BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486972

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01070.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily...   276    1e-73


> AT5G01070.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily 
protein | chr5:25094-25799 REVERSE LENGTH=621
Length=621

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 167/176 (95%), Gaps = 0/176 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTTCTTACGAAATCTCTCACATTGATTTGGAAAATGGTTCCGGCGAGCGTCATTAC  60
            ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  1    ATGTCATCTTACGAAATCTCTCACATTGATTTAGAAAATGGTTCCGGCGAGCGTCAATAC  60

Query  61   CGTCGAAGTGACGTCAGCGGAGAAGACAGTTCATCTTGTGATTACGACTACGATTTTCAC  120
            |||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  61   CGTCCAAGTGACGTCAGCGGAGAAGATAGTTCTTCTTGTGATTACGACTACGATTTTCAC  120

Query  121  TCAGCTGTTCGTAGCTTTTGCGGTGAGTTTGAGATGGCTGATGACTTGGACGACGA  176
            ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct  121  TCAGCTGTTCGTAGCTTTTGCGGCGAGTTTGAGATTGCTGATGATTTGGACGACGA  176


 Score =  268 bits (145),  Expect = 2e-71
 Identities = 153/157 (97%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  177  GTCTCCAGAGAAAGATTGCCGGATTTGCCATTTGGGCTTAGAGAGTAGTCGCCATGAATG  236
            |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  216  GTCTCCGGAGAAAGATTGCCGGATTTGCCATTTGGGTTTAGAGAGTAGTCGTCATGAATG  275

Query  237  TGGAGATCCAATGGTTCTTGGATGTTCTTGTAAAGATGATTTGGGTTACGTTCATAAGCA  296
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  276  TGGAGATCCAATGGTTCTTGGATGTTCTTGTAAAGATGATTTGGGTTATGTTCATAAGCA  335

Query  297  ATGTGCCGATACTTGGTTCAAGATCAAGGGTAATAAG  333
            |||||||||||||||||||||||||||||||||||||
Sbjct  336  ATGTGCCGATACTTGGTTCAAGATCAAGGGTAATAAG  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5