BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486976
Length=2695
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01030.1 | Symbols: | Protein of unknown function (DUF3527)... 3321 0.0
> AT5G01030.1 | Symbols: | Protein of unknown function (DUF3527)
| chr5:9930-13235 FORWARD LENGTH=2728
Length=2728
Score = 3321 bits (1798), Expect = 0.0
Identities = 2431/2713 (90%), Gaps = 137/2713 (5%)
Strand=Plus/Plus
Query 1 TTCGATTGCTTACTAAAGCTTTCTCGATTAACGTTAATCAGAAGAAGAGATTTGGTTTAG 60
||||||| |||||||| |||||||||||| ||||||||| | |||||||||| |||||||
Sbjct 2 TTCGATTCCTTACTAAGGCTTTCTCGATTTACGTTAATCTG-AGAAGAGATTGGGTTTAG 60
Query 61 TGAATCTTGATTTCCGTGGTTGTGATTTTCGATTTTGCTTCTACTCCA----C--GTTGT 114
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 61 TGAATCTTGATTTCCGTGGTTGTGTTTTTCGATTTTGCTTCTACTCCACGTTCTTGTTGT 120
Query 115 TGTT---TTTTAGCTCCAGATTATAC---T-TTTTTGTTTTCTTCTCTTCGACGATATCT 167
|||| ||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 121 TGTTCCCTTTTAGCTCCAGATTATGCTTTTCTTTTTGTTTTCTTCTCTTCGACGATATCT 180
Query 168 GCCACCAACTCGAAGGT-T-AGGATT-A-G---GGTTTCTCGAGATGTTTTTAG-AGAT- 218
|||||||||||| | || | | | || | | |||| | | || ||||| | | ||
Sbjct 181 GCCACCAACTCG-A-GTCTCA-GTTTAATGAAATGTTTGT-G-GA--TTTTTGGTAAATA 233
Query 219 GTTCTGAAACAGAGCCAAAGAACATCGGAGATGGTAGAAAAGGAGGGTCAAGCAAGTGGC 278
|| || || | || |||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 234 GTACT--AATGGGGCTAAAGAACATCAGAGATGGCAGAAAAGGAGGGTAAAGCAAGTGGC 291
Query 279 ACTGACAATGTGAACCGGGTCAGAACGAAACGTTCAAGCCATAGTCGTCAAAAGGAATGT 338
|| ||||||| || ||||| | ||||||||||||||| |||||||||| ||||||||||
Sbjct 292 ACAGACAATGACAATCGGGTGAAAACGAAACGTTCAAGTCATAGTCGTCGAAAGGAATGT 351
Query 339 GTCAATGAGAGTTTGGAACATAATGATGAGCTTGTGAAATATATGTCCAAGTTGCCAGGT 398
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GTCAATAAGAGTTTGGAACATAATGATGAGCTTGTGAAATATATGTCCAAGTTGCCAGGT 411
Query 399 TATCTCCAACGTATAGATAGAGGTGAAGAAAGTG-T--TCAGAGTAATGTTTTGAATGTT 455
||||||||||||||||| |||||||||||||| | | ||| ||||||||||||||||||
Sbjct 412 TATCTCCAACGTATAGAGAGAGGTGAAGAAAGCGTTCATCAAAGTAATGTTTTGAATGTT 471
Query 456 GGGGTCTTGGATTGGGAACGTCTAGAGAAATGGAAGCATGGCCGAGCCAAAGGCGGTGAA 515
|| ||||||||||||||| ||||| ||| |||||||||||| ||||| ||||||||||||
Sbjct 472 GGAGTCTTGGATTGGGAAAGTCTACAGAGATGGAAGCATGGTCGAGCAAAAGGCGGTGAA 531
Query 516 AGATCAGGAA-AATCTGAGAGAAAAGTGTCTACTATTG---------CTACTTCAGGAGT 565
| |||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 532 ATATCAGGAAGAA-GTGAGAGAAAAGTGTCTACTATTGCTACTACTTCTACTTCAGGAGT 590
Query 566 --T-GTTCCCAATGACTCAGCTAATAGGTGCAAGATTGATGACC-AGTTGCCTACTTGTT 621
| |||||||||||||| ||||||||||| ||||||||||||| || ||| ||||||||
Sbjct 591 AGTAGTTCCCAATGACTCGGCTAATAGGTGTAAGATTGATGACCAAG-TGCATACTTGTT 649
Query 622 CGAATCTCGGTAAAGTTAAAGCTTCCCGGGATCTTCAACATTCTCTTCACGGAGTTAGAT 681
|||||||||||||||||||||||||||||||||||||| |||||| | || | |
Sbjct 650 CGAATCTCGGTAAAGTTAAAGCTTCCCGGGATCTTCAATATTCTC-T-----AG--A-A- 699
Query 682 GCACTTTTGATCCTGAGTTGGCTTCTAGGGATTCATTAAATAAGCAGGAACTAGCAACTT 741
| | | | || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 700 -C-C------T-C--AGCTGGCTTCTAGGGATTCATTAAATAAGCAGGAAATAGCAACTT 748
Query 742 GTAGCTATAAGTCCTCTGGTAGAGATCACAAAGGAGTTGAACCAAGGAAGAGCAGAAGAA 801
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 749 GTAGCTATAAGTCCTCTGGTAGAGATCACAAAGGAGTAGAACCGAGGAAGAGCAGAAGAA 808
Query 802 CGCATTCAAACCGGGAATCAACTTCAGGTTTATTGTCAGAAATGGGAAACTCTGGGGGGT 861
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| | ||
Sbjct 809 CGCATTCAAACCGGGAATCCACTACAGGTTTATCGTCAGAAATGGGAAACTCT--GCGG- 865
Query 862 CACTGGTCATCAAGAGAAACTTAGTTGTCCGGGATAAGGAGACTCAGAAGAGAGCAGGGG 921
|| || || | || |||||||||| ||||||||||||||||||||||
Sbjct 866 ----GG---TC-------AC-T--TT-TCCGGGATAAAGAGACTCAGAAGAGAGCAGGGG 907
Query 922 AGATACATACAAAAGAAGCAAGAGAAAGAGCTAAAGAATGTGTTGAGAAGTTAGATGGCG 981
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 908 AGATACATGCAAAGGAAGCAAGAGAAAGAGCTAAAGAATGTGTTGAGAAGTTAGATGG-G 966
Query 982 G-TGAGAAGATCATTTGCGATTCGAAAGCTGGTCATACTTCTGAAAAGCAGGAGTTGAGC 1040
| ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||
Sbjct 967 GATGAGAAGATCATTGGCGATTCGGAAGCTGGTCTTACTTCTGAAAAGCAGGAGTTCAGC 1026
Query 1041 AACATTTTTCTCCTTCGATCAAGAAAACAGTCCCGAGGCACTCTTTCCGGTGAGCCCCAA 1100
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1027 AACATTTTTCTCCTTCGATCAAGAAAACAGTCCCGAAGCACTCTTTCCGGTGAGCCTCAA 1086
Query 1101 ATCTCTAGGGAGGTTAACCGCTCTCTAGACTTTTCCGACAGAATCAATAGCTCTTTAGGA 1160
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1087 ATCTCAAGGGAGGTTAACCGCTCTCTAGACTTTTCCGACGGAATCAATAGCTCTTTCGGA 1146
Query 1161 TTGAGCTCTCAAACTCCTCGTTCCTGTCCACTCTCTTTCGACTTAGAGAGAGATTCTGAA 1220
||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TTGAGATCTCAAATTCCTAGTTCCTGTCCACTCTCTTTCGACTTAGAGAGAGATTCTGAA 1206
Query 1221 GATATGATGTTGCCTCTTGGTACTGATATATCTGGTAAAAAGGAACGGTTTGGTGGGAAA 1280
||||||||||||||||||||||||||| | |||||| |||| | | |||||||||
Sbjct 1207 GATATGATGTTGCCTCTTGGTACTGATCTTTCTGGT-AAAA-G-A------GGTGGGAAA 1257
Query 1281 AGGCATTCAAAGACAGCTTCAAGGATATTTGATCTAGAATTTCCTGAAGATGAGTCCAGA 1340
||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1258 AGGCATTCAAAGACAACTTCAAGGATATTTGATCGAGAATTTCCTGAAGATGAATCCAGA 1317
Query 1341 AAGGAGAGACACCCTTCACCGAGCAAGCGGTTTAGTTTTAGTTTTGGTCGTCTCAGCCGA 1400
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 AAGGAGAGACACCCTTCACCAAGCAAGCGATTTAGTTTTAGTTTTGGTCGTCTCAGCCGA 1377
Query 1401 AGTTTCAGCGTAAAAGAGATTTCAGCTGGCCAACCTTTGAGTTCTTCTGAGGATACTATC 1460
| ||||||| | ||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1378 AATTTCAGCCTGAAAGATATTTCAGCCGGCCAACCTTTGAGTTCTTCTGAGGATACCATT 1437
Query 1461 AAGTCTGGTTCTATGAGATTTGATGGTTCAGTTTGTCCATCTCAGTCAAGTAATCCGGAG 1520
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1438 ATGTCTGGTTCTATGAGATTTGATGGTTCAGTTTGTCCATCTCAGTCAAGTAACCCGGAG 1497
Query 1521 AAC-A---CAC--ATTGCAGATCTCGAGTTAGCCCTCTAAGACGGTTTCTTGACCCTTTA 1574
||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 AACCAGAACACTCATTGCAGATCTCGAGTTAGCCCTCTAAGGCGGTTTCTTGACCCTTTA 1557
Query 1575 CTGAAACCCAAAGGCTCTGAAAATGTTCTTCCATCAAAAGCAAGATCAAGTTCTTTCAAT 1634
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1558 CTGAAACCAAAAGCCTCTGAAAGTGTTCTTCCATCAAAAGCAAGATCAAGTTCTTCCAAT 1617
Query 1635 CCAGAGCCAACAACCAACAGCAACGTACCACTTCAAGGCGAAAAGAAGCAGGATACATTG 1694
||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |
Sbjct 1618 CCAAAGCCAATAACCAACAGCAACGTACCACTTCAAGATGAAAAGAAGCAGGATGCATCG 1677
Query 1695 AGAACCCGAGCTATTTTTCAGCTCACAATCAGAAATGGCATCCCTCTGTTTCAATTTGTG 1754
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1678 AGAACCCTAGCTATTTTTCAGCTCACAATCAGAAATGGCATCCCTTTGTTTCAATTTGTG 1737
Query 1755 GTCGATGATAACAATAACAGCAGCAGCAGGAGCATTCTCGGGGCTACAATGAAGAGCTCG 1814
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1738 GTCGATGATAACAG---CAGCAGCAGCAGGAGCATTCTCGGGGCTACAATGAAAAGCTCA 1794
Query 1815 GATTCATCGCTCAAAGATGATTCTGTTCAGTACTGCACATTCTACTCTGTTAATGAGGTC 1874
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1795 GATTCATCGTTCAAAGATGATTCTGTTCAGTACTGCACATTCTACTCTGTTAATGAAGTC 1854
Query 1875 AAAAAGAAGAAAAGCGGAAGCTGGCTAATCCATGGACACAAAGAGAAACACTGCGGGTTC 1934
|||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1855 AAAAAGAAAAAAAGTGGAAGCTGGCTAATCCATGGACACAGAGAGAAACATTGCGGGTTC 1914
Query 1935 GTCTACAATGTAATCGGTCAAATGCAGTTGGGAAACTCAATGAACGTAGATATATCAGAG 1994
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1915 GTCTACAACATAATCGGTCAAATGCAGTTGGGAAACTCAATGAGCGTAGATATATCAGAG 1974
Query 1995 CAGAAATCTGAAATCATCTCTCCTGTGATCACAGAATCAGTTCTGTTTGACGAGTCAGAG 2054
||||||||| | | | |||||||| ||||||||||||||||| ||||||
Sbjct 1975 CAGAAATCT----T--T-------G--ATCACAGAGTCAGTTCTGTTTGACGAATCAGAG 2019
Query 2055 CAAGTAAAAGGGAGGAGGGAGGTTGCAGCTGTAGTGATCAAGAAGAAGCCGGTCGAAGGA 2114
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2020 CAAGTAAAAGGGAGGAAGGAGGTTGCAGCTGTAGTGATCAAGAAGAAGCCTGTCGAAGGA 2079
Query 2115 AGCTGTACCAGCCTC-ATGGAAACGAGTGTGATCATTCCTGGCGACGTTCACAGCTTCCC 2173
|||| ||||||| || | |||||| |||||||| ||||| |||| |||||||||||||||
Sbjct 2080 AGCTATACCAGCTTCGA-GGAAACTAGTGTGATAATTCCAGGCGGCGTTCACAGCTTCCC 2138
Query 2174 GGAGAAAGGAGCACCATCGCCATTGATTAGCCGGTGGAGATCTGAAGGGTTATGCGACTG 2233
|||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 2139 CGAGAAAGGAGCACCGTCGCCATTGATTAGCCGGTGGAGGTCTGGAGGGTTATGCGACTG 2198
Query 2234 CGGTGGCTGGGATGTTGGATGTAAACTCCGTGTCCTCTCCAACAAAATAGTCCCCCATGA 2293
||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |
Sbjct 2199 CGGTGGCTGGGATGTTGGATGTAAACTACATGTCCTCTCCAACAAAACAGTCCTCCATAA 2258
Query 2294 ATTCAACCAAAGCTTCACACTTTTCGATCAGGAAG-GAAGTGAACAAGACTCGGGTCCGG 2352
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
Sbjct 2259 ATTCAACCAAAGCTTCACACTTTTCGATCAGGAAGTGA-GTGAACAAGACTCGAGTCCAG 2317
Query 2353 TTTTGACTATGACGGAGCTGAAGACAGGGATCTATAGGGTGGAGTTTGGTTCGTCTGTTT 2412
|||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2318 CTTTGGCGATGACAGAGCTGAAGACAGGGATCTATAGGGTGGAGTTTGGTTCGTTTGTTT 2377
Query 2413 CGCCGTTACAAGCCTTTTTTGTGTGTGTGACGGTACTAACATGTGCTTCCGAGGCAAAGA 2472
| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2378 CACCGTTACAAGCGTTTTTTGTGTGTGTGACGGTACTAACATGTGCTTCCAAGGCAAAGA 2437
Query 2473 CCACCGGAAAATCTTCTTCTCCTATGGCTCCGCCGCTATCTCCCGTTGGTAGAGTCTAAA 2532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438 CCACCGGAAAATCTTCTTCTCCTATGGCTCCGCCGCTATCTCCCGTTGGTAGAGTCTAAA 2497
Query 2533 CGCAGGACACAGGTAGAG--TATCTAATGATCGTTTTTTCTTTCATATAAATTCCCAACG 2590
| |||||||||| ||||| ||||||||||||||| | ||||| |||||||||| ||||
Sbjct 2498 CTCAGGACACAGATAGAGAGTATCTAATGATCGTTAT--CTTTCTTATAAATTCCTAACG 2555
Query 2591 TTGTATACTCTTGTGTTGTGTCCAAAAAGACTTAAAATCATAAGAGCATACACTACTATT 2650
|||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 2556 TTGTATGCTCTTGTGTTGTGTCCAAAAAGACTTAAA-TCATAAGAGTATACACTACTATT 2614
Query 2651 AAAGTCACACTAT 2663
||||| |||||||
Sbjct 2615 AAAGTTACACTAT 2627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133845403924
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5