BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486965
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01150.1 | Symbols: | Protein of unknown function (DUF674) ... 2067 0.0
> AT5G01150.1 | Symbols: | Protein of unknown function (DUF674)
| chr5:51988-53817 FORWARD LENGTH=1674
Length=1674
Score = 2067 bits (1119), Expect = 0.0
Identities = 1405/1543 (91%), Gaps = 20/1543 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAAAAGTTCTGAGGAGCCTAAGTTTACTTTGAGACTTATTGTTGATGAGGAGAAA 60
|||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGGCTAAAAGTAGTGAGGAGCCTAAGTTTTCTTTGAGACTTATTGTTGATGAAGAGAAA 60
Query 61 AACAAGGTCGTTTTGGCTGAAGCTTGTAGGGAATTTGTTGATGTACTCTTCAGCCTTCTG 120
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AACAAGGTTGTTTTGGCTGAAGCTTGTAGGGATTTTGTTGATGTACTCTTCAGCCTTCTG 120
Query 121 ACACTTCCAATGGGAACCATTGTCAGATTGCTTGAGAATCATCGCAAATCTGAGCCAGTT 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ACACTTCCAATGGGAACCATTGTCAGATTGCTTGAGAATCATCGAAAATCTGAGCCAGTA 180
Query 181 ACTGTTGGCTGTTTCAACAATCTCTATAGAAGCGTTGTGGAGATGAGCAGAGATAGTTTT 240
||| | |||||||| ||||||||||||||||| |||||||| ||| |||| ||| |||||
Sbjct 181 ACTCTGGGCTGTTTTAACAATCTCTATAGAAGTGTTGTGGACATGGGCAGTGATTGTTTT 240
Query 241 GAGACTGAAGCTTGTAAGCAGATGCTCATGTATCCGAGGAGTGTGAGGGATGTCCAGTGC 300
|||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||
Sbjct 241 GAGACTGAAGCTTGTAAGCAGATGCTTGTGTATCCGAAGAGTGTGAAAGACCTCCAGTGC 300
Query 301 AAAAGGCTTAAGCTCAACATAAACCCTACTGAGGACATCAAGTGCTTTAAGTGCCCAAGT 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 301 AAAAGGCTTAAGCTCAACATAAACCCTACTGAGGACATCAAGTGTTTTAAGTGCTCAAGT 360
Query 361 TACTGCAGCTTATACAGTAATTTTAACACCTCTATATGTAGTTGCGGAAA-TTTGACGAA 419
|||||| |||| ||||||||||| | |||||||| |||| |||||||||| ||| | |||
Sbjct 361 TACTGCGGCTTGTACAGTAATTTCAGCACCTCTAAATGTCGTTGCGGAAAATTT-ATGAA 419
Query 420 CGAGGAGATTAAATTAGAAAACAAAGAAAAAG-TTGCAGGCCAGAATCAA-AGTGATGCT 477
|||||||||| | ||||||||| | ||| ||| || ||||| | |||| | ||||| |
Sbjct 420 CGAGGAGATTCAGTTAGAAAACGAGGAACAAGATTT-AGGCCGGTTTCAAGA-TGATGAT 477
Query 478 AATGGAGTATTTGTCAGCGGTAGGTGTTCATTTATCTTAACTGATGACTTGGAAGTGGCT 537
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 478 AATGGAGTATTTGTCAGCGGTAGGTGTTCATTCGTCTTAACCGATGACTTGGAAGTGTCA 537
Query 538 GTCAAGTCCACTGAACTTGTCTTGAATAAGCTCAAATCATTAGGTTGTGCTGATGTTAGT 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 538 GTCAAGTCCACTGAACTTGTCTTGAATAAGCTCAAATCCTTAGGTTGTGCTGATGTTGGT 597
Query 598 AAGCTCGGTGAAAGGCTTCTTGATATTGGTTTAGAA-GAGGTACTGACTCTGCTGGAATG 656
|||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |||
Sbjct 598 AAGCTCGGTGAAAGGCTTCTTGATATTGGTGT-GAAAGAGGTACTGACTCTGCTGGGATG 656
Query 657 TATATTCTCCTCAAATGCTCCCTTGACGGACGCATTCTTGAACAAGAAAAGTCCGCAAGG 716
|||||||||||||||||||||||| | |||| |||||||||||||| | | | |||||
Sbjct 657 TATATTCTCCTCAAATGCTCCCTTAAAGGACATTTTCTTGAACAAGAAGATTACACAAGG 716
Query 717 TGTGACGAAGTTTTACAAATCGCTAAGTCCATGTTTGGAGAAAAAAGAAGATGAAACAGA 776
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 717 TGCGACGAAGTTTTACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGA 776
Query 777 ACCGGAAAAGGTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATT 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACCTGAAAAGGTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATT 836
Query 837 CATTGAATGCGGAGAGGAATTTGTTGAGCTTCTTTTATCTTTTCTTGCTGTCCCT-TTGG 895
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 837 TGTTGAATGCGGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTG- 895
Query 896 AATCTGTATGGGAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATTGGAAACTTGTGTA 955
|||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 896 AATCTGCATGGGAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATAGGAAACATGTGTA 955
Query 956 GAAGCTTCAGTGACTTAAAGGCTAATGAGGGGACTGAAGTGTCACCTTCCACATGCGTGC 1015
||| |||||| |||||||| | |||| |||| || ||||| |||||||||||| |
Sbjct 956 GAACCTTCAGGGACTTAAA---T---GAGGAGACTCAAATGTCAACTTCCACATGCGCAC 1009
Query 1016 TTCCCTCTTTTTATAATTTCCAGATGCAGTTGCCTGGTATCATCACTCAACAACCTCCAG 1075
|||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |
Sbjct 1010 TTCCGTCTTTCTATAATTTCCAGATGCAACTGCCTGGTATTATCACTCAACAACCTCCGG 1069
Query 1076 TATACTACCGCTACAGGCTCAACGATTACAGGCAAGTGAGCTATGGTTTGACTACAAACG 1135
| |||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1070 TGTACTACCGTTACAGGCTCTACGATTACAGGCAAATGAACTATGGTTTGACTACAAACG 1129
Query 1136 GTAATCGAACTACTTATTTCCGCAAGGACAGAATCGTTCGGGTGGATTTGATGGATCCCA 1195
|||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1130 GTAATCGAACTACTTATTACCGCAAAGACAGAATCGTTCGGGTGGATTTGAAGGATCCCA 1189
Query 1196 AATCCCGTGGCATTAATAAGTCTACTCATGGGTTCTTGAAAAAAGAGACAAAGTTTACTG 1255
|||||||||||| |||||||| |||| ||||||||||| |||| |||||||| |||||
Sbjct 1190 AATCCCGTGGCAGCGATAAGTCTGCTCAGGGGTTCTTGAAGAAAGCGACAAAGTGTACTG 1249
Query 1256 TGTTAGATGATCTGACCATTACATCTATGAACTCCTGCTCCACAGTTTGCTTACTAAAGA 1315
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1250 TATTAGATGATCTGACCATTACATCTATGAACTCCTGCTCCACAGTTTGTTTACTAAAGA 1309
Query 1316 ACTTGCAGAGTCATGCAGACGATTTAGAGGTGCAAGTAGTTAGCATCAGCAATGCAGAGG 1375
| ||||||||||| ||||||||| |||||||||||||| |||| ||||||||||||||||
Sbjct 1310 AGTTGCAGAGTCACGCAGACGATCTAGAGGTGCAAGTAATTAGTATCAGCAATGCAGAGG 1369
Query 1376 CTTTGAATTTGTTGAGAGCTTCATTGGTGACATCCGCTGCTTTGAGCACGGCATTATGGA 1435
||||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 1370 CTTTGGATTTGTTGAGAGCTTCCTTGGTGACATCCTCTGCTTTGAGCACGACATTATGGA 1429
Query 1436 ATTTGATTGCTAAGAAACTGAAGGAGGAGACTGATTTATTGAGCC-CGGTTTCAAAGAAA 1494
||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||
Sbjct 1430 ATTTGATTGCTAAGAAACTGAAGGAGGAGACTGATTTATGG-GACACGGTTTCAAAGAAA 1488
Query 1495 GTCAAGGAAGAGACTTGAAGAAAAATACAGAGCTAGTGAGAAT 1537
|| |||||||||||||||||||| | | | |||||||||||||
Sbjct 1489 GTGAAGGAAGAGACTTGAAGAAATAGA-A-AGCTAGTGAGAAT 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5