BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486966
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01140.1 | Symbols: | Protein of unknown function (DUF674) ... 1293 0.0
AT5G01150.1 | Symbols: | Protein of unknown function (DUF674) ... 141 2e-32
> AT5G01140.1 | Symbols: | Protein of unknown function (DUF674)
| chr5:49891-51437 FORWARD LENGTH=1422
Length=1422
Score = 1293 bits (700), Expect = 0.0
Identities = 865/942 (92%), Gaps = 22/942 (2%)
Strand=Plus/Plus
Query 4 GGAACAATCGTTAGATTGCTTG-AGAAGCATCGAAAGTCTGAGT-CAGTTACTATAGGAT 61
||||||||||| |||||||||| | ||||||||||||||||| | |||||||||| ||||
Sbjct 85 GGAACAATCGTCAGATTGCTTGCA-AAGCATCGAAAGTCTGA-TCCAGTTACTATTGGAT 142
Query 62 GTCTTAGCAACCTTTATACAAGTGTTGTGGACAT-GAAGATTGATCATTTTGAGACTGAA 120
||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 143 GTCTTAGAAACCTTTATACAAGTGTTGTGGACATGGAA-CTTGATGATTTTGAGACTGAT 201
Query 121 GCTTGTAAGCAGATGTTGCTTTATCCCAAGAACATTAGGGAAGCTCAATACAGAAACTTT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 202 GCTTGTAAGCAGATGTTGCTTTATCCCAAGAACATTAGGGAGGCTCAATACAGAAACTTT 261
Query 181 AAGCTCAACATTGACCCTAATGAAAGCTTCAAGTGCTTTGGGCGTCGATGTTTCTTC-TT 239
||||||||||||||| ||||||||||||| ||||| ||||| | |||| |||| || |
Sbjct 262 AAGCTCAACATTGACACTAATGAAAGCTTAAAGTGTTTTGGTTGCCGATTTTTC-TCAAT 320
Query 240 CTGTAGAATGTGTAGTAATTTTAACACGTCCCTATGTAAGTGTGGAAAGATGATGAATGA 299
||| |||||||| |||||||| ||||||||||||||||| || |||||| ||||||||||
Sbjct 321 CTGCAGAATGTGCAGTAATTTCAACACGTCCCTATGTAAATGCGGAAAGCTGATGAATGA 380
Query 300 GGAGATAAGTTTTTTAGAATATGAGGAAAATGATGTCGAAGGAGTGTTTATGAGAGACAA 359
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 381 GGAGATAAGTTTCTTAGAATATGAGGAAAATGATGTCGAAGGAGTATTTATGAGAGACAA 440
Query 360 GTCGTCGTTTATCATAACCGATGACTTGAGAGTCACGGATGACTCTACTGGTTCTCTCTT 419
|||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 441 GTCGTCATTTATCATAACCGATGACTTGAGACTCACGGATGATTCTACTAGTTCTCTCTT 500
Query 420 GCAAACACTCAAAGATCTTGGTTGTGCTGATGTTAGTAAGCTGAGAGAGCAGGTTCTTGA 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 501 GCAAACACTCAAAGATCTTGGTTGTGCTGATGTTAGTAAGCTAAGAGAGCAGGTTCTTGA 560
Query 480 TATCGGTTTCAAAGAGGTTATGACTTTGCTGCAATGTGTATTCACCTCAAATACACCTTT 539
||||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 561 TATCGGTCTCAAGGAGGTTATGACTTTGATGCAATGTGTTTTCACCTCAAATACACCTTT 620
Query 540 GACGGATACTTTCTTGAAGAATCAAAGTTCAAACACGGTGAGGAAGAGTTATAGAAAGCT 599
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 621 GACGGATGCTTTCTTGAAGAATCAAAGTTCAAACACGGTGAGGAAGATTTATAGAAAGCT 680
Query 600 G-G--A-G-----G-A--TGAAGCAGAACAAGACAAAGTTATAACTTTTGATGCTATCGT 647
| | | | | | ||||||||||| |||||||||||||||| |||||||||| ||
Sbjct 681 GAGTGATGATAAAGGAGATGAAGCAGAACCAGACAAAGTTATAACTATTGATGCTATAGT 740
Query 648 AAGGAAACAAGACATGAAGATTTTGTACGTTGAGTGCGGTGAAGACTTTGTTGATCTTCT 707
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGGAAACAGGACATGAAGATTTTGTACGTTGAGTGCGGTGAAGACTTTGTTGATCTTCT 800
Query 708 TTTCACTTTTCTCGCCATTCCGTTGGAGTCTACATGGGAAATCTCTGGCAACAATATCAC 767
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||
Sbjct 801 TTTCACTTTTCTCGCCATTCCGTTGGAGTCTATATGGGAAATCTCTGGTAACAGTATTAC 860
Query 768 ATTAGGTCGTATTGGGAACTTGTGCAGAAGCTTCAAAGACTTGAGTGCTAATGAAGTGTT 827
| ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 861 AATAGGTCGCATTGGGAACTTGTTCAGAAGCTTCAAAGACTTGAGTGATAATGAAGTGTT 920
Query 828 GTCAACATCTAAATGTATGATTCCGTATTATTATAGGTGCAAGAAACAGTTGCTCAATAT 887
||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 921 ATCAGCATCCAAATGTATGATTCCGTATTATTATAGGTGCCAGAAACAGTTGCTCAAAAT 980
Query 888 CAGAAATCCTACACCACGGGTTTACTTAA-ACAGCAGTTATT 928
|||| |||||||||||||||||||||| ||| | ||||||
Sbjct 981 AAGAACTCCTACACCACGGGTTTACTTAGGACA-CTGTTATT 1021
Score = 429 bits (232), Expect = 3e-119
Identities = 261/275 (95%), Gaps = 2/275 (1%)
Strand=Plus/Plus
Query 995 GGGACAAAGttttttttGTGTCAGATGATCTTATTGTAACACCTAAGATTTCTAGCTCAA 1054
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GGGACAAAG--TTTATTGTGTCAGATGATCTTATTGTAACACCTAAGATTTCTAGCTCAA 1207
Query 1055 CATTTTCTATGTTGAAGAAGTTTCAGATTCTCACTGATGATTTGGAGGTGCAAGCAATTA 1114
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1208 CATTTTCCGTGTTGAAGAAGTTTCAGATTCTCACAGATGATTTGGAGGTGCAAGCAATTA 1267
Query 1115 CCATCAGCAATGCAGAGGCTTTGAATCTGTTGAGTGCTTCATTGGTGACATCCTCTGCTT 1174
|||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1268 CCATCAGCAATGCAGATGCTTTGAATCTGTTGGGAGCTTCATTGGTGACATCCTCTGCTT 1327
Query 1175 TGAGCTCTGCTTTTGGGAATTTGATTGTAAAGAAACCGAAGGAAGAGACTGTTTCGTGGA 1234
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct 1328 TGAGCTCTGCTTTTGGGAATTTGATTGTGAAGAAACCGAAGGAAGAGAATGTTTCATGGA 1387
Query 1235 ACCCTGTTTCAAAGAAACCAAAGGTAGAGACTTGA 1269
|||| |||||||||||||||||||| |||||||||
Sbjct 1388 ACCCGGTTTCAAAGAAACCAAAGGTTGAGACTTGA 1422
Score = 99.0 bits (53), Expect = 1e-19
Identities = 59/62 (95%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 930 TTTGACTACAAAACATACTACAAGGCGCATGACTTTTGTGGATCCAAAATCTGATTATTG 989
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1053 TTTGACTACAAAACGTACTACAAAGCGCATGACTTTTGTGGATCCAAAATCTGATTGTTG 1112
Query 990 TG 991
||
Sbjct 1113 TG 1114
> AT5G01150.1 | Symbols: | Protein of unknown function (DUF674)
| chr5:51988-53817 FORWARD LENGTH=1674
Length=1674
Score = 141 bits (76), Expect = 2e-32
Identities = 128/153 (84%), Gaps = 4/153 (3%)
Strand=Plus/Plus
Query 1 ATGGGAACAATCGTTAGATTGCTTGAGAAGCATCGAAAGTCTGAGTCAGTTACTATAGGA 60
|||||||| || || |||||||||||||| |||||||| |||||| |||| ||| | ||
Sbjct 130 ATGGGAACCATTGTCAGATTGCTTGAGAATCATCGAAAATCTGAGCCAGTAACTCTGGGC 189
Query 61 TGTCTTAGCAACCTTTATACAAGTGTTGTGGACATGAAG-ATTGATCATTTTGAGACTGA 119
||| ||| ||| || |||| |||||||||||||||| | | |||| ||||||||||||
Sbjct 190 TGTTTTAACAATCTCTATAGAAGTGTTGTGGACATG-GGCAGTGATTGTTTTGAGACTGA 248
Query 120 AGCTTGTAAGCAGATG-TTGCTTTATCCCAAGA 151
|||||||||||||||| ||| | ||||| ||||
Sbjct 249 AGCTTGTAAGCAGATGCTTG-TGTATCCGAAGA 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5