BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486978
Length=2054
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleoti... 3066 0.0
> AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide
exchange factor 7 | chr5:383153-385850 FORWARD LENGTH=2133
Length=2133
Score = 3066 bits (1660), Expect = 0.0
Identities = 1963/2099 (94%), Gaps = 61/2099 (3%)
Strand=Plus/Plus
Query 1 GAGAAGATAAAGTTGGTGTTTTTAAA-CTTATGTTgagaaagatgcagagagatcgagga 59
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 31 GAGAAGATAAAGTTGGTGTTTTTAAATCTTATGTT--G-AAGATGCAGAGAGATCGAGGA 87
Query 60 agagagagcaagagaACCTCTTCACTCACAGACCCAGTCACTGCAttttcttttcttttc 119
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 88 AGACAGAGCAAGAGAACCTCTTCACTCACAGACCCACTCACTGCATTTTCTCTTCTTTTC 147
Query 120 tcggaaaatatatctttttt--cccgagaaaattttcCCA-AAGAATCAGATCGAACAAA 176
|| | ||| ||| ||||||| ||||||||||| || ||| ||||||||||||||||||
Sbjct 148 TCAG-AAA-ATA-CTTTTTTCCCCCGAGAAAATGTT-CCACAAGAATCAGATCGAACAAT 203
Query 177 AAGGGTTCTCTTTAATGTAATGCGATTCAAGCACGAGACTAT-C-CAGAGAGATA-AAAG 233
|||||||||| | ||||||||||||||||||||||||| ||| | |||||||| | | ||
Sbjct 204 AAGGGTTCTCATAAATGTAATGCGATTCAAGCACGAGAATATCCACAGAGAGAGATACAG 263
Query 234 -AGGCTCC---------TTTGAGCAAGTTTCAGAAATCGACGAC--TG--T--------G 271
||||||| |||||||||||||||||| |||| ||| || | |
Sbjct 264 AAGGCTCCTTTTGAGTATTTGAGCAAGTTTCAGAACTCGAAGACTGTGTTTGAAAGAGAG 323
Query 272 -TT------T-G-AATAATGGGTGGTTCGTCGGAAGATTTGCGAGAAGTGGAAGAGAAAG 322
|| | | |||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 324 ATTCAGGCGTAGTAATAATGGATGGTTCGTCGGAAAATTTGCCAGAAGTGGAAGAGAAAG 383
Query 323 GTAGAGAAAGCAGTTGCTGCAGCTCGGAAACAACCAGAC-A-A-GAGGAAGAACAAAGTC 379
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |
Sbjct 384 GTAGAGAAAGCAGTTGCTGCAGCTCGGAAACAACCAGACAAGAGGAGGAAGAACAAAGCC 443
Query 380 CTAGCTGTACGGAGGATTTCACGGCTTCTCCGGTTTCATCTCGTTGGTCTGTGAAGAACA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CTAGCTGTACGGAGGATTTCACGGCTTCTCCGGTTTCATCTCGTTGGTCTGTGAAGAACA 503
Query 440 TCGATGGAGAGAAGAAGAAAATTCGTTCGGATTCAAGAGTTTCAGAGGTTGAGATGATGA 499
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TCGATGGAGAGAAGAAGAAGATTCGTTCGGATTCAAGAGTTTCAGAGGTTGAGATGATGA 563
Query 500 AGGAAAGATTTTCGAAGCTGTTACTTGGGGAAGATATGTCAGGTTCTGGAAATGGTGTCT 559
|||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 564 AGGAAAGATTTTCGAAACTGCTGCTTGGAGAAGATATGTCAGGTTCTGGAAATGGTGTCT 623
Query 560 GCACAGCTTTAGCTATCTCAAACGCAATTACTAATCTTTGTGCTACCTTGTTTGGGCAAC 619
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 624 GTACAGCTTTAGCTATCTCAAACGCAATCACTAATCTTTGTGCTACCTTGTTTGGACAAC 683
Query 620 TATGGAGGTTAGAACCACTGCCTACAGAGAAGAAAGAGATGTGGAGAAGAGAAATGGAAT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TATGGAGGTTAGAACCACTGCCTACAGAGAAGAAAGAGATGTGGAGAAGAGAAATGGAAT 743
Query 680 GGCTTCTCTGTGTCAGTGATCACATTGTAGAGATGACTCCAACTTGGCAAACATTTCCTG 739
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 744 GGCTTCTCTGTGTCAGTGATCACATTGTAGAGATGACTCCTACTTGGCAAACATTTCCTG 803
Query 740 ATGGAACCAAACTTGAGATAATGACTTGCAGACCAAGATCAGATCTTTATGTTAACCTCC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 ATGGAACCAAACTTGAGATAATGACTTGCAGACCAAGATCAGATCTTTATGTTAACCTCC 863
Query 800 CAGCTCTCAGGAAACTAGATAACATGCTTCTTGAGATATTAGATAGTTTTGAGGAGACAG 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 CAGCTCTCAGGAAACTAGATAACATGCTTCTTGAGATATTAGATAGTTTTGAGGAGACAG 923
Query 860 AGTTTTGGTATGTTGACCAAGGAATCATGGCGCACGAATCAGCAACGGACGACGGATCAT 919
||||||||||||||||||||||||||||||| |||||||||||| |||||| | |||||
Sbjct 924 AGTTTTGGTATGTTGACCAAGGAATCATGGCACACGAATCAGCAGCGGACG--G-ATCAT 980
Query 920 CTTCTTTCCGAAAATCTTTTCAGAGACAAGAAGACAAATGGTGGCTTCCTGTTCCACGGG 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CTTCTTTCCGAAAATCTTTTCAGAGACAAGAAGACAAATGGTGGCTTCCTGTTCCACGGG 1040
Query 980 TTTCACAAGGAGGTTTACAAGAAAACTCAAGAAAACAGTTGCAGCATAAACGCGACTGCA 1039
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1041 TTTCACCAGGAGGTTTACAAGAAAACTCAAGAAAACAGTTGCAGCATAAACGCGACTGTA 1100
Query 1040 CTAATCAGATATTAAAAGCTGCTATGGCCATCAACAGTATCACACTCGCCGACATGGAAA 1099
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1101 CTAATCAGATATTAAAAGCTGCTATGGCCATCAACAGTATCACACTCGCTGACATGGAAA 1160
Query 1100 TCCCTGAATCATACCTCGAATCTCTTCCGCGGAAAGGAAGATCCTGTCTCGGTGACTTAA 1159
|||||||||||||||| |||||||||||||||||||| ||||| || || ||||||||||
Sbjct 1161 TCCCTGAATCATACCTTGAATCTCTTCCGCGGAAAGGGAGATCTTGCCTTGGTGACTTAA 1220
Query 1160 TCTACAGATACATTTCATCGGATCAATTCTCACCTGAATGTCTTCTTGATTGCCTTGACT 1219
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1221 TCTACAGATACATTTCATCGGATCAATTTTCACCTGAATGTCTTCTTGATTGCCTTGACT 1280
Query 1220 TATCCTCTGAACATCAAGCCATAGAGATAGCTAACCGAGTCGAGTCATCGATCTATCTAT 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 TATCCTCTGAACATCAAGCCATAGAGATAGCTAACCGAGTCGAGTCATCGATCTATCTAT 1340
Query 1280 GGCACAAAAGAACTAATTCCAAACCATCTACTAATACCAAAACGTCATGGGAAATGGTGA 1339
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1341 GGCACAAAAGAACTAATTCCAAACCAGCTACTAATACCAAAACGTCGTGGGAAATGGTGA 1400
Query 1340 AAGAACTAATGGTTGATGCTGACAAGCTAGAGTTGATGGCGGATCGAGCTGAAAGTTTAT 1399
||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||
Sbjct 1401 AAGAACTAATGGTTGATGCAGATAAGCTAGAGCTAATGGCGGATCGAGCTGAAAGTTTAT 1460
Query 1400 TGCTTTCTTTAAAACAACGATTCCCAGGTCTCCCTCAAACCGCTCTAGACATGAGCAAAA 1459
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1461 TGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAA 1520
Query 1460 TCCAATACAACAAGGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTAGAGA 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TCCAATACAACAAGGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTAGAGA 1580
Query 1520 GCTTAGCTTTCAACATTGTTGCACGTATCGATGACTTGCTCTTTGTTGATGATCTTACAA 1579
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1581 GCTTAGCATTCAACATTGTTGCACGCATCGATGATTTGCTCTTTGTTGATGATCTTACAA 1640
Query 1580 GACATTCATCAGATCAGATTCCAACAACATTAGGCAACAACGGGAATGACTCTCCTAAGA 1639
|||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1641 GACATTCATCGGATCAGATTCCTACAACATTAGGCAACAACGGGAATGACGCTCCTAAGA 1700
Query 1640 GCATTGCAGTGCCAGTCTCAAACTACACAACTCCGAGCTACTCGCCATCAAAACAGGAGC 1699
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1701 GCATTGCAGTGCCGGTTTCAAACTACACAACTCCGAGCTACTCGCCTTCAAAACAGGAGC 1760
Query 1700 TCCGATCATCAATCACCGTTCCGCCATCTCCTTCCCGGTTCAAGATTCCTCACAGTAGCA 1759
| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1761 TTCGATCATCAATTACAGTTCCACCATCTCCCTCCCGGTTCAAGATTCCTCACAGTAGCA 1820
Query 1760 GTGTTAAAAGGGTTTTGACGGCTTATGTAACAAAGAACGAACCAAGATTGAAGGATCGTT 1819
||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 1821 GTGTTAAAAGGGTTTTGACAGCTTATGTAACAAAGAACGAACCAAGACTGAAGAATC-TT 1879
Query 1820 C-TGTAGAAACACCAAGCCGTTCTTCGTCGAGTGAGAGATTGTCTCTCGAGAAATGCATG 1878
| | |||||| | | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1880 CCTTTAGAAAGATCGAGCCGTTCTTCGTCGAGTGAGAGATTGTCTCTGGAGAAATGCATG 1939
Query 1879 AAGGAGTCGTTGAATGTATCGAACCTTGATCCTGGGATTTGAATTACTACTCCTCCTTGG 1938
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 1940 AAGGAGTCGTTGAATGTATCGAACCTTGATCCTGGGATTTGAATTAC--CTACACCTTGG 1997
Query 1939 AAAAGTCTCTGTTTTTGGATCCCTTTTCCTATCAATGTTTTTATATAATGTTTATTATTC 1998
|||||||||||||||||||||||||||||| ||| | | || |||||||||||||||||
Sbjct 1998 AAAAGTCTCTGTTTTTGGATCCCTTTTCCTTTCAGTATCTTC-TATAATGTTTATTATTC 2056
Query 1999 TTTCTT----GTGTGTAGTTTTAGATTTGTATAATAATAATTGGAAAGATAGACTTTGA 2053
|||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 2057 TTTCTTTCTTGTGTGTAGTTT-AGATTTGTATAATAATAATTGGAAAGATGGGCTTTGA 2114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101806705260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5