BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486980
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02030.1 | Symbols: LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | PO... 3029 0.0
> AT5G02030.1 | Symbols: LSN, PNY, HB-6, BLR, RPL, BLH9, VAN |
POX (plant homeobox) family protein | chr5:395634-399041 FORWARD
LENGTH=2017
Length=2017
Score = 3029 bits (1640), Expect = 0.0
Identities = 1900/2018 (94%), Gaps = 47/2018 (2%)
Strand=Plus/Plus
Query 1 tctctctctcttaacctctcgtttcccccattatctcttacactgttactatatctctct 60
|||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||
Sbjct 13 TCTCTCTCTCTTAACCTCTCGTTT-CGCCATTATCTCTTACACTGTTACTCTCTCTCTCT 71
Query 61 c-t-ttctTCTGCATC-TCATC-G-A---CAT---CATCATCCTCTT-CCATGGCTGATG 108
| | ||||||| | || || || | | ||| ||||||||| || ||||||||||||
Sbjct 72 CTTCTTCTTCTTCTTCTTCTTCTGCATCTCATCGACATCATCCT-TTCCCATGGCTGATG 130
Query 109 CATACGAGCCTTATCATGTTCTTCAACAAAGCCGTCGAGACAAACTTCGGATTCCTTCTC 168
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 131 CATACGAGCCTTATCATGTTCTTCAACAAAGCCGGCGAGACAAACTTCGTATTCCATCTC 190
Query 169 TCGATTCTCACTTCCACTTTCACCCTCCTCCTCCTTCTTCCTCCGGCGGAGGCGGTGGCG 228
||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 191 TCGATTCCCACTTCCACTTTCACCCTCCTCCTCCTCCTTCCTCCGGCGGCGGAGGTGGCG 250
Query 229 TCTTTCCTCTCGCCGATTCTGATTTCCTTGCAGCCGGTGGCTTTCACTCCAACAACAACA 288
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 251 TCTTTCCTCTCGCTGATTCCGATTTCCTCGCAGCCGGTGGCTTTCACTCCAACAACAACA 310
Query 289 CCAACCACATATCTAACCCTAGCTACAGTAATTCCATGGGATTTCTCGGTGGCCCTTCTT 348
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 311 ACAACCACATATCTAACCCTAGCTACAGTAATTTCATGGGATTTCTCGGTGGCCCTTCTT 370
Query 349 CTTCATCATCCACCGCAGTCGCAGTCGCCGGAGATCATTCCTTTAACGCCGGACTTTCTT 408
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 371 CTTCTTCATCCACCGCAGTCGCCGTCGCCGGAGATCATTCCTTTAACGCCGGACTTTCTT 430
Query 409 CCGGGGACGTACTCGTCTTTAAACCCGAGCCTTTATCTCTATCTTTGTCCTCACACCCTA 468
|||| ||||| || ||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 431 CCGGAGACGTTCTTGTCTTCAAACCCGAGCCTCTATCTCTATCTTTGTCCTCTCACCCTA 490
Query 469 GACTCGCTTACGATCTAGTCGTTCCTGGTGTTGTTAACTCCGGATTCTGTAGATCTGCCG 528
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 491 GACTCGCTTACGATCTAGTCGTTCCCGGTGTTGTTAACTCCGGATTCTGTAGATCTGCCG 550
Query 529 GTGAAGCCAACGCCGCCGCCGTCACCATCGCGTCCAGAAGCTCTGGCCCTCTCGGGCCTT 588
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 551 GTGAAGCCAACGCCGCCGCCGTCACCATCGCGTCTAGAAGCTCTGGTCCTCTCGGACCTT 610
Query 589 TCACGGGCTACGCATCGATTCTTAAAGGATCAAGATTCTTGAAACCAGCACAGATGCTTC 648
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 611 TCACGGGCTACGCGTCGATTCTTAAAGGATCAAGGTTCTTGAAACCAGCACAGATGCTTC 670
Query 649 TTGATGAGTTTTGTAATGTGGGTCGTGGGATTTACACCGACAAAGTCATCGACGACGATG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TTGATGAGTTTTGTAATGTGGGTCGTGGGATTTACACCGACAAAGTCATCGACGACGATG 730
Query 709 ATTCTTCTCTGCTTTTTGATCCGACGGTTGAGAATCTCTGCGGTGTTCCTGATGGCGGCG 768
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 731 ATTCTTCTCTGCTTTTTGATCCGACGGTTGAGAATCTCTGCGGTGTTTCTGATGGCGGCG 790
Query 769 GAGGAGATAATGGAAAGAAAAAATCAAAACTCATCTCCATGCTCGACGAGGTTTACAAGA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 GAGGAGATAATGGAAAGAAAAAATCAAAACTCATCTCCATGCTCGACGAGGTTTACAAGA 850
Query 829 GGTATAAGCAATACTATGAGCAGCTACAAGCTGTGATGGGCTCATTCGAATGCGTTGCAG 888
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 851 GGTATAAGCAATACTATGAGCAGCTACAAGCTGTGATGGGATCATTCGAATGCGTTGCAG 910
Query 889 GTCTTGGGCACGCTGCTCCGTACGC-AACCTTAGCCTTAAAAGCATTGTCTAAGCATTTC 947
|||| |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 911 GTCTCGGGCACGCTGCTCCGTACGCTAAC-TTAGCCTTGAAAGCATTGTCTAAGCATTTC 969
Query 948 AAGTGTTTGAAGAATGCTATAACGGACCAGCTTCAATTCAGCCACAATAACAAGAT--A- 1004
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 970 AAGTGTTTGAAGAATGCTATAACGGACCAGCTTCAATTCAGCCACAACAACAAGATCCAA 1029
Query 1005 CAACAACAACAATGTGGTCATCCGATGAACTCCGAGAATAAGACTGATTCTTTGAGATTT 1064
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1030 CAACAACAACAATGTGGTCATCCGATGAACTCTGAGAATAAGACTGATTCTTTAAGATTT 1089
Query 1065 GGAGGAAGTGATAGTTCTAGAGGCTTTTGTTCTGCTGGTCAAAGACATGGATTTCCTGAT 1124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1090 GGAGGAAGTGATAGTTCTAGAGGCTTATGTTCTGCTGGTCAAAGACATGGATTTCCTGAT 1149
Query 1125 CATCATGCTCCTGTTTGGAGACCGCACCGTGGCCTACCCGAACGTGCTGTTACCGTTCTA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1150 CATCATGCTCCTGTTTGGAGACCGCACCGTGGCCTACCCGAACGTGCTGTTACTGTTCTA 1209
Query 1185 AGGGCTTGGCTCTTCGATCATTTCTTGCATCCTTATCCAACGGATACAGACAAACTCATG 1244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1210 AGGGCTTGGCTCTTCGATCATTTCTTGCATCCTTATCCAACAGATACAGACAAACTCATG 1269
Query 1245 CTGGCTAAGCAGACGGGTCTCTCTAGAAATCAGGTATCGAATTGGTTCATAAACGCAAGA 1304
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1270 CTGGCTAAGCAGACAGGTCTCTCCAGAAATCAGGTATCGAATTGGTTCATAAACGCAAGA 1329
Query 1305 GTTAGGGTTTGGAAACCGATGGTGGAAGAGATTCACATGCTGGAGACTCGACAATCTCAG 1364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GTTAGGGTTTGGAAGCCGATGGTGGAAGAGATTCACATGCTGGAGACTCGACAATCTCAG 1389
Query 1365 AGATCTTCTTCTTCTTCTTGGAGAGACGAACGTAGTAGCACCACCGTCTTCCCTGacaac 1424
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1390 AGATCTTCTTCTTCCTCTTGGAGAGACGAACGTACTAGCACCACCGTCTTCCCTGACAAC 1449
Query 1425 aacaacaacaacCCATCTTCCTCCGCGGTACAGCAAAGAGCTAACAACTCACCTCCGGCT 1484
| |||||||||||||||||| ||| ||| |||||||||| ||||||||||| ||||| ||
Sbjct 1450 AGCAACAACAACCCATCTTCGTCCTCGGCACAGCAAAGACCTAACAACTCATCTCCGCCT 1509
Query 1485 AGACGGACTCGAAACGACGACGTTCATGGCCC---CAACAACAACAGCTATGTAAACAGT 1541
|||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1510 AGACGGGCACGAAACGACGACGTTCATGGCACAAACAACAACAACAGCTATGTAAACAGT 1569
Query 1542 GGGAGCGGCGGCGGTGGTAGCGCGGTTGGCTTCTCGTATGGAATTGGGTCGTCGAATGTG 1601
||||||||||||||| || ||| | |||| ||||||||||||||||||||||||||||||
Sbjct 1570 GGGAGCGGCGGCGGTAGT-GCG-G-TTGGTTTCTCGTATGGAATTGGGTCGTCGAATGTG 1626
Query 1602 CCGGTGATGAATAACAGCACAAACGGAG---TGTCGTTGACGTTAGGGCTTCATCATCAG 1658
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1627 CCGGTGATGAATAGCAGCACAAACGGAGGAGTGTCTTTGACGTTAGGGCTTCATCATCAG 1686
Query 1659 ATTGGGTTACCGGAGCCTTTCCCGATGACAACTGCTCAGAGGTTTGGGCTTGACGGTGGT 1718
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1687 ATTGGGTTACCGGAGCCTTTTCCGATGACAACTGCTCAGAGGTTTGGGCTTGATGGTGGT 1746
Query 1719 AGTGGCGACGGGGGTGGTGGTGGTGGGTATGAAGGGCAAAATCGTCAGTTTGGGAGAGAT 1778
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 AGTGGCGA------TGGTGGTGGTGGGTATGAAGGGCAAAATCGTCAGTTTGGGAGAGAT 1800
Query 1779 TTTATTGGTGGTAGTAATCATCAGTTTCTACATGATTTTGTAGGATGAGATTATTTGTGT 1838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1801 TTTATTGGTGGTAGTAATCATCAGTTTCTACATGATTTTGTAGGTTGAGATTATTTGTGT 1860
Query 1839 GGAAAGAAAAGaaaaaaaTGTTTGACGTTTGGGTATGTATAAGA---TATGGGGGAATTG 1895
|||||| ||| ||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1861 GGAAAGGAAA-AAATA--TGTTTGACGTTTGGGTATGTATAAGAAGATATGGGGGAATTG 1917
Query 1896 AAATGCATATGATGTGTATATTAGAACGTTTTCTTCTTCTTATTTTGTTTGTTT-C---C 1951
|||||||||||||||||||||||||| |||| ||||||||| ||||||| |||| | |
Sbjct 1918 AAATGCATATGATGTGTATATTAGAATGTTT-CTTCTTCTTTTTTTGTT-GTTTGCTTAC 1975
Query 1952 TTTCACAAATGGAATTCTTTTTAAGGAATGAAATTGGA 1989
||||||||||| || ||||||||| ||||||||||||
Sbjct 1976 TTTCACAAATGTTAT-CTTTTTAAGAAATGAAATTGGA 2012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98543669835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5