAGTCTCTTGTACTGTCAACTGAAATTG 697
Query 634 TTTTTCCCAACCGTAACTTTTGCGAAACCGAAAAGCAGCCGCAATTCGAGTATAGAGGCT 693
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 698 TTTTTCCCAACCGTAACTTTTGCGAAACCGAAAAGCAGCCGCAATTCAAGTATAGAGGCT 757
Query 694 TTTGCAGTCTGCGAGAATTACTCTCCGCCAGAAGGATTTAACCCGAGAGATCTGCATCGT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTTGCAGTCTGCGAGAATTACTCTCCGCCAGAAGGATTTAACCCGAGAGATCTGCATCGT 817
Query 754 CTCTTGGAGAAAGTTGGAAGCCCTTCAGGTGGAAGCGATCTCGATTGCAGTAGTGGTTGG 813
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 CTCTTGGAGAAAGTCGGAAGCCCTTCAGGTGGAAGCGATCTCGATTGCAGTAGTGGTTGG 877
Query 814 CTTGAAGGACCCAACAAAGTTTATATACCATTCTTGGCATGTGGTGACTTAACCGGTTAT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CTTGAAGGACCCAACAAAGTTTATATACCATTCTTGGCATGTGGTGACTTAACCGGTTAT 937
Query 874 GACTCAGACCGGTCTTACCCACTCCCTAAAGAAGCAGATGGATCATCATACCAGAGTTTG 933
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 938 GACTCAGACCGGTCTTACCCACTCCCTAGAGAAGCAGATGGATCATCATACCAGAGTTTG 997
Query 934 GACCCGATTCAACCTCCGATCGCACCGCCTTATAAACGAGCACTTGAACTCAAGAAAGCT 993
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 998 GACCCGATTCAACCTCCGATCGCACCGCCTTATAAACGAGCTCTTGAGCTCAAGAAAGCT 1057
Query 994 TCAGCACAAAGCTTCAACTCTTGAAG--G-TGATACCAAGAAAGAAAAAGAAACAAACTT 1050
|||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||
Sbjct 1058 TCAGCACAAAGCTTCAACTCTTGAAGAAGGTGATACCAAAAAAGAAAAAGGAACAAACTT 1117
Query 1051 TTCATTGGATTCT 1063
|||||||||||||
Sbjct 1118 TTCATTGGATTCT 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5