BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486984
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02060.1 | Symbols: | Uncharacterised protein family (UPF04... 1153 0.0
> AT5G02060.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr5:404564-405811 FORWARD LENGTH=840
Length=840
Score = 1153 bits (624), Expect = 0.0
Identities = 763/826 (92%), Gaps = 26/826 (3%)
Strand=Plus/Plus
Query 1 GCTTGAAGTTAAGGGAAACATAATTGTTCCT-CTAAAACGCAGAATTAAA-TTGTGGTAG 58
||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||||
Sbjct 1 GCTTGAAGTTAAGGGAAACATAATTGTTCCTCCAAAAAAGCAGAATTAAATTTGTGGTAG 60
Query 59 ATAATTGTTTTTAAAATT-TTATAGCTCAAAAAAGTTGTCTTCTTTTAATGTTTGTTTTT 117
||| |||||||| ||||| |||||||||||||||||||| | |||||||| ||| ||||
Sbjct 61 ATACTTGTTTTT-AAATTCATATAGCTCAAAAAAGTTGTCAT-TTTTAATG-TTGGTTTT 117
Query 118 CTGGTGGCGATGCTCTTAATTACCCAATTCCGTA-G------GAT--T---TAAACTTTT 165
|||||||||||||||||||||||||||||||||| | ||| | | |||||||
Sbjct 118 CTGGTGGCGATGCTCTTAATTACCCAATTCCGTACGATTTATGATCATAAGTCAACTTTT 177
Query 166 GTGTTTTGGGTTTGTGAAA-TTCCCTG-ATTAAATTATGGGTTTAGGGTTTTTATGATCG 223
| | ||||||||||||||| || |||| || ||||||||||||||||||||||||||||
Sbjct 178 GAGATTTGGGTTTGTGAAATTTTCCTGAATAAAATTATGGGTTTAGGGTTTTTATGATCA 237
Query 224 ATTTCATGTAAAGTAGCGATTTTTATT-TCTC-GGGTTTTTGGTAAGGAACAGATATAGA 281
||||| |||||||||||||||||| || || | ||| ||||||| |||||||| |||||
Sbjct 238 ATTTCCTGTAAAGTAGCGATTTTT-TTCTCCCGGGGATTTTGGTGAGGAACAG-GATAGA 295
Query 282 AAGTCTAGGtttttttCT-TCTTCTTGTGTTTGTTTTTCTGTCCTGATCAATGAAGAAGA 340
|||||| |||||| |||| | || |||||||||||||| || |||||||||||||||||
Sbjct 296 AAGTCTTGGTTTTGTTCTGT-TTATTGTGTTTGTTTTTGGGTTCTGATCAATGAAGAAGA 354
Query 341 TGATTGGGAGTCCTGGAACAATGAGTGGGTTGATACTGAGATTAGGGCAATGTGCAACTG 400
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 355 TGATTGGGAGTCCTGGAACAATGAGTGGGTTGATACTGAGACTAGGGCAATGTGCAACTG 414
Query 401 CTGCTGCTTCCATTGGTGTTATGGTTTCTTCTTACGACTTCTCTAATTACACTGCTTTCT 460
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 415 CTGCTGCTTCCATTGGTGTTATGGTTTCTTCTTACGACTTTTCCAATTACACTGCTTTCT 474
Query 461 GCTTCTTAGTCGCATCTATGGGTCTTCAATTGATTTGGAGCTTTGGACTTGCTTGTCTTG 520
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 475 GCTTCTTAGTCGCATCTATGGGTCTTCAATTGATATGGAGCTTTGGACTTGCGTGTCTTG 534
Query 521 ACGTATATGCAATAAGGAGAAAAAGTGATTTACAAAGCCCTATCTTATTGAGCCTTTTCA 580
| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 ATGTATATGCGATAAGGAGAAAAAGTGATTTACGAAGCCCTATCTTATTGAGCCTTTTCA 594
Query 581 CTGTTGGTGATTGGGTCACTGCACTTCTCGCTCTTGCAGCCGCGTGTTCCTCTGCAGGAG 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTGTTGGTGATTGGGTCACTGCACTTCTCGCTCTTGCAGCCGCGTGTTCCTCTGCAGGAG 654
Query 641 TTACGGTTTTATTCACAAAAGACACTGAGTTTTGCAAGCAGCAACCCGCTCTCTCTTGCG 700
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 655 TTACTGTTTTATTCACTAAAGACACTGAGTTTTGCAGGCAGCAACCCGCTCTCTCTTGCG 714
Query 701 ATAGGTTTCAGATTTCTGTCGGTTTATCTTTCTTTAATTGGTTTTTAGCTGCTATATCAT 760
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 715 ATAGGTTTCAGATTTCTGTTGGTTTATCTTTCTTTAATTGGTTTTTAGCTGCTATATCGT 774
Query 761 CTCATACCATGTTTTGGATCTTGATATGATATTAAACAAAACCCAT 806
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 775 CTCATACCATGTTTTGGATCTTGATATGATATCAAACAAAACCCAT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39232868807
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5