BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486968
Length=2443
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3217 0.0
> AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:41768-44375 REVERSE LENGTH=2608
Length=2608
Score = 3217 bits (1742), Expect = 0.0
Identities = 1969/2082 (95%), Gaps = 2/2082 (0%)
Strand=Plus/Plus
Query 93 tcttcttcttcttcagcttcggattcagattcagattctttcttGGTGGAGAAAATCTGT 152
|||||||||||||| |||||| ||| | |||||||||||||||||||||||| || |||
Sbjct 190 TCTTCTTCTTCTTCGGCTTCGTTTTCTGTTTCAGATTCTTTCTTGGTGGAGAAGATTTGT 249
Query 153 TTCAGTTTGAAGCAGGGTAATAGTAATGTGAGAAACCACCTGATTCGGTTGAACCCTTTA 212
|| ||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 250 TTTAGTTTGAAGCAAGGTAACAATAATGTGAGAAACCACCTGATTCGGTTAAACCCTTTA 309
Query 213 GCCGTCGTTGAGGTTTTGTACCGTTGCCGTAATGATTTAAGTTTAGGTCAAAGATTCGTG 272
||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 310 GCCGTCGTTGAGGTTTTATACCGCTGCCGCAATGATTTAACTTTAGGTCAAAGATTCGTG 369
Query 273 GATCAATTAGGGTTCAATTTTCCGAATTTCAAACATACGTCTTTGTCTTTAAGCGCGATG 332
||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 370 GATCAATTAGGTTTCCATTTTCCGAATTTCAAGCATACGTCTTTGTCTTTAAGCGCTATG 429
Query 333 ATTCATATTTTGGTGAGGAGTGGAAGATTGTCTGATGCACAGAGTTGTGTTCTTAGGATG 392
||||||||| | ||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 430 ATTCATATTCTCGTGAGGAGTGGAAGATTATCAGATGCACAGAGTTGTCTTCTTAGGATG 489
Query 393 ATTAGGAGGAGTGGTGTTTCTAGAGTAGAGATTGTGAATTCCTTGGTTTCGACATATAGT 452
|||||||||||||||||||||||| ||||||||||||||||||||| ||| || | ||||
Sbjct 490 ATTAGGAGGAGTGGTGTTTCTAGACTAGAGATTGTGAATTCCTTGGATTCTACGTTTAGT 549
Query 453 AATTGTGGTTCGAATGATTCGGTTTTCGATTTGTTGATTAGGACTTTTGTACAAGCTAGA 512
||||||||||| |||||||||||||| ||||||||||||||||||| ||| || |||||
Sbjct 550 AATTGTGGTTCCAATGATTCGGTTTTTGATTTGTTGATTAGGACTTATGTTCAGGCTAGG 609
Query 513 AAACTTAGAGAAGCATATGAGGCTTTTACATTGCTGAGAAGCAAAGGTTACACGGTTTCT 572
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 610 AAACTTAGAGAAGCACATGAGGCTTTTACATTGCTGAGAAGCAAAGGTTTTACGGTTTCT 669
Query 573 ATCGATGCGTGTAATGCTCTCATCGGGAGCTTGGTGAGGATTGGGTGGGTAGAGTTGGCT 632
|||||||||||||| ||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 670 ATCGATGCGTGTAACGCTCTTATCGGGAGCTTGGTGAGGATCGGGTGGGTTGAACTGGCT 729
Query 633 TGGCGTATTTATCAAGAGATTTCTCGGAGTGGCGTTGGTGTTAATGTTTACACTCTCAAT 692
||| || ||||||| ||||||||||||||||| |||||| ||||||| || |||||||||
Sbjct 730 TGGGGTGTTTATCAGGAGATTTCTCGGAGTGGTGTTGGTATTAATGTCTATACTCTCAAT 789
Query 693 ATCATGGTTAATGCATTGTGCAAAGATGGTAAAATGGAACAAGTCGGAACCTTTTTGTCA 752
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 790 ATCATGGTTAATGCTTTGTGCAAAGATGGTAAAATGGAAAAAGTCGGAACCTTTTTATCA 849
Query 753 GAAGTGCAAGAGAAAGGGGTTTATCCGGATATTGTAACATATAATACATTGATTAGTGCA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CAAGTGCAAGAGAAAGGGGTTTATCCGGATATTGTAACATATAATACATTGATTAGTGCC 909
Query 813 TACTCTAGTCAAGGTCTCATGGAAGAGGCATTTGAGTTGATGCATGCTATGCCGAGCAAA 872
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 910 TACTCTAGTAAAGGTCTCATGGAAGAGGCATTTGAGTTGATGAATGCTATGCCGGGCAAA 969
Query 873 GGGTTTAGTCCTGGTGTTTATACTTATAATACTGTGATAAATGGACTGTGTAAGCATGGG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GGGTTTAGTCCTGGTGTTTATACTTATAATACTGTGATAAATGGACTGTGTAAGCATGGG 1029
Query 933 AAATATGAGAGAGCCAAGGAAGTTTTCGCGGAGATGTTGAGATCCGGGTTGAGTCCTGAC 992
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1030 AAATATGAGAGAGCCAAGGAAGTTTTCGCGGAGATGTTAAGATCCGGGTTGAGTCCTGAC 1089
Query 993 TCCACTACCTACAGGTCATTGCTGATGGAGGCTTGTAAGAAGGGAGATGCGGTCGAAACG 1052
|||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1090 TCCACTACCTACAGATCGTTGCTGATGGAGGCTTGTAAGAAGGGAGATGTGGTTGAAACG 1149
Query 1053 GAAAATATTTTCAGTGATATGAGATCTAGGGATGTTGTTCCGGATTTGGTTTGCTTTAGC 1112
||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1150 GAAAAGGTTTTCAGTGATATGAGATCTAGAGATGTTGTTCCTGATTTGGTTTGCTTTAGC 1209
Query 1113 TCAATGATGAGTCTTTTTACTCGGAGTGGAAATCTCGATAAGGCATTAATGTATTTTAAC 1172
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TCGATGATGAGTCTTTTTACTCGGAGTGGAAATCTCGATAAGGCATTAATGTATTTTAAC 1269
Query 1173 AGTGTGAAGGAGGCTGGTCTGATTCCTGACAATGTGATCTACACCATTCTTATCCAAGGG 1232
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1270 AGTGTGAAGGAGGCTGGTCTGATTCCTGACAATGTGATCTATACCATTCTTATCCAAGGG 1329
Query 1233 TACTGTAGAAAAGGTATGATCTCTGAAGCTATGAATTTGAGAAATGAAATGCTTCAGCAG 1292
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1330 TATTGTAGAAAAGGTATGATCTCTGTAGCTATGAATTTGAGAAATGAAATGCTTCAGCAG 1389
Query 1293 GGTTGTGCTATGGATGTTGTTACCTACAACACCATTTTGCACGGGTTATGCAAACGGAAA 1352
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1390 GGTTGTGCTATGGATGTTGTTACCTACAACACCATTTTGCATGGCTTATGCAAACGGAAA 1449
Query 1353 ATGTTGGGTGAAGCGGATAAATTGTTCAACGAAATGACCGAAAGGGGTTTATTTCCCGAT 1412
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||
Sbjct 1450 ATGTTGGGTGAAGCGGATAAATTGTTCAACGAAATGACTGAAAGGGCTTTGTTTCCAGAT 1509
Query 1413 TCTTATACTTTAACTATACTGATTGATGGACATTGTAAGCTCGGAAATCTGCAGAACGCA 1472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1510 TCTTATACTTTAACTATACTGATTGATGGACATTGTAAGCTCGGGAATCTGCAGAACGCA 1569
Query 1473 ATGGAGCTCTTTAAAAAGATGAAGGAAAAGAGAATCAAACTCGATGTTGTGACATACAAC 1532
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1570 ATGGAGCTCTTTCAAAAGATGAAGGAAAAGAGAATCAGACTCGATGTTGTGACATACAAC 1629
Query 1533 ACTCTGTTAGATGGGTTTGGTAAAGTAGGCGATATCGATACAGCAAAAGAGATATGGGCA 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 ACTCTGTTAGATGGGTTTGGTAAAGTAGGCGATATCGATACAGCAAAAGAGATATGGGCA 1689
Query 1593 GATATGGTATCAAAAGAGATACTTCCCACTCCAATATCGTT-CAGCATTTTGGTTAACGC 1651
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1690 GATATGGTATCAAAAGAGATACTTCCCACTCCAATATC-TTACAGCATTTTGGTTAACGC 1748
Query 1652 GTTGTGCAGTAAAGGCCATCTTTCTGAAGCATTTCGAGTTTGGGATGAAATGATCAGTAA 1711
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1749 GTTGTGCAGTAAAGGCCATCTGGCTGAGGCATTTCGAGTTTGGGATGAAATGATCAGTAA 1808
Query 1712 AAGTATAAAGCCAACGGTCATGATTTGTAACTCTATGATAAAGGGATATTGCCGCTCTGG 1771
|| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1809 AAATATAAAGCCAACGGTAATGATTTGTAACTCTATGATAAAGGGATATTGTCGTTCTGG 1868
Query 1772 TAATGCCTCAGATGGAGAAAGCTTTTTGGAGAAGATGATCTCAGAAGGTTTTGTACCGGA 1831
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1869 TAATGCCTCAGATGGAGAAAGCTTTTTAGAGAAGATGATCTCGGAAGGTTTTGTGCCGGA 1928
Query 1832 TTGCATCAGTTACAACACATTGATATACGGTTTTGTTAAAGAAGAAAATATGAGCAAAGC 1891
||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||
Sbjct 1929 TTGCATCAGTTACAACACATTAATATATGGTTTTGTTAGAGAAGAAAACATGAGCAAAGC 1988
Query 1892 TTTTGGTTTGGTGAAGAAGATGGAGGAGAAGCAAGGAAGATTAGTACCTGATGTCTTTAC 1951
|||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||
Sbjct 1989 TTTTGGTTTGGTAAAGAAGATGGAGGAGGAGCAAGGAGGATTAGTACCTGATGTATTTAC 2048
Query 1952 GTACAATTCGATCTTACATGGGTTTTGTAGACAAAATCAGATGAAAGAAGCTGAGGCTGT 2011
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 2049 ATATAATTCGATCTTACATGGGTTTTGTAGACAAAATCAGATGAAAGAAGCCGAGGTTGT 2108
Query 2012 GCTAAGGAAGATGATCGAGAGAGGTGTCAATCCTGATAGGCCAACGTATACTTCTCTGAT 2071
||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||
Sbjct 2109 GCTAAGGAAGATGATCGAGAGAGGTGTCAATCCCGATAGGTCAACGTATACTTGTATGAT 2168
Query 2072 CAATGGATTTGTTTCTCAAGATAACTTAACCGATGCATTTCGGTTTCACGATGAGATGCT 2131
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2169 CAATGGATTTGTTTCTCAAGATAACTTAACCGAGGCATTTCGGATTCACGATGAGATGCT 2228
Query 2132 GCAGAGAGGATTCTCTCCTGATGATAAATTCTGAATCAGTAT 2173
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2229 GCAAAGAGGATTCTCTCCTGATGATAAATTCTGAATCAGTAT 2270
Score = 241 bits (130), Expect = 3e-62
Identities = 215/252 (85%), Gaps = 21/252 (8%)
Strand=Plus/Plus
Query 2171 TATCCTAGATAGAGTTGATATTGATGTTTTTTGGTCAAAGGACCAAAGATGTGTG----- 2225
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2317 TATCCTAGATTGAGTTGATATTGGTGTTTTTTGGTCAAAGGACCAAAGATGTGTGTCACT 2376
Query 2226 --TCACTGCAGAAGCTCAAGGAACTTGACTTTCTTGAATAGCAAAATGGTCCCCGTACTT 2283
||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2377 ACTCACTACAGAAGCTCAAGGAACTTGACTTTATCGAATAGCAAAATGGTCCCCGTACTT 2436
Query 2284 TATAACATT-CATATTAGACCTCAGTTTCTTGTAATATACCATTTAGTCAGTCCAAAATT 2342
| |||||| |||||||||||||||||||||||||| |||||||||||| || || |||
Sbjct 2437 GAGAACATTTCATATTAGACCTCAGTTTCTTGTAATCTACCATTTAGTCCTTC-AACATT 2495
Query 2343 TATAGTTTTATACGCATAC-ttttcttttcttttttGAAATTACCAAATATTGTTTTATT 2401
|||| ||||||| |||| || ||| | ||||||||||||| ||||| ||||
Sbjct 2496 TATA--------CGCATACGTTTTAATT-CTTCT--GAAATTACCAAATTTTGTTGTATT 2544
Query 2402 TAGTCAAATTAT 2413
||||||||||||
Sbjct 2545 TAGTCAAATTAT 2556
Score = 58.4 bits (31), Expect = 3e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 2413 TCATAAGTAAAATATATGAAAGTTGAAACAG 2443
|||||||||||||||||||||||||||||||
Sbjct 2569 TCATAAGTAAAATATATGAAAGTTGAAACAG 2599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121334717265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5