BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486973
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01060.1 | Symbols: | Protein kinase protein with tetratric... 2418 0.0
AT3G09240.1 | Symbols: | Protein kinase protein with tetratric... 1123 0.0
> AT5G01060.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr5:22740-24847 FORWARD LENGTH=1500
Length=1500
Score = 2418 bits (1309), Expect = 0.0
Identities = 1438/1501 (96%), Gaps = 5/1501 (0%)
Strand=Plus/Plus
Query 1 ATGGGATGCATTTGCTTCAAGTCTTGGCGCCGATCATCTTCTTCACCGTCGATTACATCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGATGCATTTGCTTCAAGTCTTGGCGCCGATCATCTTCTTCACCGTCGATTACGTCA 60
Query 61 ACGGTCATTGATGATCTAGAAAACGTC--AGAG-ACGATGTCGACGACGACGGAGGACAT 117
|||||||| |||||||| ||||||||| |||| |||||| |||||||||||||||||||
Sbjct 61 ACGGTCATAGATGATCTCGAAAACGTCAGAGAGTACGATGCCGACGACGACGGAGGACAT 120
Query 118 TATCCGTTGATTTTCCGTGAGTTCAGTTTAGAGCAGCTGAGAATCGCCACCGACGGTTTC 177
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TATCCGTTGATTTTCCGTGAGTTCAGTTTAGAACAGCTGAGAATCGCCACCGACGGTTTC 180
Query 178 TCCGCCGGAAACGTCGTCTCGGAGCACAATGATTCCGTACCAAACATCGTCTACAAGGGA 237
|||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 181 TCCGCCGGAAACATCGTATCGGAGCACAACGATTCGGTACCAAACATCGTCTACAAAGGA 240
Query 238 AAACTCGGAGACGGTCGTCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGAT 297
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAACTCGGCGATGGTCGTCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGAT 300
Query 298 CCTTTCGAATTCATCAATGAAGCACAAGCTGTTGGGAGATTGAGGAGTGAACATATGGCG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTTTCGAATTCATCAATGAAGCACAAGCTGTTGGGAGATTGAGGAGTGAACATATGGCG 360
Query 358 AATTTGATCGGTTGTTGTTGTGATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATTTGATCGGTTGTTGTTGTGATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCT 420
Query 418 AATGGAACACTAGCAAAGCATCTTTTTCACTGGGAGAAAAGACCGATGAAATGGGAAATG 477
||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AATGGAACATTAGCAAAACATCTTTTTCACTGGGAGAAAAGACCCATGAAATGGGAAATG 480
Query 478 AGGTTGAAAGTTGCTCTGCATACCGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATA 537
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 AGGTTGAAAGTTGCTCTGCATACTGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATT 540
Query 538 GATTTATACCATGATCTTAATCCTTACAGGATTATGTTTGATAAGACGGGGAATCCTAAG 597
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 541 GATTTATACCATGATCTTAATCCTTACAGGATTATGTTTGATAAGACAGGGATTCCTAAG 600
Query 598 CTTTCTTGCTTTGGTCTCATGAAGAATAGTCATGAAGGAAAGAATTATAGCACCAACTTA 657
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 601 CTTTCTTGCTTTGGTCTCATGAAGAATAGCCATGAAGGGAAGATTTATAGCACCAACTTA 660
Query 658 GCATTTGCTCCTCCCGAGTATTTGCGCCTTGGTACCGTGATACCGGAGAGCGTCCCATTT 717
|| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 661 GCTTTTGCTCCTCCCGAGTATTTGCGCCTTGGTACTGTGATAGCGGAGAGCGTCACATTT 720
Query 718 AGCTTTGGAACTCT-GTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCATGC 776
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCTTTGGAAC-CTTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCATGC 779
Query 777 ACTTGATTTGTTCAGAGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGGTCA 836
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACTTGATTTGTTCCGTGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGGTCA 839
Query 837 GTTCTCTGATGAAGACAGGACAGAACTAATACACATAGCTTCTCGATGTTTGAAGAGTGA 896
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct 840 GTTCTCTGATGAAGACAGGACAGAACTAATACACGTAGCTTCTCGATGTTTCAAGACTGA 899
Query 897 ACCTGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGCGACTCTTTCTAGACTTCAGAAACG 956
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACCAGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGCGACTCTTTCTAGACTTCAGAAACG 959
Query 957 AGCCAAGTTATGTCCTATTAATGTCAAAAGACCTATGTCTCCTCCATCAAACAATCTGCC 1016
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GGCCAAGTTGTGCCCTATTAATGTCAAAAGACCTATGTCTCCTCCATCAAAAAATCTGCC 1019
Query 1017 TGAAAAGACTAAATCTGCAAAAGAGTCATTGAAGTTGACTCCTTTCGGAGATGCGTGTTC 1076
||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 TGAAAAGACTAAACCTGCAACAGAGTCATTGAAGTTGACTCCTTTCGGAGATGCATGTTC 1079
Query 1077 GAGAGCAGATCTAAGTAGTATACATGAACTGCTAGAGAAACTTGGGTATGAAGAAGATGA 1136
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1080 TAGAGCGGATCTAAGTAGTATACATGAACTACTAGAGAAACTAGGGTATGAAGAAGATAA 1139
Query 1137 TGGGGTCGGTAACGAGTTTTCATTCCAAATGTGGACGGGTGAAATGCAAGAGAATATGGA 1196
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1140 TGGGGTTGGTAACGAGTTTTCATTCCAAATGTGGACCGGCGAAATGCAAGAGAATATGGA 1199
Query 1197 CTACAAGAAGCATGGAGATGTCGCGTTTCTTGCAAAAGATTTTGATACCGCCATTGAATT 1256
|||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 1200 CTACAAGAAGCATGGAGATGCCGCGTTTCTTGCGAAAGATTTTGATACTGCCATTGAATT 1259
Query 1257 CTACACAGAGTTCATGAGTGGAGCTCCTGCGGTGTCACCAACAGTATTGGCAAGAAGGTG 1316
||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1260 CTACACAGAGTTCATGACTGGAGCTCCTACGGTATCACCAACAGTATTGGCAAGAAGGTG 1319
Query 1317 TCTTTGTTACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGTGATGCGATGCAAGCGCA 1376
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1320 TCTTTGTTACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGCGATGCGATGCAAGCGCA 1379
Query 1377 AGTAGCTTCACCTGAATGGCCAATCCCTCTTTACTTACAAGCAGCTTGTCTCTTCAAGCT 1436
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1380 AGTAGCTTCACCGGAATGGCCAATTCCTCTTTACTTACAAGCGGCTTGTCTCTTCAAGCT 1439
Query 1437 AGAGATGGAAGCTGAAGCTAAAGAAGCAGTTAGACATGGTTCTGCTCTTGAGGCTTATTA 1496
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1440 AGAGATGGAAGCTGAAGCTAAAGAAGCACTTAGACATGGTTCTGCTCTTGAGGCTTATTA 1499
Query 1497 G 1497
|
Sbjct 1500 G 1500
> AT3G09240.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr3:2835668-2837956 REVERSE LENGTH=1434
Length=1434
Score = 1123 bits (608), Expect = 0.0
Identities = 1141/1393 (82%), Gaps = 57/1393 (4%)
Strand=Plus/Plus
Query 129 TTTCCGT-GAGTTCAGTTTAGAGCAGCTGAGAATCGCCACCGACGGTTTCTCCGCCGGA- 186
||||| | |||||||| || || ||| ||||| |||| || ||||| ||||||||| ||
Sbjct 75 TTTCC-TGGAGTTCAGCTTGGAACAGTTGAGAGTCGCAACTGACGGATTCTCCGCC-GAC 132
Query 187 AACGTCGTCTCGGAGCACAATGATTCCGTACCAAACATCGTCTACAAGGGAAAACTCGGA 246
||| |||| ||||||||||| || || || |||||||||||||| || | ||| |
Sbjct 133 AACATCGTGTCGGAGCACAACGAGAGGGTTCCTAACATCGTCTACAAAGGCCAGCTC-AA 191
Query 247 -GACGGTCG-TCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGATCCTTTCG 304
||||| | | ||||||||||| ||||||||| | ||||| ||||||||| |||| |
Sbjct 192 CGACGGAAGAAAG-ATCGCCGTCAAGCGGTTTCAACGGCTTTCATGGCCTGATTCTTTAG 250
Query 305 AATTCATCAATGAAGCACAAGCTGTTGGGAGATTG-AGGAGTGAACATATGGCGAATTTG 363
|||||||| | |||||||||||||| |||||| || |||||||| |||||||| ||||||
Sbjct 251 AATTCATCGAGGAAGCACAAGCTGTAGGGAGA-TGTAGGAGTGAGCATATGGCCAATTTG 309
Query 364 ATCGGTTGTTGTTGTG-ATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCTAATGG 422
||||||||||| | | | | | ||||||| || |||||||||||||| ||||||||||
Sbjct 310 ATCGGTTGTTGCTCAGAAGGTC-ACGAGAGGTTGCTTGTTGCTGAGTACATGCCTAATGA 368
Query 423 AACACTAGCAAAGCATCTTTTTCACTGGGAGAAAAGACCGATGAAATGGGAAATGAGGTT 482
|||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 369 AACACTTGCTAAGCATCTCTTTCACTGGGAGAAAAGACCAATGAAGTGGGAAATGAGGTT 428
Query 483 GAAAGTTGC-TCTGCATACCGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATAGATT 541
|| |||||| | | ||||| |||| ||| |||||||| ||||||||| ||||||||||
Sbjct 429 GAGAGTTGCGT-TACATACTGCAACAGCCTTGGAGTACTGTAATGATTGGGGAATAGATT 487
Query 542 TATACCATGATCTTAATC-CTTACAGGATTA-TGTTTGATAAGACGGGGAATCCTAAGCT 599
| || || |||||||| | | |||| || || ||||||| ||| |||||||||| |||
Sbjct 488 TGTATCACGATCTTAA-CACCTACA-GAATATTGTTTGACAAGGTTGGGAATCCTAGGCT 545
Query 600 TTCTTGCTTTGGTCTCATGAAGAATAGTC-ATGAAGGAAAGAATTATAGCACCAACTTAG 658
||||| ||||||||||||||| ||| | | || ||||||| ||||| |||||||| |
Sbjct 546 GTCTTGTTTTGGTCTCATGAAGTGTAGCCGA-GAGGGAAAGAGCTATAGTACCAACTTGG 604
Query 659 CATTTGCTCCTCCCGAGTATTTGCGCCTTGGTACCGTGATACCGGAGAGCGTCCCATTTA 718
||||||||||||| || ||||| || || ||||| |||||||||||||| ||| ||||||
Sbjct 605 CATTTGCTCCTCCTGAATATTTACGTCTAGGTACTGTGATACCGGAGAGTGTCACATTTA 664
Query 719 GCTTTGGAA-CTCTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCATGCA 777
|||| |||| || ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 665 GCTTCGGAACCT-TGTTACTGGATCTTATGAGCGGCAGACATATTCCACCAAACCATGCA 723
Query 778 CTTGATTTGTTCAGAGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGGTCAG 837
|||||| ||||| | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 724 CTTGATCTGTTCCGTGGTAAAAACTATTTGGTGCTAATGGATTCAGCTCTGGATGGTCAA 783
Query 838 TTCTCTGATGAAGACAGGACAGAACTAATACA-CATAGCTTCTCGATGTTTGAAGAG-TG 895
||||||||||| || || |||||||| || || | ||||||| || |||||| | ||
Sbjct 784 TTCTCTGATGAGGATAGAACAGAACTTATCCATC-TAGCTTCCCGCTGTTTGC-GCCCTG 841
Query 896 AACCTGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGC-GACTCTTTCTAGACTTCAGAAA 954
|||| || ||||||||||| ||||||||||||| | | | ||||||| |||||| |||||
Sbjct 842 AACCAGACGAGAGGCCAAGCATAAAGTTTCTTATGTCAG-CTCTTTCAAGACTTGAGAAA 900
Query 955 CGAGCCAAGTTATGTCCTATTAATGTCAAA-A-GAC--CTATGTCTCCTCCATCAAACAA 1010
|||| ||||||| || | | |||||| | || | || || |||||||| |||
Sbjct 901 AGAGCTGAGTTATGGCCCA--AC-GTCAAAGAAGAAAAC-ATCCCTACTCCATCATACA- 955
Query 1011 TCTG--CCTGAAAAGACTAAATCTGCAAAAGAGTCATTGAAGTTGACTCCTTTCGGAGAT 1068
||| |||| || | ||| | ||| ||||| ||||| |||||||||||
Sbjct 956 -CTGAACCTGCAA---C-AAA---G-----GAGCCATTGCCCTTGACCCCTTTCGGAGAA 1002
Query 1069 GCGTGTTCGAGAGCAGATCTAAGTAGTATACATGAACTGCTAGAGAAACTTGGGTATGAA 1128
|| || | ||||| ||||||||| |||| || ||||| || |||||||| ||||||| |
Sbjct 1003 GCATGCTGGAGAGTGGATCTAAGTGGTATGCACGAACTACTCGAGAAACTCGGGTATGGA 1062
Query 1129 GAAGATGATGGGGTCGGTAAC----GAGTTTTCATTCCAAATGTGGACGGGTGAAATGCA 1184
|| ||||||| ||| ||| || ||||| ||||||||||||||||||||| |||||||
Sbjct 1063 GAGGATGATGTGGT-GGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAAATGCA 1121
Query 1185 AGAGAATATGGACTACAAGAAGCATGGAGATGTCGCGTTTCTTGCAAAAGATTTTGATAC 1244
|||||||||||| ||||||||||| ||||||| ||| |||| ||| ||||||||||| ||
Sbjct 1122 AGAGAATATGGATTACAAGAAGCACGGAGATGCCGCATTTCGTGCTAAAGATTTTGAAAC 1181
Query 1245 CGCCATTGAATTCTACACAGAGTTCATGAGTGGAGCTCCTGCGGTGTCACCAACAGTATT 1304
||| || ||||||||||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct 1182 CGCAATCGAATTCTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACAGTATT 1241
Query 1305 GGCAAGAAGGTGTCTTTGTTACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGTGATGC 1364
|| ||| ||||||| ||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 1242 AGCCAGACGGTGTCTATGTTACCTAATGAGTGATATGTTCCGCGAGGCTCTAAGTGATGC 1301
Query 1365 GATGCAAGCGCAAGTAGCTTCACCTGAATGGCCAATCCCTCTTTACTTACAAGCAGCTTG 1424
||||||| | || || || || || || | | ||| |||| |||||||||||||||||
Sbjct 1302 GATGCAAACTCAGGTCGCATCGCCAGAGTTTTCGATCGCTCTCTACTTACAAGCAGCTTG 1361
Query 1425 TCTCTTCAAGCTAGAGATGGAAGCTGAAGCTAAAGAAGCAGTTAGACATGGTTCTGCTCT 1484
||| || ||||| | |||||| ||||||||||||||||| |||||||||| ||| ||||
Sbjct 1362 TCTTTTAAAGCTTGGGATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTCTTCTCT 1421
Query 1485 TGAGGCTTATTAG 1497
|| |||| ||||
Sbjct 1422 CGAAGCTTTTTAG 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5