BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486963
Length=1994
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01170.1 | Symbols: | Protein of unknown function (DUF740) ... 2723 0.0
> AT5G01170.1 | Symbols: | Protein of unknown function (DUF740)
| chr5:58162-60136 FORWARD LENGTH=1975
Length=1975
Score = 2723 bits (1474), Expect = 0.0
Identities = 1837/2007 (92%), Gaps = 45/2007 (2%)
Strand=Plus/Plus
Query 1 ATCTCCTTTCTCTTTCAATGTCCGTTGGTAACAGACGAAAGTTTCAGACATAACAACTCT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1 ATCTCCTTTCTCTTTCAATGTCCGTTGGTAAAAGACGAAAGTTTCAGACATAACATCTCT 60
Query 61 TCCAATCTCTCT---CT-AAAGCAATTAAGCAGACAAGACAGTGATGATATGAGCCAAAG 116
||| |||||||| || |||||||||||||||||||||| |||||||||||| | |||
Sbjct 61 TCCCATCTCTCTCCCCTCTAAGCAATTAAGCAGACAAGACACTGATGATATGAGACGAAG 120
Query 117 AGAAACG-AGCCGTGGTATCACTCATCGTTTCCTCTTATGAATCTCTCCGCCGACCAAGC 175
||||| | || | | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 AGAAA-GAAGTC-T--TATCACTCATCCTTTCCTCTTATGAATCTCTCCGCCGACCAAGC 176
Query 176 TCCCATCGCCGCCGCCGACGAACTAGCTCCGCCGTCTCAACCGCATCGCTTATCAACATC 235
|||| || |||||| |||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 177 TCCCGTCACCGCCGTCGACGAACTAGCTCCGCCTTCTCAACCGCATCGCTTATCTACATC 236
Query 236 ATGTGATCTCCACCCAGATGAGCGTTTCTCCGGTTTTTGTCCTTCCTGTCTCTGCGATCG 295
|||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 237 ATGTGATCTCCACCCAGAAGAGCGTTTCTCCGGTTTCTGTCCTTCTTGTCTTTGCGACCG 296
Query 296 CCTCTCCGTCTTAGATCACAACGCCGCTCCGCCGCCGTCGTCTTCTTCCCGGAAACCTCT 355
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 297 CCTCTCCGTCTTAGATCACAACGCCGCTCCGCCACCGTCTTCTTCTTCCCGGAAACCTCC 356
Query 356 CACTATCTCCGCTGCTACGTTAAAAGCTCTCTTTAAGCCCCCCACTAGTGGTAACAACAA 415
| |||||||||||| | |||||||||||||||| |||||| || ||||||||| ||||||
Sbjct 357 CTCTATCTCCGCTGTTTCGTTAAAAGCTCTCTTCAAGCCCTCCTCTAGTGGTACCAACAA 416
Query 416 CTCCAATGTAAACGGTCGGGTCAAACCCGGTTTCTTCCCGGAGCTCCGACGTACGAAGTC 475
|||||| | |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 417 CTCCAACGGAAACGGTCGGGTCAGACCCGGTTTCTTCCCGGAGCTCCGACGTACAAAGTC 476
Query 476 GTTTTCTGCAAAGAACAACGAAGGATTATCCGGTGGGTTTGAGCCGCAGCGTCGGTCTTG 535
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 477 CTTTTCCGCAAAGAACAACGAAGGATTTTCCGGTGGGTTTGAGCCACAGCGTCGGTCTTG 536
Query 536 TGACGTCAGGCTTCGTGACGACCATAGAAACCCTCCC-TCCAAAGAAACTGCCACCGTCG 594
||||||||| |||||||||||| | ||||||| |||| | ||| ||| ||||| ||||||
Sbjct 537 TGACGTCAGACTTCGTGACGACGAAAGAAACCTTCCCAT-CAATGAAGCTGCCTCCGTCG 595
Query 595 GTAAAATCGAGGACGAGCCGAGAAAGTCTAGCGTGAGTGAGATAGTTTTAGAGGTGAGTG 654
|||||||||||| ||| | || ||||||||||||||||||||||||||||||||| ||
Sbjct 596 ATAAAATCGAGGAGGAGGCTAGGGAGTCTAGCGTGAGTGAGATAGTTTTAGAGGTGACTG 655
Query 655 AAGAAGCTGAAATTGAGGAGGAAGAAGAAAATGGTGGCCACTCTGAGATCTTAAATGATA 714
|||||||||||||||||||||| |||||||| || |||| ||| |||
Sbjct 656 AAGAAGCTGAAATTGAGGAGGATGAAGAAAA---CGG------TGAG-----AAA-GATC 700
Query 715 CCGGCGAAATCGTTGAAGAAAAAAGCGGCGAAATTGTTGAGGAAGAAGAGGAATTGAAGC 774
||||||| || ||||| ||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 701 CCGGCGAGATAGTTGAGGAAAAAAGCAGCGAAATTGGTGAGGAAGAAGAGGAATTGAAGC 760
Query 775 CAATGAAGGATTACATGGATCTCTACTCACAAACAAAGAAACCGTCGGTGAAAGATTTCG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CAATGAAGGATTACATGGATCTCTACTCACAAACAAAGAAACCGTCGGTGAAAGATTTCG 820
Query 835 CCGGGAGTTTCTTTTCGGCGGCCTCTGTTTTCAGCAAGAAACTTCAGAAATGGAGGCAGA 894
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 821 CCGGGAGTTTCTTTTCGGCGGCCTCTGTTTTCAGCAAGAAGCTTCAGAAATGGAAGCAGA 880
Query 895 AGCAGAAGATCAAGAAGCCGAGAAACGGTGTCGGCGGCGGCGGAGGACGGCCACAGTCCG 954
|||||||| | |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 881 AGCAGAAGGTGAAGAAGCCGAGAAACGGTGTCGGCGG------AGGACGGCCACAGTCTG 934
Query 955 AAATCGGAGTAGGCCGGAGATCCAGCGACACCGACCCGAGATTCTCTCTTGACGCCGGGA 1014
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 935 AAATCGGAGTAGGCCGGAGATCAAGCGACACCGACCCGAGATTCTCTCTTGACGCCGGGA 994
Query 1015 GATTCTCCGTCGATATAGGTCGGATTTCGCTGGACGATTCTCGTTACTCGTTGGACGAGC 1074
|||||||||||||||||||||||||||| ||||||||||||| ||||| || || ||||
Sbjct 995 GATTCTCCGTCGATATAGGTCGGATTTCAATGGACGATTCTCGCTACTCATTAGATGAGC 1054
Query 1075 CAAGAGCGTCGTGGGATGGACACTTAATCAGCAGGACAACGGCGGCTAGGGTTCCTCCGC 1134
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1055 CAAGAGCGTCGTGGGATGGACACTTAATCGGCAGGACAACGGCGGCTAGGGTTCCTCTGC 1114
Query 1135 CGCCATCGATGTTATCAGTCGTGAAAAACGCGCCAATTCA-TCGATCAGACATGCAGATT 1193
||||||||||||||||||| ||| |||| || || || | |||||||||||||||||||
Sbjct 1115 CGCCATCGATGTTATCAGTTGTGGAAAATGCTCCG-TTGAATCGATCAGACATGCAGATT 1173
Query 1194 CCATCGTCTCCGTCAATTAATCCGGTTAACAATGAATCCGATCCGATTATCATTATCCCC 1253
|||||||||||||||||||| ||| ||| | ||| ||||| ||||||||||| |||||
Sbjct 1174 CCATCGTCTCCGTCAATTAAACCGATTAGCGGTGACTCCGACCCGATTATCATAATCCCA 1233
Query 1254 GGCGGATCTAATCAAACTCGAGACTATTACACTGGACCTCCGTCGTCACGGAGACGGAAG 1313
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1234 GGCGGATCCAATCAAACTCGAGACTACTACACTGGACCTCCGTCGTCACGGAGACGGAAG 1293
Query 1314 AGCCTCGACAGATCCAATTCAATTAGGAAAATTGCGACGGAGCTGGACGATGTCAAATCG 1373
|||||||||||||||||||| ||||| ||||||| |||||||| || ||||||||||||
Sbjct 1294 AGCCTCGACAGATCCAATTCTATTAGAAAAATTGTAACGGAGCTAGAGGATGTCAAATCG 1353
Query 1374 GTATCAAATTCGACAACAACAATAGATTCAAATTTCATGGAAACAGCGGAGAACAAAGGG 1433
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1354 GTATCAAATTCGACAACAACAATAGACTCAAATTCCATGGAAACAGCGGAGAACAAAGGG 1413
Query 1434 AATCAAAACGGCGATAAGAAATCGAGACGGTGGGCGAAA-TGGAGCATTTTAGGGTTTAT 1492
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1414 AATCAAAACGGCGATAAGAAATCGAGACGGTGGG-GAAAATGGAGCATTTTAGGGTTTAT 1472
Query 1493 ATACAGGAAAGGTAAGGACGATGAAGAAGAAGAAGATAGGTATAGCAGATCCAACAGCGC 1552
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1473 ATACAGAAAAGGTAAGGACGATGAAGAAGAAGA---TAGGTACAGCAGATCCAACAGCGC 1529
Query 1553 CGGAATGGTTGAGAGGTCTTTATCGGAATCGTGGCCGGAGCTGAGGAACGGAGAAGGAGG 1612
|||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 1530 CGGAATGGTTGAGAGGTCTTTATCGGAATCATGGCCGGAGATGAGGAATGGAGAAGGAGG 1589
Query 1613 AGGGCCGAAGATGAGGAGGAGTAACAGCAATGTGAGCTGGCGAAGCTCCGGTGGAGGATC 1672
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 AGGACCGAAGATGAGGAGGAGTAACAGCAATGTGAGCTGGCGAAGCTCCGGTGGAGGATC 1649
Query 1673 GACGAGGAATAAGAGTTCGAGGTATTCTTCTAAAGATGGAGAGAACGGAATGTTGAGGTT 1732
| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1650 GGCGAGGAATAAGAGTTCGAGGTATTCGTCCAAAGATGGAGAGAACGGAATGTTGAGGTT 1709
Query 1733 TTATTTGACTCCGATGAGGAGTAGCTGGA-GAAgcggcgggggtagtggtggtggcgg-- 1789
||||||||||||||||||||| ||||||| || | |||| ||||||||||| |||||
Sbjct 1710 TTATTTGACTCCGATGAGGAGAAGCTGGAAGAC-CAGCGGTGGTAGTGGTGGAGGCGGAG 1768
Query 1790 -cggaggcggtggtggtgggtgggAGAAGACGGCGGCTAAGGCAAATAGTCACGGCCACT 1848
||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1769 GCGGTGGTGGTGGTGGTGGGTGGGAGAAGACGGCGGCTAAGGCGAATAGTCACGGCCACT 1828
Query 1849 CTATAGCAAGGAGAGTTATGAGGCTGTATTGACGAAATTGTCCCTCTTCATTTTAATTAT 1908
||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1829 CTATAGCGAGGAGGGTTATGAGGCTGTATTGACCAAAGTGTCCCTCTTCATTTTAATTAT 1888
Query 1909 TGGGAGCAATGGGAGGTTTTGGTTTTGGGTTGTCTAATTATCTTTGTGAATAA-TTGGTT 1967
||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||| |
Sbjct 1889 TGGGAGCAATGTGAGGTTTTGGTTTGGGGTTCTCTAATTATCTTTGTGAATAAATTGGAT 1948
Query 1968 ATCTACTTAACCAGAGTTAATCAGACC 1994
|||||||||||| ||||||||| ||||
Sbjct 1949 ATCTACTTAACCGGAGTTAATCGGACC 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98794672560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5