BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486958
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01210.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2246 0.0
AT5G01215.1 | Symbols: | other RNA | chr5:84307-85917 REVERSE ... 1079 0.0
> AT5G01210.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:84474-86275 FORWARD LENGTH=1802
Length=1802
Score = 2246 bits (1216), Expect = 0.0
Identities = 1385/1467 (94%), Gaps = 10/1467 (1%)
Strand=Plus/Plus
Query 2 AAATAAAATGCCTTCTTGTTCAGTAACAGGAATTTCAAAATGCATAGTTTATCCGGAGAA 61
||||||||||||||||||||| ||||| | |||||||||||| || || |||||||||||
Sbjct 74 AAATAAAATGCCTTCTTGTTCGGTAACTGAAATTTCAAAATGTATCGTCTATCCGGAGAA 133
Query 62 GAAGTCCACCGTCTCCGATCTCCGTCTCTCCGTCTCCGACCTCCCTATGCTCTCATGTCA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GAAGTCCACCGTCTCCGATCTCCGTCTCTCCGTCTCCGACCTCCCTATGCTCTCATGTCA 193
Query 122 TTACATTCAAAAAGGCGtcctcctctctc-gccctcctccttccttttccttcgacgacc 180
||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||
Sbjct 194 TTACATTCAAAAAGGCGTCCTCCTCAC-CAGCCCTCCTCCTTCCTTCTCCTTCGACGACC 252
Query 181 ttgtctcctctctccgccgttctctttcctccactctctctctTTTCCCTGCTTTAGCCG 240
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 253 TTGTCTCCTCTCTCCGCCGTTCTCTCTCCTCCACTCTTTCCCTCTTCCCTGCTTTAGCCG 312
Query 241 GACGTTTCTCCACCAGTCCCGCCGGTCACATTTCCATAGTCTGCAACGACGCGGGCGTTG 300
| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 313 GCCGTTTCTCCACCACTCCCGCCGGTCACATTTCCATTGTCTGCAACGACGCCGGAGTTG 372
Query 301 ATTTCGTCGCCGCTTCTGCTAAACACGTCAAAGTCTCCGACGTTCTCTTACCAGATAAAG 360
|||||||||||||||| ||||||||||||||| |||| || ||||||||||||| | |||
Sbjct 373 ATTTCGTCGCCGCTTCCGCTAAACACGTCAAACTCTCTGATGTTCTCTTACCAGGTGAAG 432
Query 361 ACGTTCCGCTTCTCTTCCGTGAGTTTTTCGTCTTCGAACGTCTCGTTAGTTATAACGGTC 420
||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 433 ACGTTCCTCTGCTTTTCCGTGAGTTTTTCGTCTTCGAGCGTCTCGTTAGTTACAACGGTC 492
Query 421 ATCATAAGCCTCTCGCCGCCGTTCAAGTGACGGAGCTCGACGACGGTGTTTTCATCGGAT 480
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 493 ATCATAAGCCTCTCGCCGCCGTTCAAGTGACGGAGCTCCACGACGGTGTCTTCATCGGAT 552
Query 481 GTACCGTGAATCATTCCGTAACTGACGGAACTTCCTTTTGGCACTTCTTCAACACCTTCG 540
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 553 GTACCGTGAATCATTCCGTTACTGACGGAACTTCCTTCTGGCACTTCTTCAACACCTTTG 612
Query 541 CTGACGTCACTAGCGGTGCTTGTAAGATCAAACACCTTCCAGATTTCTCCCGCCACACCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CTGACGTCACTAGCGGTGCTTGTAAGATCAAACACCTTCCAGATTTCTCCCGCCACACCG 672
Query 601 TCTTCGATTCTCCGG-CTGTTCTACGAGTCCCTCCCGGTGGTCCACGTGTCACTTTCGAT 659
||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||
Sbjct 673 TCTTCGATTCTCCGGTC-GTTCTTCCAGTCCCTCCCGGTGGTCCACGTGTCACTTTCGAC 731
Query 660 GCCGATCAGCCTCTCCGGGAGAGAATTTTTCATTTCAGCAGAGAGGCGATTACGAAACTG 719
||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 732 GCCGACCAACCTCTACGGGAGAGAATTTTTCATTTCAGCAGAGAGGCGATTACCAAACTG 791
Query 720 AAACAGAGGACGAATAACAGAGTTAACGGAATTGAGCCTGCTGTTAACGACGGAAGGAAA 779
|||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 792 AAACAGAGGACGAATAACAGAGTTAACGGAATTGAGACTGCCGTTAACGATGGAAGGAAA 851
Query 780 TGTAACGGTAACAGAGAGATTAACGGAAAAATAACAACCGTTTTGGATAGTTTTTTGAAT 839
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TGTAACGG-A---GAGA--TTAACGGAAAAATAACAACCGTTTTGGATAGTTTTTTGAAT 905
Query 840 AATAAGAAGACTCATGATCGGACGGCTGAGATTTCATCGTTCCAATCACTCAGTGCTCAG 899
|||||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 906 AATAAGAAGAGTTATGATCGGACGGCTGAGATTTCATCGTTCCAATCTCTCAGCGCTCAG 965
Query 900 CTATGGCGATCCGTCACGCGATCGAGGAATCTCGATCCGAGCAAGACGACGACGTTTCGA 959
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 966 CTATGGCGATCCGTTACACGAGCGAGGAATCTCGATCCGAGCAAGACGACGACGTTTCGA 1025
Query 960 ATGGCGGTTAATTGCCGGCACCGGCTTGAGCCTAAGATGGATCCGTACTACTTCGGAAAC 1019
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1026 ATGGCGGTTAATTGCCGGCACCGGCTTGAGCCGAAGATGGATCCGTACTACTTCGGAAAC 1085
Query 1020 GCGATACAGAGCATACCGACGTTGGCGTCTGCGGGAGATCTGTTAAGCAAAGATCTCCGG 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1086 GCGATACAGAGCATACCGACGTTGGCGTCTGCGGGAGATCTGCTAAGCAAAGATCTCAGG 1145
Query 1080 TGGTCCGCCGAACAATTACACAGAAACGTGGTGGCGCACGACGACGCGACGGTCCGACGG 1139
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1146 TGGTCCGCCGAACAGTTACACAGGAACGTGGTGGCGCACGACGACGCGACGGTCCGCCGT 1205
Query 1140 GGAATCGCCGCTTGGGAAAGCGATCCGAGGCTGTTTCCTCTCGGAAATCCAGACGGAGCT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1206 GGAATCGCCGCTTGGGAAAGCGATCCGAGGCTGTTTCCTCTCGGAAATCCAGATGGAGCT 1265
Query 1200 TCGATCACGATGGGGAGCTCGCCGAGATTTCCAATGTACGAGAATGATTTCGGTTGGGGA 1259
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1266 TCGATCACGATGGGGAGCTCGCCGAGATTCCCAATGTACGACAATGATTTCGGATGGGGA 1325
Query 1260 AAGCCGTTAGCGGTGAGAAGCGGCGGAGCGAACAAATTCGACGGGAAGATCTCGGCGTTT 1319
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1326 AAACCGTTAGCTGTGAGAAGCGGCGGAGCGAATAAATTCGACGGGAAGATCTCGGCGTTT 1385
Query 1320 CCCGGTAGAGAAGGTAACGGAAGTGTAGATCTGGAAGTAGTACTGGCGCCGGAGACTATG 1379
|||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1386 CCCGGTAGAGAAGGAAACGGAAGCGTGGATCTGGAAGTAGTTCTGGCGCCGGAGACTATG 1445
Query 1380 ACTGGGATTGAGAACGATCCTGAGTTTATGCAATACGTATCACAAGTCACTTACGATTGT 1439
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1446 ACTGGGATTGAGAACGATGCTGAGTTTATGCAATACGTATCAGAAGTCACTTACGATTGT 1505
Query 1440 TGAAAACGACATCGTTTCTGATACAGA 1466
|||||||||| | ||||||||||||||
Sbjct 1506 TGAAAACGACGTAGTTTCTGATACAGA 1532
Score = 219 bits (118), Expect = 1e-55
Identities = 187/217 (86%), Gaps = 17/217 (8%)
Strand=Plus/Plus
Query 1466 ATGACATGGCACTTTTGACGGTTGAGATTTATC-a-aaa-aaaTTAGATATTTCGATCTA 1522
||| ||||||||||| ||||||||||||||||| | ||| ||||||||||||||||
Sbjct 1572 ATGGCATGGCACTTTGGACGGTTGAGATTTATCTATAAAGTTTTTAGATATTTCGATCTG 1631
Query 1523 AGAGTTGTGAAGCGAAGGGA-GTCTTATGAGTCAATCTATCTACTGGTCTTTGTTCTTAA 1581
|||||||||||||||| || |||||||||||| | ||||||| | | ||||||
Sbjct 1632 AGAGTTGTGAAGCGAA-CGACGTCTTATGAGTC-A---ATCTACT-G-----G-TCTTAA 1679
Query 1582 TGTGACAGTATTACTATTAATGTACAAAATCCCGTCTTTTTCAATTTTTTCTTTCTAAAT 1641
||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1680 TGTGACAGT-GTATTATTAATGTACAAAATCCCGTCTTTTTCAAGTTTTTCTTTCTAAAT 1738
Query 1642 TAACAACCCTGTATTATCAATTTAGAAACtttttttt 1678
||||||| ||||||||||| ||||||||||||| |||
Sbjct 1739 TAACAACTCTGTATTATCATTTTAGAAACTTTTATTT 1775
> AT5G01215.1 | Symbols: | other RNA | chr5:84307-85917 REVERSE
LENGTH=1516
Length=1516
Score = 1079 bits (584), Expect = 0.0
Identities = 674/718 (94%), Gaps = 4/718 (1%)
Strand=Plus/Minus
Query 2 AAATAAAATGCCTTCTTGTTCAGTAACAGGAATTTCAAAATGCATAGTTTATCCGGAGAA 61
||||||||||||||||||||| ||||| | |||||||||||| || || |||||||||||
Sbjct 1276 AAATAAAATGCCTTCTTGTTCGGTAACTGAAATTTCAAAATGTATCGTCTATCCGGAGAA 1217
Query 62 GAAGTCCACCGTCTCCGATCTCCGTCTCTCCGTCTCCGACCTCCCTATGCTCTCATGTCA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GAAGTCCACCGTCTCCGATCTCCGTCTCTCCGTCTCCGACCTCCCTATGCTCTCATGTCA 1157
Query 122 TTACATTCAAAAAGGCGtcctcctctctc-gccctcctccttccttttccttcgacgacc 180
||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||
Sbjct 1156 TTACATTCAAAAAGGCGTCCTCCTCAC-CAGCCCTCCTCCTTCCTTCTCCTTCGACGACC 1098
Query 181 ttgtctcctctctccgccgttctctttcctccactctctctctTTTCCCTGCTTTAGCCG 240
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 1097 TTGTCTCCTCTCTCCGCCGTTCTCTCTCCTCCACTCTTTCCCTCTTCCCTGCTTTAGCCG 1038
Query 241 GACGTTTCTCCACCAGTCCCGCCGGTCACATTTCCATAGTCTGCAACGACGCGGGCGTTG 300
| ||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1037 GCCGTTTCTCCACCACTCCCGCCGGTCACATTTCCATTGTCTGCAACGACGCCGGAGTTG 978
Query 301 ATTTCGTCGCCGCTTCTGCTAAACACGTCAAAGTCTCCGACGTTCTCTTACCAGATAAAG 360
|||||||||||||||| ||||||||||||||| |||| || ||||||||||||| | |||
Sbjct 977 ATTTCGTCGCCGCTTCCGCTAAACACGTCAAACTCTCTGATGTTCTCTTACCAGGTGAAG 918
Query 361 ACGTTCCGCTTCTCTTCCGTGAGTTTTTCGTCTTCGAACGTCTCGTTAGTTATAACGGTC 420
||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 917 ACGTTCCTCTGCTTTTCCGTGAGTTTTTCGTCTTCGAGCGTCTCGTTAGTTACAACGGTC 858
Query 421 ATCATAAGCCTCTCGCCGCCGTTCAAGTGACGGAGCTCGACGACGGTGTTTTCATCGGAT 480
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 857 ATCATAAGCCTCTCGCCGCCGTTCAAGTGACGGAGCTCCACGACGGTGTCTTCATCGGAT 798
Query 481 GTACCGTGAATCATTCCGTAACTGACGGAACTTCCTTTTGGCACTTCTTCAACACCTTCG 540
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 797 GTACCGTGAATCATTCCGTTACTGACGGAACTTCCTTCTGGCACTTCTTCAACACCTTTG 738
Query 541 CTGACGTCACTAGCGGTGCTTGTAAGATCAAACACCTTCCAGATTTCTCCCGCCACACCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CTGACGTCACTAGCGGTGCTTGTAAGATCAAACACCTTCCAGATTTCTCCCGCCACACCG 678
Query 601 TCTTCGATTCTCCGG-CTGTTCTACGAGTCCCTCCCGGTGGTCCACGTGTCACTTTCGAT 659
||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||
Sbjct 677 TCTTCGATTCTCCGGTC-GTTCTTCCAGTCCCTCCCGGTGGTCCACGTGTCACTTTCGAC 619
Query 660 GCCGATCAGCCTCTCCGGGAGAGAATTTTTCATTTCAGCAGAGAGGCGATTACGAAAC 717
||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 618 GCCGACCAACCTCTACGGGAGAGAATTTTTCATTTCAGCAGAGAGGCGATTACCAAAC 561
Score = 900 bits (487), Expect = 0.0
Identities = 539/565 (95%), Gaps = 0/565 (0%)
Strand=Plus/Minus
Query 814 CAACCGTTTTGGATAGTTTTTTGAATAATAAGAAGACTCATGATCGGACGGCTGAGATTT 873
||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 565 CAAACGTTTTGGATAGTTTTTTGAATAATAAGAAGAGTTATGATCGGACGGCTGAGATTT 506
Query 874 CATCGTTCCAATCACTCAGTGCTCAGCTATGGCGATCCGTCACGCGATCGAGGAATCTCG 933
||||||||||||| ||||| |||||||||||||||||||| || ||| ||||||||||||
Sbjct 505 CATCGTTCCAATCTCTCAGCGCTCAGCTATGGCGATCCGTTACACGAGCGAGGAATCTCG 446
Query 934 ATCCGAGCAAGACGACGACGTTTCGAATGGCGGTTAATTGCCGGCACCGGCTTGAGCCTA 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 445 ATCCGAGCAAGACGACGACGTTTCGAATGGCGGTTAATTGCCGGCACCGGCTTGAGCCGA 386
Query 994 AGATGGATCCGTACTACTTCGGAAACGCGATACAGAGCATACCGACGTTGGCGTCTGCGG 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGATGGATCCGTACTACTTCGGAAACGCGATACAGAGCATACCGACGTTGGCGTCTGCGG 326
Query 1054 GAGATCTGTTAAGCAAAGATCTCCGGTGGTCCGCCGAACAATTACACAGAAACGTGGTGG 1113
|||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 325 GAGATCTGCTAAGCAAAGATCTCAGGTGGTCCGCCGAACAGTTACACAGGAACGTGGTGG 266
Query 1114 CGCACGACGACGCGACGGTCCGACGGGGAATCGCCGCTTGGGAAAGCGATCCGAGGCTGT 1173
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 265 CGCACGACGACGCGACGGTCCGCCGTGGAATCGCCGCTTGGGAAAGCGATCCGAGGCTGT 206
Query 1174 TTCCTCTCGGAAATCCAGACGGAGCTTCGATCACGATGGGGAGCTCGCCGAGATTTCCAA 1233
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 205 TTCCTCTCGGAAATCCAGATGGAGCTTCGATCACGATGGGGAGCTCGCCGAGATTCCCAA 146
Query 1234 TGTACGAGAATGATTTCGGTTGGGGAAAGCCGTTAGCGGTGAGAAGCGGCGGAGCGAACA 1293
||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| |
Sbjct 145 TGTACGACAATGATTTCGGATGGGGAAAACCGTTAGCTGTGAGAAGCGGCGGAGCGAATA 86
Query 1294 AATTCGACGGGAAGATCTCGGCGTTTCCCGGTAGAGAAGGTAACGGAAGTGTAGATCTGG 1353
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 85 AATTCGACGGGAAGATCTCGGCGTTTCCCGGTAGAGAAGGAAACGGAAGCGTGGATCTGG 26
Query 1354 AAGTAGTACTGGCGCCGGAGACTAT 1378
||||||| |||||||||||||||||
Sbjct 25 AAGTAGTTCTGGCGCCGGAGACTAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82981500885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5