BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486994 Length=1788 Score E Sequences producing significant alignments: (Bits) Value AT5G02170.1 | Symbols: | Transmembrane amino acid transporter ... 2532 0.0 > AT5G02170.1 | Symbols: | Transmembrane amino acid transporter family protein | chr5:427833-430695 FORWARD LENGTH=1830 Length=1830 Score = 2532 bits (1371), Expect = 0.0 Identities = 1677/1819 (92%), Gaps = 43/1819 (2%) Strand=Plus/Plus Query 1 TAGATGAAGCAACACGAGACAGTCGATGAAGAAAGGGAAGATTTGTAT--CACG--CAGA 56 |||||||||||| |||||||| ||||| |||||||||||||||||||| |||| | || Sbjct 24 TAGATGAAGCAAAACGAGACATTCGATCAAGAAAGGGAAGATTTGTATCACACGTTC-GA 82 Query 57 TGAGGAAGACGAAGAAAGTCAAACCGAGAGCTCCGTTCCGTCAACTCCTTTATCTCGTAA 116 ||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 83 TGAGGAAGATGAAGAAAGCCAAACAGAGAGCTCCGTTCCCTCAACTCCTTTATCTCGTAA 142 Query 117 TGGATCCGATA-ACGTTCCCGTTCCGTGGCCTCGAAGTTATCGACAGTCTATGGATTTGT 175 ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 143 CAGATCCGA-AGACGTTCCCGTTCCGTGGCCTCGAAGTTATCGACAATCTATGGATTTGT 201 Query 176 TGACCGGAGTTACACCTCC-AATCAGTACAAGTTTTGTCTCTTCGTTTCGCCAGAGACGA 234 |||| |||||||||||||| | | |||||||||||||||||||| ||||||||||||||| Sbjct 202 TGACTGGAGTTACACCTCCGACT-AGTACAAGTTTTGTCTCTTCATTTCGCCAGAGACGA 260 Query 235 CAAATCTCTATTTTCGGTTCATTTACTTCTTCCCCAAGCAAACAGCAACTTCTCATCGAC 294 |||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 261 CAAAGCTCTGTTTTCGGTTCGTTTACTTCTTCACCAAGCAAACAGCAACTTCTCATAGAC 320 Query 295 AAAGATGAGATCCATAA-CTCTGTTATGTCATCCATCAATTCATTTCTTGCTTCTCATCT 353 ||||| |||||||| || ||||||| |||| |||||||| |||||||||||||||||||| Sbjct 321 AAAGACGAGATCCA-AAGCTCTGTTGTGTCCTCCATCAAATCATTTCTTGCTTCTCATCT 379 Query 354 CCAGCTATCAGTCCCGGGGGATCTTTTAACTCCCCAAGAAAACCGCAGTTGCACATTCTC 413 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 CCAGCTATCAGTCCCAGGGGATCTTTTAACTCCCCAAGAAAACCGCAGTTGCACATTCTC 439 Query 414 TCAATCCGTTCTCAACGGAATCAATGTTCTATGTGGAGTAGCTTTACTTACAATGCCTTA 473 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 440 TCAATCCGTTCTCAACGGAATTAACGTTCTATGTGGAGTAGCTTTACTTACAATGCCTTA 499 Query 474 CGCA-TTGAAAGAAGGAGGATGGTTAGGGCTTTTCATACTCTTCTCGTTTGGCATTATCA 532 |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 500 CGCAGTT-AAAGAAGGAGGATGGTTAGGGCTTTTCATACTCTTCTCCTTTGGCATTATCA 558 Query 533 CTTTCTACACAGGCATTCTCCTCAAGAGATGTCTCGAGAATTCACCTGGAATCCACACTT 592 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 559 CTTTCTACACCGGCATTCTCCTCAAGAGATGTCTCGAGAACTCCCCTGGAATCCACACTT 618 Query 593 ATCCGGACATCGGTCAAGCTGCATTCGGTACTACTGGACGCATCCTCGTCTCTATACTGC 652 | |||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 619 ACCCGGACATCGGTCAAGCTGCATTCGGAACCACTGGACGCATCCTCGTCTCTATACTTC 678 Query 653 TCTACGTGGAGTTATACGCATCTTGTGTGGAATACATAATTATGATGAGTGATAATTTGT 712 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 679 TCTACGTAGAGTTATACGCATCTTGTGTGGAATACATAATCATGATGAGTGATAATTTGT 738 Query 713 CAAGGATGTTCCCAAATACCTCTTTATACATCAACGGATGTTCTTTAGATTCTAATCAAG 772 |||| ||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| Sbjct 739 CAAGAATGTTCCCAAATACCTCCTTATACATCAACGGATTTTCTTTAGATTCTACTCAAG 798 Query 773 TTTTCGCCATTACCACGACTTTTATTGTTCTTCCTACTGTCTGGCTCAAAGACCTCAGCT 832 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 799 TTTTCGCCATTACCACGACTCTTATTGTTCTTCCTACTGTCTGGCTCAAAGACCTCAGCT 858 Query 833 TGTTGTCCTATCTCTCAGCCGGAGGTGTCTTCTCCTCAATTTTGCTTGCGCTTTCCCTCT 892 | ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| Sbjct 859 TATTGTCCTATCTCTCAGCCGGAGGTGTCATCTCCTCAATCTTGCTTGCGCTTTGCCTCT 918 Query 893 TTTGGGCTGGATCAGTCGACGGGGTTGGATTTCACATAAGCGGACAAGCTCTCGATATAA 952 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 919 TTTGGGCTGGATCAGTAGACGGGGTTGGATTTCACATAAGCGGACAAGCTCTTGATATAA 978 Query 953 CTAACATACCTGTCGCCATTGGAATTTACGGGTTCGGTTTCGGGAGTCACTCTGTTTTCC 1012 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 979 CTAACATACCTGTCGCAATCGGAATTTACGGGTTCGGTTTCGGGAGTCACTCTGTTTTCC 1038 Query 1013 CCAACATTTACTCATCCATGAAAGAACCTTCCAAGTTTCCTATGGTGCTTCTCATCAGTT 1072 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1039 CCAACATTTACTCATCCATGAAAGAACCTTCCAAGTTTCCTACGGTGCTTCTCATCAGTT 1098 Query 1073 TTGCGTTTTGCACTCTATTCTACATCGCCGTAGCGGTTTGTGGATACACGATGTTTGGTG 1132 ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||||||| Sbjct 1099 TTGCGTTTTGCACTCTATTTTACATTGCGGTAGCGGTTTGTGGATTCACGATGTTTGGTG 1158 Query 1133 AAGCGATTCAATCCCAATTTACACTGAACATGCCTCAACATTTCACATCGTCTAAAATCG 1192 | |||||||||||||||||||||||||||||||| | ||||||||| || |||||||||| Sbjct 1159 ATGCGATTCAATCCCAATTTACACTGAACATGCCACCACATTTCACCTCATCTAAAATCG 1218 Query 1193 CAGTCTGGACAGCGGTCGTTACACCAATGACGAAATATGCTCTGACGATTACTCCAGTGA 1252 ||||||||||||||||||| ||||||||||||||||| ||| | ||||| |||||||| | Sbjct 1219 CAGTCTGGACAGCGGTCGTAACACCAATGACGAAATACGCTTTAACGATCACTCCAGTAA 1278 Query 1253 TGCTAAGCCTAGAAGAACTCATACCGTCTTCGTCAAGAAAGATGAGATCCAAAGGTGTCT 1312 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1279 TGCTAAGCCTAGAAGAACTCATACCGTCTTCATCAAGAAAGATGAGATCCAAAGGTGTCT 1338 Query 1313 CTATGCTTTTTAGAACCATCTTAGTTCTCTCCACTTTGGTCGTTGCACTCACAGTTCCAT 1372 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1339 CTATGCTCTTTAGAACCATATTAGTTCTCTCCACTTTGGTCGTTGCACTCACAGTTCCAT 1398 Query 1373 TCTTCGCTACCGTTGCGGCTCTGATTGGATCTTTTATCGCAATGCTTATCGCGTTAATAT 1432 |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1399 TCTTCGCTACTGTGGCGGCTCTGATTGGATCTTTCATCGCAATGCTTATCGCGTTAATAT 1458 Query 1433 TCCCGTGTCTCTGTTACCTCAGCATTATGAAGGGTAGATTAACTAACTTTCAAATCGGAA 1492 |||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 1459 TCCCGTGTCTCTGTTATATCAGCATTATGAAGGGTAGATTAACTAACTTTCAGATTGGAA 1518 Query 1493 TTTGTATTTTAATCGTGATCATAGGCGTTGTGAGCGGTTGTTGCGGGACTTACTCTGCAA 1552 ||||||||||||||||||| || ||| |||| |||||||||||||||||||| ||||| | Sbjct 1519 TTTGTATTTTAATCGTGATAATCGGCATTGTAAGCGGTTGTTGCGGGACTTATTCTGCTA 1578 Query 1553 TCGCCAGATTAATCGGCGAGATGACCTAACTGGTTTTGCAGAATAAGTA--TAT-T-CGA 1608 ||||||||||||||||||| ||||||| | ||||||||||||||||||| ||| | ||| Sbjct 1579 TCGCCAGATTAATCGGCGAAATGACCTGATTGGTTTTGCAGAATAAGTACGTATATTCGA 1638 Query 1609 AGGAATAAACCGGATGGTATACCTTGAATAAAACCGGTTTTTGATAAACCATTAtttttt 1668 ||||||||||||| | ||||| |||||||||||||||||||||||||||| | ||||| Sbjct 1639 AGGAATAAACCGG-TA-TATAC-TTGAATAAAACCGGTTTTTGATAAACCAATGGTTTTT 1695 Query 1669 t-tgtgt-ga-a-t----ttt--ttttGGTATTT---ATTCATAAACCCTAGTTTTA-GT 1714 | |||| || | | ||| |||| | ||| ||| || | |||||||| || Sbjct 1696 TGTGTGAAGATAATCCAATTTGATTTTTTTTTTTGGTATTT-TATTCA-TAGTTTTAAGT 1753 Query 1715 CCATTTTACTCAATTTTAGTCTTCAttttttttCG-C-TT-GCTCATT-AAAAACTAA-T 1769 |||||||||||||| | |||||||||||||||| | || ||||||| ||||| ||| | Sbjct 1754 CCATTTTACTCAATGT-AGTCTTCATTTTTTTTTTTCATTTGCTCATTTAAAAA-TAAAT 1811 Query 1770 AAATAAGAGAATATTTTGG 1788 |||||| |||||||||||| Sbjct 1812 AAATAACAGAATATTTTGG 1830 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88453360290 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5