BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486983
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02050.1 | Symbols: | Mitochondrial glycoprotein family pro... 1365 0.0
> AT5G02050.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr5:402987-404323 REVERSE LENGTH=1135
Length=1135
Score = 1365 bits (739), Expect = 0.0
Identities = 941/1033 (91%), Gaps = 35/1033 (3%)
Strand=Plus/Plus
Query 22 AACCCTAGAATCCTCAAAAATGGCGTTGAGCACCGTGTTTCGTCGAGCTTCGTCAACAGT 81
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACCCTAGAATCCTCAGAAATGGCGTTGAGCACCGTGTTTCGTCGAGCTTCGTCAACAGT 120
Query 82 GGCCACTCTTGCTTTCCGTGCGGCTAGATCTCCGGCGAGCTTCCGCAGTGGCGCTGTCTC 141
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 121 AGCCAATCTTGCTTTCCGTGCGGGTAGATCTCCGGTTAGCTTCCGCAGTGGCGCTGTCTC 180
Query 142 CGCCGAGAGGCTGATTCTTGGTAG---CCAGATCATGCGTGGATCGGTTAGTTCATTCTC 198
|| |||||||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 181 CGTCGAGAGGCTGATTCGTGGTAGCCACCAGATCAGGCGTGGATCGGTTAGTTCATTCTC 240
Query 199 ATTCTCGAGGTTTTCGACGGAAAGTGCGATCTCTAAAACAACCGCCGATGAGAGTCTTGT 258
| ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 241 AGTCTCGAGCTTTTCGACGGAAAGTGCGATCTCTAAAACAACCGCCGACGAGAATCTTGT 300
Query 259 TAGAGTTATCGAATCTGAAATTGATTGCGCCGTCGAAGAGGAGGCGCCTCATGATACTAG 318
||| ||||||||||||||||| || |||||||||| ||||||||| |||||||| ||| |
Sbjct 301 TAGCGTTATCGAATCTGAAATCGAATGCGCCGTCGCAGAGGAGGCTCCTCATGACACT-G 359
Query 319 -CATCTTGGAAGAGAAGCCAGAAGGGTTTCCTTTTGAGATTATTGATACTCCAGGGGAAA 377
| |||||||||| ||||||||||||||||| ||||| || ||||||| | ||||||| |
Sbjct 360 ACTTCTTGGAAGATAAGCCAGAAGGGTTTCCATTTGAAATCATTGATAATTCAGGGGAGA 419
Query 378 GAACTGTGTTGCTGAGAAGGAAATTTGAGGATGAAACCATCCAAGTGGTAGTTGACTCTG 437
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GAACTGTGTTGCTGACAAGGAAATTTGAGGATGAAACCATCCAAGTGGAAGTTGACTCTG 479
Query 438 TTGCTTC-T-T-ATGAT---GATGAAGAAGATGAAGCAGAACCAAACGATGAAGGAGACG 491
||||||| | | ||||| ||||||||||| ||||||||||||||| |||||| |||||
Sbjct 480 TTGCTTCTTATGATGATGAAGATGAAGAAGAGGAAGCAGAACCAAACAATGAAGAAGACG 539
Query 492 ATGAAGATCAAGAAAGCGT-GGGTAAAATCCGGGTTCCGATGGTTGTGAGTGTGGAGAAA 550
||||||||||||| ||| | ||||||| ||||||||||||||||||| |||||| |||||
Sbjct 540 ATGAAGATCAAGAGAGC-TCGGGTAAAGTCCGGGTTCCGATGGTTGTTAGTGTGCAGAAA 598
Query 551 GGTGATGGTGTCTGTCTTGAGTTTGGAGTCAGCGCATACCCTGATGAGATTGTGATTGAT 610
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 GGTGATGGTGTGTGTCTTGAGTTTGGAGTCAGCGCATACCCGGATGAGATTGTGATTGAT 658
Query 611 AGTTTATCGATCAAACAACCGCAAGAATCTGAGAATGAGCTTGCTTACGAAGGACCTGAC 670
||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct 659 AGTTTATCGATCAAACAACCGCAAGGATCTGATAATGACCTTGCTTACGAAGGACCTGAC 718
Query 671 TTTGATGACTTGGATGAGAATTTGCAGAAGGCTTTCCACAGGTACTTGGAGATCAGAGGC 730
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTGATGACTTGGATGAGAATTTGCAGAAGGCTTTCCACAGGTACTTGGAGATCAGAGGT 778
Query 731 ATTAAACCGAGCTTCACTACCTTTCTGGCAGATTATGTGGCCAACAAAGATAGCAGAGAG 790
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTAAACCAAGCTTCACTACCTTTCTGGCAGATTATGTGGCCAACAAAGATAGCAGAGAG 838
Query 791 TATCTTCAATGGCTCAAGGATCTCAAGTCTTTTGTCGAGAAGTGAATCTGAACTTTGTTC 850
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 TATCTTCAATGGCTCAAGGATCTCAAGTCTTTTGTCGAGAAGTGAAACTGAACTTTGTTC 898
Query 851 AGAAAATAAGAGCGAGATGtttttttttGCTTATAA-CATTGGAGTTTATTTTAGATGAA 909
||| |||||||||||||| || ||||| |||| ||| | || |||||||| |||||||||
Sbjct 899 AGAGAATAAGAGCGAGAT-TTCTTTTT-GCTT-TAAACTTTTGAGTTTATCTTAGATGAA 955
Query 910 CTTGATATCACCATGATTGATCAAGCAATAGTTGAAAAGTGTGGTTATGAGTTGTGCTTG 969
|||||||||||||||| | ||| | ||||||| ||| ||| ||| ||| ||||||
Sbjct 956 CTTGATATCACCATGA--G--CAATC----GTTGAAA-GTGAGGTCATGTGTTATGCTTG 1006
Query 970 TTGACAATATTGCTACATGTTTTTATTG--TT---A----CTTTGCTAGATTTAAGATGC 1020
|| |||||||||||||||||||||| || || | ||||||||||| ||||||||
Sbjct 1007 TTAACAATATTGCTACATGTTTTTAATGGGTTTTTAGGTACTTTGCTAGATATAAGATGC 1066
Query 1021 AACTCTTTCGAGT 1033
|||||||||||||
Sbjct 1067 AACTCTTTCGAGT 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50686254323
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5