BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486985
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02070.1 | Symbols: | Protein kinase family protein | chr5:... 3037 0.0
> AT5G02070.1 | Symbols: | Protein kinase family protein | chr5:405895-408220
REVERSE LENGTH=1974
Length=1974
Score = 3037 bits (1644), Expect = 0.0
Identities = 1865/1975 (94%), Gaps = 2/1975 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACCGATCATACTACACCGTATTGATACCAACTCTCTTGACCGTCTGGCTA 60
||||||||||| |||||||||||| || |||||||||| |||||||||||||| ||||||
Sbjct 1 ATGGAGAAGAAGCGATCATACTACGCCTTATTGATACCTACTCTCTTGACCGTATGGCTA 60
Query 61 GCATGCGCTGGTCATTCTTGTGCCCGCCATGCTAAGGCAAAACCTCCCATGGCCGGACCA 120
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCATGCGCGGGTCATTCTTGTGCCCGACATGCTAAGGCAAAACCTCCCATGGCCGGACCA 120
Query 121 CCAAGGTGTCCTAACTGCGGACCCATGGTTGTACCTTATCCTCTAAGCACGGGTCCAAAC 180
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 121 CCACGGTGTCCTAACTGCGGACCTATGGTTGTACCTTATCCTCTAAGCACGGGTCCAACC 180
Query 181 TGCGGCGATCAAGCTTATAGGATAAATTGTGTTGGTGGTAAGCTTTATTTTGGTGCCCTC 240
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGCGGGGATCAAGCCTATAGGATAAATTGTGTTGGTGGTAAGCTTTATTTCGGTGCCCTC 240
Query 241 CATGGGTCATCTTATGTCATCACGTCCATCAACTCGGTGACCCAACGGATTGTTCTAAGC 300
|||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||| ||
Sbjct 241 CATGGGTCATCTTATGTCATTACGTCCATCAACTCAGTGACCCAGCGGATCGTTCTACGC 300
Query 301 CCGCCCGGTCTTGCTAGCTCTGTATCTTGTATCTCGGCTGATGTCTCTAAACAGGGACTT 360
||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||| ||
Sbjct 301 CCGCCTGGTCTTGCTAGCTCAGTATCCTGTATCTCAGCTGATGTCTCTAAACAGGGCCTC 360
Query 361 GAGCTCGACCCGCATCTCCCTTTCAGCATCACTAGCAGCAACACTATCTTGCTGCTTAAT 420
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 361 GAGCTCGACCCCCATCTCCCTTTCAGCATCACTAGTAGCAACACTATCTTGCTCCTTAAT 420
Query 421 TGCTCTCAGGCTATGCTTCAGGCGCCAATAGATTGTAGTCCTACCAGTTTATGCTACAGC 480
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 421 TGCTCTCAGGCTATGCTGCAGGCGCCAATAGATTGTAGTCCTACCAGCTTATGTTACAGC 480
Query 481 TACATCAAGAACAATGCATCACCTTGTTCTAAGGCTCCCTTGTGTTGCACCTTCAGAACC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TACATCAAGAACAATGCATCACCTTGTTCTAAGGCTCCCTTGTGTTGCACCTTCAGAACC 540
Query 541 GACGGGTCTCAAACCGCTTACACGATCAGGATCAATAGTGGAGGATGCCTCGCATACCAG 600
||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 541 GACGGGTCTCAAACCGCTTACACGATCAGGATCAACGGTGGGGGATGCCTCGCGTACCAA 600
Query 601 AGCTTCGTGGGGCTGAATCCAAACAAAGAGGTTCCTCCTCCCGGGATAAAATGGCCTGAC 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 AGCTTCGTGGGGCTGAATCCAAACAAAGAGGTTCCTCCTCCCGGGAAAAAATGGCCTGAC 660
Query 661 ACAGGGCTAGAGTTGCAATGGGCATTGCCTAAAGAACCAGTTTGCAAAACTGATGTAGAT 720
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACGGGGCTCGAGTTGCAATGGGCATTGCCTAAAGAACCAGTTTGCAAAACTGATGTAGAT 720
Query 721 TGTAACCTCTTGTTGGGTAAATCAAAATGCTTGCCTGACCCGACGAGTCTCGGCCTAAAA 780
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 721 TGTAACCTCTTGTTGGGTAAATCAAAATGCTTGCCTGATCCAACGAGTCTCGGCCTGAAA 780
Query 781 CGATGCTCCTGCAAAAGAGGTTTGGAATGGGATCCGGTTAACGCAATATGTGGTAAATGT 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGATGCTCCTGCAAAAAAGGTTTGGAATGGGATCCGGTTAACGCAATATGTGGTAAATGT 840
Query 841 CGCCATGGGAAACACTGCAAAAAGAAGAAGAAGACCGTTGTCTTCGCAGGTGTGGCTGTT 900
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 841 CGCCATGGGAAACACTGCAAAAAGAAGAAGAAGACCGTTGTTTTCGCAGGTGCGGCTGTT 900
Query 901 GCGGTTGTGGGAGCTACACTAGCGATTGCGGTAGCGGTTATTGCAACCAAACATAGCCAC 960
||||||||||||| ||| ||||||||||||||||| || |||| ||||||||||||||||
Sbjct 901 GCGGTTGTGGGAGTTACGCTAGCGATTGCGGTAGCAGTAATTGGAACCAAACATAGCCAC 960
Query 961 CAAAAGGTTAAAAAGGATCTCCATAAGAACATCGTCAAGGAGCGAGAAGAGATGCTTAGC 1020
|||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||
Sbjct 961 CAAAAGGTTAAAAAGGATATCCACAAGAACATTGTTAAGGAGCGAGAAGAGATGCTTAGC 1020
Query 1021 GCAAATTCCACGGGAAAGTCATCAAGAATCTTCACCGGCAGAGAAATCACGAAAGCAACC 1080
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 GCAAATTCCACTGGAAAATCATCAAGAATCTTCACTGGCAGAGAAATCACGAAAGCAACC 1080
Query 1081 AACAATTTCTCAAAAGACAATCTCATAGGCACCGGAGGTTTCGGAGAAGTGTTTAAAGCG 1140
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1081 AACAATTTCTCAAAAGACAATCTCATAGGCACTGGAGGTTTTGGAGAAGTGTTTAAAGCT 1140
Query 1141 GTTCTTGAGGACGGAACCATAACGGCGATCAAACGAGCCAAGCTTAACAACACCAAAGGC 1200
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1141 GTTCTTGAGGATGGAACCATAACCGCGATCAAACGAGCAAAGCTTAACAACACCAAAGGC 1200
Query 1201 ACTGATCAGATCCTAAACGAAGTCCGGATTCTTTGCCAAGTCAATCATAGAAGCTTAGTT 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 ACTGATCAGATCCTAAACGAAGTCCGGATTCTCTGCCAAGTCAATCATAGAAGCTTAGTT 1260
Query 1261 AGGCTTCTCGGTTGCTGCGTCGATCTTGAATTGCCTCTCTTGATCTACGAGTTTATTCCC 1320
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGGCTTCTCGGTTGCTGTGTTGATCTTGAATTGCCTCTCTTGATCTACGAGTTTATTCCC 1320
Query 1321 AACGGAACACTATTCGAACATCTCCATGGCAATCCAGATCACACTTGGAAACCGCTGACT 1380
|||||||| || ||||||||||||||||||| | |||| | ||||||||||||||||||
Sbjct 1321 AACGGAACGCTGTTCGAACATCTCCATGGCAGTTCAGACCGTACTTGGAAACCGCTGACT 1380
Query 1381 TGGCGGCGCAGACTGCAGATCGCATACCAAACCGCTGAAGGATTAGCTTATCTCCATTCC 1440
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1381 TGGCGGCGCAGACTGCAGATTGCATACCAAACCGCTGAAGGATTAGCTTATCTCCACTCC 1440
Query 1441 GCAGCACAGCCGCCGATTTATCACCGCGATGTAAAATCGAGCAATATTTTGCTTGATGAT 1500
||||||||||| || ||||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct 1441 GCAGCACAGCCACCCATTTACCACCGCGACGTAAAGTCAAGCAATATTTTGCTTGACGAG 1500
Query 1501 AAGCTTAACGCCAAAGTATCAGACTTTGGGCTTTCAAGGCTTGTGGATTTGACGGAAACT 1560
||||| |||||||| || |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1501 AAGCTAAACGCCAAGGTTTCAGACTTTGGGCTGTCAAGACTTGTGGATTTGACAGAAACC 1560
Query 1561 GCTAATAACGAGAGCCATATCTTCACTGGTGCACAAGGTACATTGGGGTACCTTGATCCA 1620
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 1561 GCTAATAACGAGAGCCATATCTTCACGGGTGCGCAAGGTACATTGGGATACCTCGATCCA 1620
Query 1621 GAATACTACCGGAACTTCCAGCTAACTGATAAAAGCGATGTGTACAGCTTTGGGGTTGTG 1680
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1621 GAATACTACCGGAATTTCCAGCTAACTGATAAGAGCGATGTGTACAGCTTCGGGGTTGTG 1680
Query 1681 CTTCTGGAGATGGTTACATCGAAAAAGGCGATAGATTTCAGTAGAGAAGAGGAAGATGTG 1740
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1681 CTTCTGGAGATGGTTACATCGAAGAAGGCGATAGATTTCACTAGAGAAGAGGAAGATGTG 1740
Query 1741 AACCTGGTGATGTACATTAACAAGATGATGGATCAAGAGAGATTGAATGAATGCATCGAT 1800
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1741 AACCTGGTGATGTATATTAACAAGATGATGGATCAAGAGAGATTGACTGAATGCATCGAT 1800
Query 1801 CCACTTCTGAAGAAGACGGCTAACAA-ACTTGACCTGCAGACGATGCAGCAGCTCGGGAA 1859
||||| ||||||||||| |||||||| | ||||| |||||||||| ||||||||||||||
Sbjct 1801 CCACTGCTGAAGAAGACAGCTAACAAGA-TTGACATGCAGACGATACAGCAGCTCGGGAA 1859
Query 1860 TTTAGCATCTGCGTGCCTTAACGAGCGGAGACAAAACCGGCCTTCGATGAAAGAGGTAGC 1919
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1860 TTTAGCATCTGCGTGCCTTAACGAACGGAGACAAAACCGACCTTCGATGAAAGAGGTTGC 1919
Query 1920 TGATGAGATCGAATACATCATCAATATTCTGTCACAAGAGGTTACTGAGACATAG 1974
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TGATGAGATTGAATACATCATCAATATTCTGTCACAAGAGGTTACTGAGACATAG 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97790661660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5