BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486989
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02130.1 | Symbols: NDP1 | Tetratricopeptide repeat (TPR)-li... 2124 0.0
> AT5G02130.1 | Symbols: NDP1 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:419658-422032 REVERSE LENGTH=1426
Length=1426
Score = 2124 bits (1150), Expect = 0.0
Identities = 1259/1312 (96%), Gaps = 6/1312 (0%)
Strand=Plus/Plus
Query 1 TCTGAACAAGACAAGAAAAAAG-AGTAAATTGAGCGATTATGATTCGCGCGGCTACCAAA 59
||||| |||||||||||||||| || | |||||||||||||||||||||| ||| |||||
Sbjct 37 TCTGAGCAAGACAAGAAAAAAGAAG-ATATTGAGCGATTATGATTCGCGCAGCTGCCAAA 95
Query 60 GTT-TCAAGAGCAGCAGCGGCAACGATTCGTGGCCGCACGATCTCCGTTAGAGGAAACCT 118
|| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 -TTCTCCAGAGAAGCAGCGGCAACGATTCGTGGCCGCACGATCTCCGTTAGAGGAAACCT 154
Query 119 TATTAGATACTCGACGCCACTGAGATTGATTCACGGTGAAATCAGTGTTCCAAACGCGAA 178
|||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 155 TATTCGATACTCGACGCCATTGAGATTGATTCACGGTGAAATCAGCGTTCCAAACGCGAA 214
Query 179 TCATGTTGCTATTCAGATGGTTAATTACGCTCTTTCTCACGCTAGGTCACAAAAATCAGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 TCATGTTGCTATTCAGATGGTTAATTACGCTCTTTCTCACGCTAGGTCACAAAAATCAGA 274
Query 239 TGAATCTTATGCTCAAGGGATGCTAGTGCTTGAACAGTGTCTTGAGAATCAACCTAACGA 298
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 275 TGAATCTTATGCTCAAGGGATGCTAGTGCTTGAGCAGTGTCTTGGGAATCAACCTAACGA 334
Query 299 TGATCAGGTTTCTCATGATTCTAAAGCAACAGTCTTGCTTGCCATGTCTGATCTTTTATA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TGATCAGGTTTCTCATGATTCTAAAGCAACAGTCTTGCTTGCCATGTCTGATCTTTTATA 394
Query 359 CGAAAGTGGGAACAGTAGTGAAGCCATTGAACGCCTTAAGCAAGTCATGACTCTGACACT 418
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 395 CGAAAGTGGGAATAGTAGTGAGGCCATTGAACGCCTTAAGCAAGTCATGACTCTGACACA 454
Query 419 CTCATCGTTGGCTATAAGAGTTGTTGCTGTGGAAGCTCTTGTTGGTCTGCTGATTCAGTC 478
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 455 CTCATCGTTGGCTATTAGAGTTGTTGCTGTGGAAGCCCTTGTTGGTCTGCTGATTCAGTC 514
Query 479 AGGACAGGATGATGCTTCATTGGATGTTGCTGGCGAATTCCTGGAATTGGTAAAAGAGAG 538
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 515 AGGACAGGATGATGCTTCATTGGATGTTGCTGACGAATTTCTGAAATTGGTAAAAGAGAG 574
Query 539 CGGCCATGAGAATCTTCAGGATGTGGTTGCTACAGCTAAAGCAATCAAAGGCCTAGCTGA 598
||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||
Sbjct 575 TGGCCATGAGAATCTTCAGGGTGTGGTTGCTACAGTTAAAGCGATCAAAGGCCTTGCTGA 634
Query 599 GCTTGTGAAAGGAAATATTGAATCTGCCGAATCTTTATTTCGAGGACTTGAGAATCATGA 658
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 635 GCTTGTGAAAGGAAATATCGAATCCGCCGAATCTTTATTTCGAGGACTTGAGAATCATGA 694
Query 659 AAGCTGCAAAGGTAACATTGCACTTTCTTATGGTGAATTCTTGCACGCCACTGGAAATTT 718
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 695 AAGCTGCAAAGGTAACATTGCACTTTCTTATGGTGAATACTTGCACGCCACTGGAAATTT 754
Query 719 TGAACTGGCAAAGGAGATGTATCATAAGGCAATTCAAGGAGTGACAGAGACCAAAGAATC 778
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 755 TGAACTGGCAAAGGAGATGTATCAGAAGGCAATTCAAGGAGTGACAGAGACCAAAGAATC 814
Query 779 TATGTGTTCATGTAACATGAATTTGAAGGCAGTCTCGCTGGCAGCCACATTTGCTCTGGG 838
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 815 TATGTGTTCATGTAACATGAACTTGAAGGCAGTCTCACTGGCTGCCACATTTGCTCTGGG 874
Query 839 TCAGCTCGAGTCACACATTGGAAACTTTGGTGTTGCGGAGAAGACACTGACAGACGCATT 898
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 875 TCAGCTCGAGTCACACATTGGAAACTTTGGTGTTGCGGAGAAGACACTGACCGACGCATT 934
Query 899 GACAAACG-CTGAGGAACATTATGGAAACAATCATCCTAAGGTTGGTGTGATCTTAACCG 957
|||||| | ||||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct 935 GACAAA-GACTGAGGAACATTACGGAGACAATCATCCTAAGGTTGGTGTGATTTTAACCG 993
Query 958 CTGTGGCTCTGATGTATGGAAACAAAGCAAAGCAAGAACGCTCAAGTTCTATCCTGATTC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 994 CTGTGGCTCTGATGTATGGAAACAAAGCAAAGCAAGAACGCTCAAGTTCTATCTTGATTC 1053
Query 1018 AGGAGGGCCTCTTCAGAAAAGCATTGGAGCTCATGAAAGCACCTCCACTGGATTCAGAAG 1077
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1054 AAGAGGGCCTCTACAGAAAAGCATTGGAGCTCATGAAAGCACCTCCACTGGATTCAAAAG 1113
Query 1078 GGATAATAAACATGGAAAATCAAGGAGTAATGGCTTTAGCAAGAGCCGGGTATGCGGAGT 1137
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1114 GGATAATAAACATGGAAAATCAAGAAGTAATAGCTTTAGCAAGAGCCGGGTATGCGGAGT 1173
Query 1138 TACTACTGATTCAAGAGAACAGAAAAAGCGAAGGAGAGAAAATGAAATCATGGGCCGAAT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 TACTACTGATTCAAGAGAACAGAAAAAGCGAAGGAGAGAAAATGAAATCATGGGCCGAAT 1233
Query 1198 CTGCGTGGAGAAACAAACGCATCTCTCTTTCAGAAGCATTGACTCTCTCAGAGCCATTAG 1257
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1234 CAGCGTGGAGAAACAAACGCATTTCTCTATCAGAAGCATTGACTCTCTCAGAGCCGTTAG 1293
Query 1258 GTAAAGTAGCAATCATAGATGCTCGCACCACTCGAGTCCTCTAAAAGAATCT 1309
|||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1294 GTAAAGTAGCAATCATAGATGCTCGCACCACTCGTGTACTCTAAAAGAATCT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5