BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486969
Length=2281
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01100.1 | Symbols: | O-fucosyltransferase family protein |... 3312 0.0
> AT5G01100.1 | Symbols: | O-fucosyltransferase family protein
| chr5:34596-37948 REVERSE LENGTH=2364
Length=2364
Score = 3312 bits (1793), Expect = 0.0
Identities = 2058/2185 (94%), Gaps = 21/2185 (1%)
Strand=Plus/Plus
Query 71 AAGTTTCAACAATGGAGAATCTTCATTGATTCCTAAATATCTCTCTCCGATCATATTTTT 130
|||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 96 AAGTTTCAACAATGGAGATTCTTCGTTGATTCCTAAATATCTC-CTCTGATCATATTTTT 154
Query 131 TGTTTCCTAAAA-TATCCCCTGTTTTTCCCGGCGGCCACATGTCAGTCGGCGTTCCGGTG 189
| || | |||| |||| ||||||| |||||||| |||||||||||||||||||| |||
Sbjct 155 TCATT-CAAAAAGAATCCTCTGTTTTCCCCGGCGGTCACATGTCAGTCGGCGTTCCAGTG 213
Query 190 AATCCGTCGAGCAGCAGCCAATTACCGGCGGCGCCAACAACAACAACAAGACGGCGCATG 249
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 214 AATCCGTCAAGCAGCAGCCAACTACCGGCGGCGCCAACAACAACAACAAGACGGCGCGTG 273
Query 250 GCTGATTCTCAAGAAGATCATTCCCACGTCAACACCGTCGGAGGAGGAAACGCAGTCGTT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 GCTGATTCTCAAGAAGATCATTCCCACGTCAACACCGTCGGAGGAGGAAACGCAGTCGTT 333
Query 310 TACGTCCCCGACGAGGAAGAAACCGCCACGAGCTGCGGCGGCGGAGGAGGAGTAGGAGGA 369
|||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 334 TACGTCCCCGACGAGGAAGAAACCGCTACGAGCTGCTGCGGCGGAGGAGGAGGAGGAGGA 393
Query 370 --A-CATCGTGTTGTCCTAGTGGCTCCCACCACAATTACCTCGTCGGGTTCCTCTCTCTC 426
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TCATTATCGTGTTGTCCAAGTGGCTCCCACCACAATTACCTCGTCGGGTTCCTCTCTCTC 453
Query 427 CGCAAATTCAGGCTCGTGTGGATGCTAATGGTTGAGAACAAATCTAAATGGACGGCTGGG 486
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 CGAAAATTCAGGCTCGTGTGGATGCTAATGGTTGAGAACAAATCTAAATGGACGGCTGGG 513
Query 487 ATTGCTCGTAACATGAGATCCTCGACCAATCTTGGCCGTTTGATTCTAAAGTTATTGACC 546
||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||
Sbjct 514 ATTGCTCGTAACATGAGATCCACGACCAATCTTGGCCGTTTTATTCTAACGTTATTGAGT 573
Query 547 ATACTCGTCGTAACTTTTTTCCTCATCGTTGCTCTCTCCGGCGGCGTTGGACGACGGCGA 606
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 574 ATCCTCGTCGTCACTTTTTTCCTCATCGTTGCTCTCTCCGGCGGCGTTGGAAGACGGAGA 633
Query 607 AGACACGTGGAGAAACATGAATTCGTTGTTTCAATTCATCCTAGACCAACGATTGAGAAA 666
| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 634 AAACACGTTGAGAAACATGAATTCGTTGTTTCAATTCATCCCAGACCAACGATTGAGAAA 693
Query 667 ATCATTAGAGAAGATGAATCATCCAATTCCTTTCAAGTCCTCGTACCAAAGACTAAATCG 726
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 694 ATCATTAGAGAAGATGAATCATCCAATTCCTTTCAAGTCCTCGTTCCAAAAACTACATCG 753
Query 727 ATCCCAGAGATTTGGAATCAACCAAAGACTGGGAACTATCAGAAATGTGTAGCTCGTCCT 786
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 754 ATCCCAGAGATTTGGAATCAACCGGAGGTTGGGAACTATCAGAAATGTGTAGCTCGTCCT 813
Query 787 AAGAACCAAAGACCAATCAAGCAAACCAATGGTTACCTTCTTGTTCACGCCAATGGTGGT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 AAGAACCAAAGACCAATCAAGCAAACCAATGGTTACCTTCTTGTTCACGCCAATGGTGGT 873
Query 847 TTGAATCAGATGAGAACTGGTATATGTGATATGGTCGCAATCGCTAAAATCATGAACGCG 906
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 874 TTGAATCAGATGAGAACTGGTATATGTGATATGGTGGCAATCGCTAAAATCATGAACGCA 933
Query 907 ACTCTTGTTCTTCCGTTTCTTGACCATTCATCTTTCTGGAGTGATCCAAGCTCGTTCAAG 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 ACTCTTGTTCTTCCGTTTCTTGACCATTCATCTTTCTGGAGTGATCCAAGCTCGTTCAAG 993
Query 967 GACATTTTCGACTGGAGACATTTCATCAAAGTTCTAGCAGAAGATGTCAATATTGTCGAG 1026
|||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 994 GACATTTTCGACTGGAAACATTTCATAAAAGTACTAGCAGAAGATGTCAATATTGTCGAG 1053
Query 1027 TACTTACCGCAAGAATATGCTTCTATTAAGCCTCTTGAAAAGAATCCTGTGTCCTGGTCT 1086
|| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1054 TATTTACCGCAAGAATTTGCTTCGATTAAGCCTCTTGAAAAGAATCCTGTGTCCTGGTCT 1113
Query 1087 AAGTCGAGTTACTACAGAAACTCAATCTCCAAGTTACTGAAGAAGCATAAGGTGATTGTA 1146
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1114 AAGTCGAGTTATTACAGAAACTCAATCTCCAAGTTACTTAAGAAGCATAAGGTGATTGTA 1173
Query 1147 TTCAATCACACTGATTCTCGGCTAGCGAACAACAGTCCGCCTCCTTCGATCCAGAGGCT- 1205
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 1174 TTCAATCACACTGATTCTCGGCTAGCCAACAACAGTCCGCCTCCTTCCATCCAGCGGCTT 1233
Query 1206 CAGATGTCGCGCGAACTATGAAGCTCTTCGCTACTCTGAAGATATAGAGAATCTAAGCAA 1265
| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1234 C-GATGTCGCGCAAACTATGAAGCTCTTCGTTACTCTGAAGATATAGAGAATCTGAGCAA 1292
Query 1266 TGTTCTAGCTTCAAGACTTAGAGAAAACAACGAACCCTACCTCGCTCTTCACTTGCGGTA 1325
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TGTTCTCTCTTCAAGACTTAGGGAAAACAACGAACCCTACCTCGCTCTTCACTTGCGGTA 1352
Query 1326 CGAGAAAGATATGTTGGCGTTTACCGGATGCAATCACAGTCTATCCAATGAAGAATCGAA 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1353 CGAGAAAGATATGTTGGCGTTTACCGGATGCAATCACAGTCTATCCAATGAAGAATCCAT 1412
Query 1386 TGATCTTGAGAAGATGAGGTATAGTATTCCACATTGGAAAGAAAAAGTGATCAATGGTAC 1445
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1413 TGATCTTGAGAAGATGAGGTTTAGTATTCCACACTGGAAAGAAAAAGTGATCAATGGTAC 1472
Query 1446 AGAACGGCGTCTTGAAGGTAATTGCCCTATGACTCCGCGTGAAGCTGCCGTCTTCCTCAA 1505
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1473 AGAACGGCGTCTTGAAGGTAATTGCCCTATGACGCCGCGTGAAGCTGCCGTCTTCCTCAA 1532
Query 1506 GGCGATGGGGTTTCCTTCGACCACGAATATCTACATTGTTGCAGGAGAGATCTACGGTCA 1565
|||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||
Sbjct 1533 GGCGATGGGGTTTCCTTCGACCACCAATATCTACATTGTTGCAGGAAAAATCTACGGGCA 1592
Query 1566 GAACAGTATGACTGCGTTCCACGAAGAGTTCCCAAGCGTTTTCTTTCACT-CTAAATTGG 1624
|||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||
Sbjct 1593 AAACAGTATGACTGCGTTCCACGAAGAGTTCCCAAACGTTTTCTTTCACAAC-ACATTGG 1651
Query 1625 CCACCGAGGAAGAGCTTTCGACTATTAAACCTTACCAGAACAGATTAGCTGCTCTTGATT 1684
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1652 CCACAGAGGAAGAGCTTTCGACTATTAAACCTTATCAGAACAGATTAGCTGCTCTTGATT 1711
Query 1685 ACAATTTAGCACTCGAAAGTGATGTTTTCGCTTATACTTATGATGGAAACATGGCGAAAG 1744
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1712 ACAATTTAGCACTCGAAAGCGATATTTTCGCTTATACTTATGATGGAAACATGGCGAAAG 1771
Query 1745 CGGTTCAAGGTCATCGGAGATTTGAAGGGTTTAGAAAAACGATTAACCCCGATAGGCAAA 1804
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1772 CGGTTCAAGGTCACCGGAGATTCGAAGGGTTTAGAAAAACGATTAATCCCGATAGGCAAA 1831
Query 1805 GATTCGTGAGATTGATTGATCGCCTCGATGCAGGACTCATATCTTGGGATGATTTCTCGT 1864
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1832 GATTCGTGAGATTGATTGATCGGCTCGATGCAGGACTCATATCTTGGGAAGATTTCTCGT 1891
Query 1865 CGAAGGTTAAGAA-ACTACATCAGAATAGAGTAGGAGCACCGTATCTTAGGCGGCCAGGA 1923
| ||||||||||| | | |||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 1892 CAAAGGTTAAGAAGA-TGCATCAGCATAGAATAGGAGCACCGTATCTTAGGCAGCCAGGA 1950
Query 1924 AAGGCAGGCTTGAGTCCAAAGTTGGAGGAGAATTTTTATGCTAACCCTCTTCCAGGTTGC 1983
||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1951 AAGGCAGGCATGAGTCCAAAGTTAGAGGAGAATTTTTATGCTAACCCTCTTCCTGGTTGC 2010
Query 1984 TTGTGCGATACGTCTGAGGAACAATCAAGCCTTAACCGGTTTGAAAGACCAAGTCTACGA 2043
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2011 GTGTGCGATACGTCTGAGGAACAAACCGGCCTTAACCGGTTTGAAAGACCAAGTCTACGA 2070
Query 2044 GCACAATCTCTGAGATAGAGGGTTCAATTCAACGAtttttttCATTAATTATACGCACAT 2103
||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||
Sbjct 2071 GCACAATCTCTGAGATAAAGGGCTCAATTCAACGATTTATT-CATTAATTATACGCACAT 2129
Query 2104 ACACAACatttttggttttttcttttctgttcatttgtagattagtgtttttttatttat 2163
||||| |||||||||||||| |||||||||||||||||||||||| |||| || || |
Sbjct 2130 ACACATCATTTTTGGTTTTT-CTTTTCTGTTCATTTGTAGATTAGGGTTTCGTT-TT-A- 2185
Query 2164 tttaAGTATTCTAATTATAGTAGGAAATTAGAGAATTATAAGCAAGATTTGTGAACTCAA 2223
| |||||||||||||||||||||||||||||| || ||||||||||| | ||||||
Sbjct 2186 ---A-GTATTCTAATTATAGTAGGAAATTAGAGAAATACAAGCAAGATTTTTCAACTCAG 2241
Query 2224 CAATCAAATACCAATCATTGCTTAT 2248
| |||||||||||| ||||||||||
Sbjct 2242 CTATCAAATACCAACCATTGCTTAT 2266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113202228975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5