BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486981
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02040.1 | Symbols: PRA1.A1 | prenylated RAB acceptor 1.A1 |... 1175 0.0
> AT5G02040.1 | Symbols: PRA1.A1 | prenylated RAB acceptor 1.A1
| chr5:400899-402951 FORWARD LENGTH=1296
Length=1296
Score = 1175 bits (636), Expect = 0.0
Identities = 731/777 (94%), Gaps = 5/777 (1%)
Strand=Plus/Plus
Query 171 GTTAACTAGGGATTGTGGAATCAGAAGTGTTGAGAGTTTTGTGATCGGAGATTATGGATT 230
|||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 213 GTTAACTAAGGATTGTGGAATCAGAAGTGTTGTG-TTTTTGTGATCGGAGATTATGGATT 271
Query 231 GGGGAAACGTAACGGTGGAGGATCTCGTCGATGCTCTCCGAGAAGTTGACTGGTCTTCTC 290
|||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||
Sbjct 272 GGGGAAACGTAACGGTTGATGATCTCTTCGATGCTCTCCGAGAAGTTGACTGGTCGTCTC 331
Query 291 CGCCGCGTCCGCCGTCTGAGTTCTTCTCTAGGTTCACCGTTCCTAAATCCT-TCGCTAAA 349
|||||||||| ||||||||||||||||| ||||||||||||||||||| || || |||||
Sbjct 332 CGCCGCGTCCTCCGTCTGAGTTCTTCTCAAGGTTCACCGTTCCTAAAT-CTGTCCCTAAA 390
Query 350 TGGGATAGTCGTCTCAAGTGCAATCTCTACTACTACCGAACAAACTATTTCATCATGATC 409
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TGGGATAGTCGCCTCAAGTGCAATCTCTACTACTACCGAACAAACTATTTCATCATGATC 450
Query 410 GTCGTTATACTTGGATTGGGATTTCTTACAAGGCCTCTCGCTATCTTCTCTGCGCTTTTG 469
||||||||||||||||||||| | |||||||||||| | || |||||| |||||||||||
Sbjct 451 GTCGTTATACTTGGATTGGGAGTCCTTACAAGGCCTTTAGCGATCTTCGCTGCGCTTTTG 510
Query 470 ACAGCATTAAGCGTGGCATTTCTAAATGACAGCTTTGCAGGTTCTTTTAGTGAGAAGGCA 529
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ACAGCATTAAGTTTGGCATTTCTAAATGACAGCTTTGCAGGTTCTTTTAGTGAGAAGGCG 570
Query 530 ACACGAACCACCAGAAGATTCTCTCCACAATTAGCTGCTAAAATGAGACCGCCTTTGACA 589
||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 571 ACACGAACCGTCAGAAGATTCTCTCCACAGTTAGCTGCTAAAATGAGACCTCCTTTGACA 630
Query 590 CCTGTCATTCGTGGACGTCCATCATCAAAGAGAGCAATCCATGTATGTGGTCAACCCCGT 649
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CCTGTCACTCGTGGGCGTCCATCATCAAAGAGAGCAATCCATGTATGTGGTCAACCCCGT 690
Query 650 TGGATCTTTGTCTTGACATGCTCACTTGTGAGTTTTGCTCTTTGGTATATTTCCTGTGGT 709
||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 691 TGGGTTTTTGTCTTGACATGCTCACTTGTGAGTTTTGCTCTTTGGTATATTTCCTCTGGT 750
Query 710 TTGTTCACAGTCTC-GTTGGCGCTACTCATTGGACTTCTTGCTACAGTTCTTCATGCAAG 768
||| ||| |||||| ||| ||||||||||||| || |||||| ||| |||||||||||||
Sbjct 751 TTGCTCAGAGTCTCGGTT-GCGCTACTCATTGCACATCTTGCAACAATTCTTCATGCAAG 809
Query 769 CTTGAGAACACCAAACTTGAAGGCACGTCTTAACACATTTAGGGAGGAATTCCGAGCAGT 828
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 810 CTTGAGAACACCGAACTTGAAGGCACGTTTTAACACATTTAGGGAGGAATTCCGAGCAGT 869
Query 829 GTGGCGTAACTACAGCGAGATTTAGAGTAATTCTTTGGCAGCTTGTACCACCATGATCGT 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 ATGGCGTAACTACAGCGAGATTTAGAGTAATTCTTTGGCAGCTTGTACCACCATGATCGT 929
Query 889 GTTCTGCTGAGGACATAACGCGGTAAAGACCAAACTTACAGCATTTCTCCAAGATAA 945
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 930 GTTCTGCTGAGGACATAACGCTGTAAAGACCAAACTTACTGCCTTTCTCCAAGATAA 986
Score = 89.8 bits (48), Expect = 5e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 116 TTCGACGAAGCTTTTATAATTAGATCACAATCGATCGATTCTATTGAGAATTTGTGT 172
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 139 TTCGACGAAGCTTTGATAATTTGATCTCAATCGATCGATTCTATTGAGAATTTGTGT 195
Score = 89.8 bits (48), Expect = 5e-17
Identities = 55/58 (95%), Gaps = 2/58 (3%)
Strand=Plus/Plus
Query 945 ATGTTCAATCTGGATTTGTTGCTCAATGAATGGGATCATCTGTTTT--CTTTGATTTG 1000
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1015 ATGTTCAATCTGGATTTGTTGCTCAATGACTGGGATCATCTGTTTTTTCTTTGATTTG 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5