BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486956 Length=406 Score E Sequences producing significant alignments: (Bits) Value AT5G01225.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 536 5e-152 > AT5G01225.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:91920-92324 FORWARD LENGTH=405 Length=405 Score = 536 bits (290), Expect = 5e-152 Identities = 373/411 (91%), Gaps = 13/411 (3%) Strand=Plus/Plus Query 1 ATGTCTCGAAGAACATCCAAAAGAGTAAGTTTTAGTCCGGACCCAGAAGCAAACGACGAA 60 |||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1 ATGTCTCGAAGAGCATCCAAAAGAGTACGCTTTAGTCCGGACCCAGAAGCAAACGACGAA 60 Query 61 CTGGTCTTCCCAACACACACCTCATCACGGCATGGTCGGAGGAGGGTCGTTGTTGGAATT 120 ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 61 CTGATCTTCCCAACACACAGCTCATCACGGCATGGTCGCAGGAGGGTCGTTGTTGGAATA 120 Query 121 TTCAGTTTCGG-TGTCAGTGACTCGACGGCAGC-A--AAGAGATTACTCCGGC-GTATTG 175 ||||||||| | | ||||||||||| ||||| | | |||||||||||||| | |||||| Sbjct 121 TTCAGTTTCAGCT-TCAGTGACTCGCCGGCAACGACGAAGAGATTACTCCG-CAGTATTG 178 Query 176 GAGCCAGAGTTAGCAAAACGTTCCGTTATATATCATTCGGCAGGAAGAGTAATAACACCA 235 ||| ||||||| |||||||||| |||||||||||||||||||||| || | ||||| Sbjct 179 GAGACAGAGTTGGCAAAACGTTTCGTTATATATCATTCGGCAGGATGA--A----CACCA 232 Query 236 AAACGACGCCGTCATCTTCGAGAAACCTTTCCTCGTCTATTTATTTGATGAAGTCAAAGT 295 ||||||| ||||||||||| || ||| |||| |||||| ||||||||||||||||||||| Sbjct 233 AAACGACACCGTCATCTTCCAGTAACGTTTCTTCGTCTCTTTATTTGATGAAGTCAAAGT 292 Query 296 CTCTAAACGAATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATCGAGTTCTTAA 355 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 293 CTCTAAACGGATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATTGAGTTCTTAA 352 Query 356 ACTCTTGTTCTTCTTTGTCGAGATCAAACTCGATCTCCACCTGGTCTTGCT 406 ||||||| ||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 353 ACTCTTGCTCTTCTTTGTCGAGATCAAACTCGATCTCTACCTGGTCTCGCT 403 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19202280118 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5