BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486992
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02150.1 | Symbols: Fes1C | Fes1C | chr5:424291-426079 REVER... 1482 0.0
AT3G09350.1 | Symbols: Fes1A | Fes1A | chr3:2871045-2873312 FOR... 725 0.0
> AT5G02150.1 | Symbols: Fes1C | Fes1C | chr5:424291-426079 REVERSE
LENGTH=1176
Length=1176
Score = 1482 bits (802), Expect = 0.0
Identities = 934/995 (94%), Gaps = 20/995 (2%)
Strand=Plus/Plus
Query 1 CCGTTGCTTCAATGGCGAAAGACGGACCTAACTGGGACGGTCTGCTTAAATGGAGCCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1 CCGTTGCTTCAATGGCGAAAGACGGACCTAACTGGGACGGTCTGCTTAAGTGGAGTCTCT 60
Query 61 CTCACTCCGATGGTACTCGACCTACTCGCCATTTAAGTGAGGAAGATCGAAAATGGTTTG 120
|||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 61 CTCACTCCGATGGTACTCGACCTACTTGCCAATTAAGTGAGGAGGATCGAAAATGGTTTG 120
Query 121 CAGAGGCTATGCAGTCGCAAACAGTAGATATAGTCAAGCGGTTGAAGGAGATAACACAAG 180
|||| |||||||| || ||||| |||||| |||||||||||||||||||||| ||||| |
Sbjct 121 CAGAAGCTATGCAATCACAAACGGTAGATGTAGTCAAGCGGTTGAAGGAGATTACACAGG 180
Query 181 TATTGCAGACACCTCAACAAGTTTTGGAGGCTCACCAAGTAACCCCTAAAGATATTGAAG 240
|||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 181 TATTGCAGACACCTCAACAAGTTTTGGAGGCTCATGAAGTGACCCCTCAAGATATTGAAG 240
Query 241 GTTTGCTGGATGAGTTGCAGGAACATGTTGAATCAATTGACATGGCTAATGATCTTCATT 300
||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 241 GTTTGTTGGATGAGTTGCAGGAACATGTTGAATCGATTGATATGGCTAATGATCTTCATT 300
Query 301 CCGTTGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTCCAATGCTAATATTCGGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 CCGTTGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTCCAATGCTAATATCCGGG 360
Query 361 CTAAGTCTGCAGATGTCATAAGCACAATAGTTGAGAACAACCCTCGGAGTCAAGAATCAG 420
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 CTAAGTCTGCAGATGTTGTAAGCACAATAGTTGAGAACAATCCTCGGAGTCAAGAATCAG 420
Query 421 TTATGGAAGCCAATGGTTTAGAGTCATTGCTTTCGAA-CTTTACTTCAGACACCGATTTG 479
||||||||||||||||||||||||| ||||||| || |||||||||||||||||| ||
Sbjct 421 TTATGGAAGCCAATGGTTTAGAGTCCTTGCTTT-TAAGGTTTACTTCAGACACCGATATG 479
Query 480 CATTCTCGAACACAGGCGCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCCGGG 539
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 CATTCTCGAACACAGGCTCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCTGGG 539
Query 540 ATCACAGGTTTCCAGATTGCAAATGGTTACTCTGGTTTAAAAGATGCTTTGGAAGCTGAT 599
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 ATCACAGGTTTCCGGATTGCAAATGGTTACTCTGGTTTAAAAGATGCTTTGGAAACTGAT 599
Query 600 AGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGCTGCATTATCTTCTACAAGAGAATGAC 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGTTGCATTATCTTCTACAAGAGAATGAC 659
Query 660 TCAGACTCCGATATTGCTATAGAACTCGGGCTTCACCATTTGATGATGCACCTCGTGTCT 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 TCAGACTCCGATATTGCTATAGAATTCGGGCTTCACCATTTGATGATGCACCTCGTGTCT 719
Query 720 AGCTTCGATGCTGATGTAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTCGTGAAAGCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCTTCGATGCTGATGTAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTCGTGAAAGCT 779
Query 780 AGAAAAGACTGTAGTACTTGTGGTTCTAGCATAGTGAAAGGCGATGAGAGACTGAGACAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 AGAAAAGACTGTAGTACTTGTGGTTCTAGCATAGTGAAAGGCGATGAGAGACTCAGACAG 839
Query 840 ATGCTAAAAGATCGGATCAAAGCAATCAGC----T--------TG---TT-T--ATGTCA 881
|| ||||||||||||||||||||||||||| | || || | ||||||
Sbjct 840 ATTCTAAAAGATCGGATCAAAGCAATCAGCCGGGTCAAAGCAATGAGCTTGTTTATGTCA 899
Query 882 CAAGAAGATCTCTCAGCTGCTAAAGAGGAGAGACAGCTCTTAGATTCACTATGGACCACA 941
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 900 CAAGAAGATCTATCAGCCGCTAAAGAGGAGAGGCAGCTCTTAGATTCACTATGGACCACA 959
Query 942 TTCTACAACGAACCTTCTTCTCTTTAGAGAGAAAG 976
||| ||||||||||||||||||||||||| ||||
Sbjct 960 ATCTTCAACGAACCTTCTTCTCTTTAGAGACAAAG 994
> AT3G09350.1 | Symbols: Fes1A | Fes1A | chr3:2871045-2873312 FORWARD
LENGTH=1466
Length=1466
Score = 725 bits (392), Expect = 0.0
Identities = 813/1009 (81%), Gaps = 57/1009 (6%)
Strand=Plus/Plus
Query 7 CTTCAATGGCGAAAGACGGACCTAACTGGGACGGTCTGCTTAAATGGAGCCTCTCTCACT 66
||||||||||||||||||||||||| ||||| ||| ||||||| ||||| |||||||||
Sbjct 167 CTTCAATGGCGAAAGACGGACCTAATTGGGATGGTTTGCTTAAGTGGAGTCTCTCTCACG 226
Query 67 CCGATGGTACTCGACCTACTCGCCATTTAAGTGAGGAAGATCGAAAATGGTTTGCAGAGG 126
|||| ||||||||||| |||||||| || |||||||| ||||||||||||||| ||||
Sbjct 227 CCGACGGTACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGGAGG 286
Query 127 CTATGCAGTCGCAAACAGTAGATATAGTCAAGCGGTTGAAGGAGATAACACAAG-TATTG 185
||||||| ||||| || |||||| ||||||| || |||||||||| |||| || || ||
Sbjct 287 CTATGCAATCGCAGACTGTAGATGTAGTCAAACGCATGAAGGAGATTACACTAGTTA-TG 345
Query 186 CAGACACCTCAACAAGTTTTGGAGGCTCACCAAGTAACCCCTAAAGATATTGAAGGTTTG 245
|| |||||| |||||||||||| || || |||||| ||| ||||||| ||| ||||
Sbjct 346 CAAACACCTGAACAAGTTTTGGTGGAACATGGAGTAACACCTGAAGATATCCAAGATTTG 405
Query 246 CTGGATGAGTTGCAGGAACATGTTGAATCAATTGACATGGCTAATGATCTTCATTCCGTT 305
||||||||| |||| || || |||||||| || || |||||||| ||||||||||| ||
Sbjct 406 CTGGATGAGCTGCAAGAGCACGTTGAATCGATCGATATGGCTAACGATCTTCATTCAATT 465
Query 306 GGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTC-CAATGCTAATATTCGGGC-TA 363
||||||||||| ||||||||| | | ||| |||||||| | |||||||||||||||| |
Sbjct 466 GGAGGCTTGGTTCCTCTTCTTAGTTTCCTTAAAAACTCTC-ATGCTAATATTCGGGCAAA 524
Query 364 AGTCTGCAGATGTCATAAGCACAATAGTTGAGAACAACCCTCGGAGTCAAGAATC-AGTT 422
|| |||| |||||| | |||||||||||| ||||||| ||| | ||||| ||| | |||
Sbjct 525 AG-CTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCCTAGAAGTCAGGAA-CTTGTT 582
Query 423 ATGGAAGCCAATGGTTTAGAGTCATTGCTTTCGAACTTT-ACTTCAGACACCGAT-TTGC 480
|||||| |||||| | | ||||||||||| ||||| ||| ||||||||||| ||| || |
Sbjct 583 ATGGAAACCAATGCTCTGGAGTCATTGCTCTCGAA-TTTCACTTCAGACACTGATATT-C 640
Query 481 ATTCTCGAACACAGGCGCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCCGGGA 540
| ||||||| ||||| || || ||||||||||||||||||||| |||| ||| || |||
Sbjct 641 ACGCTCGAACCCAGGCTCTTGGCGCAATATCATCTTTGATTCGCCATAACAAA-CCAGGA 699
Query 541 -TCACAGG-TTTCCAGATTGCAAATGGTTACT-CTGGTTTAAAAGATGCTTTGGAAGCTG 597
| || || |||| || |||| |||||||| | |||| ||| ||| || |||| | |||
Sbjct 700 GTAAC-GGCTTTCAAGCTTGCCAATGGTTA-TGCTGGCCTAAGAGACGCCTTGGCATCTG 757
Query 598 ATAGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGCTGCATTATCTTCTACAAGAGAATG 657
||||||||||||||||||||||||| ||||||||| |||| ||||| || |||||| |||
Sbjct 758 ATAGTGTGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATG 817
Query 658 ACTCAGACTC-C-GATATTGCTA-TAGAACTCGGGCTTCACC--ATTTGATGATGCACCT 712
| |||||| | | | |||||| | | || || || ||| || | | ||||||||| ||
Sbjct 818 ATTCAGAC-CGCAG-TATTGCCACTGGA-CTTGGA-TTCCCCCGAGT-GATGATGCATCT 872
Query 713 CGTGTCTAGCTT-CGATGCTGATG-TAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTC 770
| ||||| | ||||||||| | | |||||||| |||||||| ||||| ||||||||
Sbjct 873 TGCCTCTAG-TGACGATGCTGA-GATCAGAGAAGCCGCTCTTCGTGGATTACTTGAGCTT 930
Query 771 GTGAA-AGCTAGAAAAGACTG-TAGTACTTGTGGTTCTAGCATAG-TGAAAGGCGATGAG 827
| || || |||||| || | | | | || | | ||||||| | |||| |||||||
Sbjct 931 -TCAAGAG--AGAAAA-AC-GATGGAA---GTAG--C-AGCATAGATAAAAG-CGATGAG 978
Query 828 AGACTGAGACAGATGCTAAAAGATCGGATCAAAGCAATCAGCTTGTTTATGTCACAAGAA 887
| |||||| ||| | ||| |||| |||||||||| ||||| |||| |||||||||||
Sbjct 979 AAACTGAGGCAGCTACTAGAAGAACGGATCAAAGGAATCACCTTG---ATGTCACAAGAG 1035
Query 888 GATCTCTCAG-CTGCTAAAGAGGAGAGACAGCTCTTAGATTCACTATGGACCACATT-CT 945
||||| | | | | |||||| |||||||||||| | |||| ||| |||| || || ||
Sbjct 1036 GATCT-TGAAACGGTTAAAGAAGAGAGACAGCTCGTGGATTTACTGTGGAGCAT-TTGCT 1093
Query 946 ACAACGAACCTTCTTCTCTTTAGAGAGAAAGG-CTTCTCTGTTCTTCCC 993
|||| |||||||||||||| ||||| ||||| ||| || |||||||||
Sbjct 1094 ACAATGAACCTTCTTCTCTG-AGAGAAAAAGGACTTGTC-GTTCTTCCC 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5