BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486984 Length=806 Score E Sequences producing significant alignments: (Bits) Value AT5G02060.1 | Symbols: | Uncharacterised protein family (UPF04... 1153 0.0 > AT5G02060.1 | Symbols: | Uncharacterised protein family (UPF0497) | chr5:404564-405811 FORWARD LENGTH=840 Length=840 Score = 1153 bits (624), Expect = 0.0 Identities = 763/826 (92%), Gaps = 26/826 (3%) Strand=Plus/Plus Query 1 GCTTGAAGTTAAGGGAAACATAATTGTTCCT-CTAAAACGCAGAATTAAA-TTGTGGTAG 58 ||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||| Sbjct 1 GCTTGAAGTTAAGGGAAACATAATTGTTCCTCCAAAAAAGCAGAATTAAATTTGTGGTAG 60 Query 59 ATAATTGTTTTTAAAATT-TTATAGCTCAAAAAAGTTGTCTTCTTTTAATGTTTGTTTTT 117 ||| |||||||| ||||| |||||||||||||||||||| | |||||||| ||| |||| Sbjct 61 ATACTTGTTTTT-AAATTCATATAGCTCAAAAAAGTTGTCAT-TTTTAATG-TTGGTTTT 117 Query 118 CTGGTGGCGATGCTCTTAATTACCCAATTCCGTA-G------GAT--T---TAAACTTTT 165 |||||||||||||||||||||||||||||||||| | ||| | | ||||||| Sbjct 118 CTGGTGGCGATGCTCTTAATTACCCAATTCCGTACGATTTATGATCATAAGTCAACTTTT 177 Query 166 GTGTTTTGGGTTTGTGAAA-TTCCCTG-ATTAAATTATGGGTTTAGGGTTTTTATGATCG 223 | | ||||||||||||||| || |||| || |||||||||||||||||||||||||||| Sbjct 178 GAGATTTGGGTTTGTGAAATTTTCCTGAATAAAATTATGGGTTTAGGGTTTTTATGATCA 237 Query 224 ATTTCATGTAAAGTAGCGATTTTTATT-TCTC-GGGTTTTTGGTAAGGAACAGATATAGA 281 ||||| |||||||||||||||||| || || | ||| ||||||| |||||||| ||||| Sbjct 238 ATTTCCTGTAAAGTAGCGATTTTT-TTCTCCCGGGGATTTTGGTGAGGAACAG-GATAGA 295 Query 282 AAGTCTAGGtttttttCT-TCTTCTTGTGTTTGTTTTTCTGTCCTGATCAATGAAGAAGA 340 |||||| |||||| |||| | || |||||||||||||| || ||||||||||||||||| Sbjct 296 AAGTCTTGGTTTTGTTCTGT-TTATTGTGTTTGTTTTTGGGTTCTGATCAATGAAGAAGA 354 Query 341 TGATTGGGAGTCCTGGAACAATGAGTGGGTTGATACTGAGATTAGGGCAATGTGCAACTG 400 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 355 TGATTGGGAGTCCTGGAACAATGAGTGGGTTGATACTGAGACTAGGGCAATGTGCAACTG 414 Query 401 CTGCTGCTTCCATTGGTGTTATGGTTTCTTCTTACGACTTCTCTAATTACACTGCTTTCT 460 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 415 CTGCTGCTTCCATTGGTGTTATGGTTTCTTCTTACGACTTTTCCAATTACACTGCTTTCT 474 Query 461 GCTTCTTAGTCGCATCTATGGGTCTTCAATTGATTTGGAGCTTTGGACTTGCTTGTCTTG 520 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 475 GCTTCTTAGTCGCATCTATGGGTCTTCAATTGATATGGAGCTTTGGACTTGCGTGTCTTG 534 Query 521 ACGTATATGCAATAAGGAGAAAAAGTGATTTACAAAGCCCTATCTTATTGAGCCTTTTCA 580 | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 535 ATGTATATGCGATAAGGAGAAAAAGTGATTTACGAAGCCCTATCTTATTGAGCCTTTTCA 594 Query 581 CTGTTGGTGATTGGGTCACTGCACTTCTCGCTCTTGCAGCCGCGTGTTCCTCTGCAGGAG 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 CTGTTGGTGATTGGGTCACTGCACTTCTCGCTCTTGCAGCCGCGTGTTCCTCTGCAGGAG 654 Query 641 TTACGGTTTTATTCACAAAAGACACTGAGTTTTGCAAGCAGCAACCCGCTCTCTCTTGCG 700 |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 655 TTACTGTTTTATTCACTAAAGACACTGAGTTTTGCAGGCAGCAACCCGCTCTCTCTTGCG 714 Query 701 ATAGGTTTCAGATTTCTGTCGGTTTATCTTTCTTTAATTGGTTTTTAGCTGCTATATCAT 760 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 715 ATAGGTTTCAGATTTCTGTTGGTTTATCTTTCTTTAATTGGTTTTTAGCTGCTATATCGT 774 Query 761 CTCATACCATGTTTTGGATCTTGATATGATATTAAACAAAACCCAT 806 |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 775 CTCATACCATGTTTTGGATCTTGATATGATATCAAACAAAACCCAT 820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39232868807 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5