BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486956

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01225.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   536    5e-152


> AT5G01225.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G09032.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:91920-92324 FORWARD LENGTH=405
Length=405

 Score =  536 bits (290),  Expect = 5e-152
 Identities = 373/411 (91%), Gaps = 13/411 (3%)
 Strand=Plus/Plus

Query  1    ATGTCTCGAAGAACATCCAAAAGAGTAAGTTTTAGTCCGGACCCAGAAGCAAACGACGAA  60
            |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTCGAAGAGCATCCAAAAGAGTACGCTTTAGTCCGGACCCAGAAGCAAACGACGAA  60

Query  61   CTGGTCTTCCCAACACACACCTCATCACGGCATGGTCGGAGGAGGGTCGTTGTTGGAATT  120
            ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| 
Sbjct  61   CTGATCTTCCCAACACACAGCTCATCACGGCATGGTCGCAGGAGGGTCGTTGTTGGAATA  120

Query  121  TTCAGTTTCGG-TGTCAGTGACTCGACGGCAGC-A--AAGAGATTACTCCGGC-GTATTG  175
            ||||||||| | | ||||||||||| ||||| | |  |||||||||||||| | ||||||
Sbjct  121  TTCAGTTTCAGCT-TCAGTGACTCGCCGGCAACGACGAAGAGATTACTCCG-CAGTATTG  178

Query  176  GAGCCAGAGTTAGCAAAACGTTCCGTTATATATCATTCGGCAGGAAGAGTAATAACACCA  235
            ||| ||||||| |||||||||| |||||||||||||||||||||| ||  |    |||||
Sbjct  179  GAGACAGAGTTGGCAAAACGTTTCGTTATATATCATTCGGCAGGATGA--A----CACCA  232

Query  236  AAACGACGCCGTCATCTTCGAGAAACCTTTCCTCGTCTATTTATTTGATGAAGTCAAAGT  295
            ||||||| ||||||||||| || ||| |||| |||||| |||||||||||||||||||||
Sbjct  233  AAACGACACCGTCATCTTCCAGTAACGTTTCTTCGTCTCTTTATTTGATGAAGTCAAAGT  292

Query  296  CTCTAAACGAATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATCGAGTTCTTAA  355
            ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  293  CTCTAAACGGATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATTGAGTTCTTAA  352

Query  356  ACTCTTGTTCTTCTTTGTCGAGATCAAACTCGATCTCCACCTGGTCTTGCT  406
            ||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  353  ACTCTTGCTCTTCTTTGTCGAGATCAAACTCGATCTCTACCTGGTCTCGCT  403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5