BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486994
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02170.1 | Symbols: | Transmembrane amino acid transporter ... 2532 0.0
> AT5G02170.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr5:427833-430695 FORWARD LENGTH=1830
Length=1830
Score = 2532 bits (1371), Expect = 0.0
Identities = 1677/1819 (92%), Gaps = 43/1819 (2%)
Strand=Plus/Plus
Query 1 TAGATGAAGCAACACGAGACAGTCGATGAAGAAAGGGAAGATTTGTAT--CACG--CAGA 56
|||||||||||| |||||||| ||||| |||||||||||||||||||| |||| | ||
Sbjct 24 TAGATGAAGCAAAACGAGACATTCGATCAAGAAAGGGAAGATTTGTATCACACGTTC-GA 82
Query 57 TGAGGAAGACGAAGAAAGTCAAACCGAGAGCTCCGTTCCGTCAACTCCTTTATCTCGTAA 116
||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 83 TGAGGAAGATGAAGAAAGCCAAACAGAGAGCTCCGTTCCCTCAACTCCTTTATCTCGTAA 142
Query 117 TGGATCCGATA-ACGTTCCCGTTCCGTGGCCTCGAAGTTATCGACAGTCTATGGATTTGT 175
||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 143 CAGATCCGA-AGACGTTCCCGTTCCGTGGCCTCGAAGTTATCGACAATCTATGGATTTGT 201
Query 176 TGACCGGAGTTACACCTCC-AATCAGTACAAGTTTTGTCTCTTCGTTTCGCCAGAGACGA 234
|||| |||||||||||||| | | |||||||||||||||||||| |||||||||||||||
Sbjct 202 TGACTGGAGTTACACCTCCGACT-AGTACAAGTTTTGTCTCTTCATTTCGCCAGAGACGA 260
Query 235 CAAATCTCTATTTTCGGTTCATTTACTTCTTCCCCAAGCAAACAGCAACTTCTCATCGAC 294
|||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 261 CAAAGCTCTGTTTTCGGTTCGTTTACTTCTTCACCAAGCAAACAGCAACTTCTCATAGAC 320
Query 295 AAAGATGAGATCCATAA-CTCTGTTATGTCATCCATCAATTCATTTCTTGCTTCTCATCT 353
||||| |||||||| || ||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 321 AAAGACGAGATCCA-AAGCTCTGTTGTGTCCTCCATCAAATCATTTCTTGCTTCTCATCT 379
Query 354 CCAGCTATCAGTCCCGGGGGATCTTTTAACTCCCCAAGAAAACCGCAGTTGCACATTCTC 413
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CCAGCTATCAGTCCCAGGGGATCTTTTAACTCCCCAAGAAAACCGCAGTTGCACATTCTC 439
Query 414 TCAATCCGTTCTCAACGGAATCAATGTTCTATGTGGAGTAGCTTTACTTACAATGCCTTA 473
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 440 TCAATCCGTTCTCAACGGAATTAACGTTCTATGTGGAGTAGCTTTACTTACAATGCCTTA 499
Query 474 CGCA-TTGAAAGAAGGAGGATGGTTAGGGCTTTTCATACTCTTCTCGTTTGGCATTATCA 532
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 500 CGCAGTT-AAAGAAGGAGGATGGTTAGGGCTTTTCATACTCTTCTCCTTTGGCATTATCA 558
Query 533 CTTTCTACACAGGCATTCTCCTCAAGAGATGTCTCGAGAATTCACCTGGAATCCACACTT 592
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 559 CTTTCTACACCGGCATTCTCCTCAAGAGATGTCTCGAGAACTCCCCTGGAATCCACACTT 618
Query 593 ATCCGGACATCGGTCAAGCTGCATTCGGTACTACTGGACGCATCCTCGTCTCTATACTGC 652
| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 619 ACCCGGACATCGGTCAAGCTGCATTCGGAACCACTGGACGCATCCTCGTCTCTATACTTC 678
Query 653 TCTACGTGGAGTTATACGCATCTTGTGTGGAATACATAATTATGATGAGTGATAATTTGT 712
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 679 TCTACGTAGAGTTATACGCATCTTGTGTGGAATACATAATCATGATGAGTGATAATTTGT 738
Query 713 CAAGGATGTTCCCAAATACCTCTTTATACATCAACGGATGTTCTTTAGATTCTAATCAAG 772
|||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 739 CAAGAATGTTCCCAAATACCTCCTTATACATCAACGGATTTTCTTTAGATTCTACTCAAG 798
Query 773 TTTTCGCCATTACCACGACTTTTATTGTTCTTCCTACTGTCTGGCTCAAAGACCTCAGCT 832
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 799 TTTTCGCCATTACCACGACTCTTATTGTTCTTCCTACTGTCTGGCTCAAAGACCTCAGCT 858
Query 833 TGTTGTCCTATCTCTCAGCCGGAGGTGTCTTCTCCTCAATTTTGCTTGCGCTTTCCCTCT 892
| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 859 TATTGTCCTATCTCTCAGCCGGAGGTGTCATCTCCTCAATCTTGCTTGCGCTTTGCCTCT 918
Query 893 TTTGGGCTGGATCAGTCGACGGGGTTGGATTTCACATAAGCGGACAAGCTCTCGATATAA 952
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 919 TTTGGGCTGGATCAGTAGACGGGGTTGGATTTCACATAAGCGGACAAGCTCTTGATATAA 978
Query 953 CTAACATACCTGTCGCCATTGGAATTTACGGGTTCGGTTTCGGGAGTCACTCTGTTTTCC 1012
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 979 CTAACATACCTGTCGCAATCGGAATTTACGGGTTCGGTTTCGGGAGTCACTCTGTTTTCC 1038
Query 1013 CCAACATTTACTCATCCATGAAAGAACCTTCCAAGTTTCCTATGGTGCTTCTCATCAGTT 1072
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1039 CCAACATTTACTCATCCATGAAAGAACCTTCCAAGTTTCCTACGGTGCTTCTCATCAGTT 1098
Query 1073 TTGCGTTTTGCACTCTATTCTACATCGCCGTAGCGGTTTGTGGATACACGATGTTTGGTG 1132
||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||
Sbjct 1099 TTGCGTTTTGCACTCTATTTTACATTGCGGTAGCGGTTTGTGGATTCACGATGTTTGGTG 1158
Query 1133 AAGCGATTCAATCCCAATTTACACTGAACATGCCTCAACATTTCACATCGTCTAAAATCG 1192
| |||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||
Sbjct 1159 ATGCGATTCAATCCCAATTTACACTGAACATGCCACCACATTTCACCTCATCTAAAATCG 1218
Query 1193 CAGTCTGGACAGCGGTCGTTACACCAATGACGAAATATGCTCTGACGATTACTCCAGTGA 1252
||||||||||||||||||| ||||||||||||||||| ||| | ||||| |||||||| |
Sbjct 1219 CAGTCTGGACAGCGGTCGTAACACCAATGACGAAATACGCTTTAACGATCACTCCAGTAA 1278
Query 1253 TGCTAAGCCTAGAAGAACTCATACCGTCTTCGTCAAGAAAGATGAGATCCAAAGGTGTCT 1312
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1279 TGCTAAGCCTAGAAGAACTCATACCGTCTTCATCAAGAAAGATGAGATCCAAAGGTGTCT 1338
Query 1313 CTATGCTTTTTAGAACCATCTTAGTTCTCTCCACTTTGGTCGTTGCACTCACAGTTCCAT 1372
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 CTATGCTCTTTAGAACCATATTAGTTCTCTCCACTTTGGTCGTTGCACTCACAGTTCCAT 1398
Query 1373 TCTTCGCTACCGTTGCGGCTCTGATTGGATCTTTTATCGCAATGCTTATCGCGTTAATAT 1432
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1399 TCTTCGCTACTGTGGCGGCTCTGATTGGATCTTTCATCGCAATGCTTATCGCGTTAATAT 1458
Query 1433 TCCCGTGTCTCTGTTACCTCAGCATTATGAAGGGTAGATTAACTAACTTTCAAATCGGAA 1492
|||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 1459 TCCCGTGTCTCTGTTATATCAGCATTATGAAGGGTAGATTAACTAACTTTCAGATTGGAA 1518
Query 1493 TTTGTATTTTAATCGTGATCATAGGCGTTGTGAGCGGTTGTTGCGGGACTTACTCTGCAA 1552
||||||||||||||||||| || ||| |||| |||||||||||||||||||| ||||| |
Sbjct 1519 TTTGTATTTTAATCGTGATAATCGGCATTGTAAGCGGTTGTTGCGGGACTTATTCTGCTA 1578
Query 1553 TCGCCAGATTAATCGGCGAGATGACCTAACTGGTTTTGCAGAATAAGTA--TAT-T-CGA 1608
||||||||||||||||||| ||||||| | ||||||||||||||||||| ||| | |||
Sbjct 1579 TCGCCAGATTAATCGGCGAAATGACCTGATTGGTTTTGCAGAATAAGTACGTATATTCGA 1638
Query 1609 AGGAATAAACCGGATGGTATACCTTGAATAAAACCGGTTTTTGATAAACCATTAtttttt 1668
||||||||||||| | ||||| |||||||||||||||||||||||||||| | |||||
Sbjct 1639 AGGAATAAACCGG-TA-TATAC-TTGAATAAAACCGGTTTTTGATAAACCAATGGTTTTT 1695
Query 1669 t-tgtgt-ga-a-t----ttt--ttttGGTATTT---ATTCATAAACCCTAGTTTTA-GT 1714
| |||| || | | ||| |||| | ||| ||| || | |||||||| ||
Sbjct 1696 TGTGTGAAGATAATCCAATTTGATTTTTTTTTTTGGTATTT-TATTCA-TAGTTTTAAGT 1753
Query 1715 CCATTTTACTCAATTTTAGTCTTCAttttttttCG-C-TT-GCTCATT-AAAAACTAA-T 1769
|||||||||||||| | |||||||||||||||| | || ||||||| ||||| ||| |
Sbjct 1754 CCATTTTACTCAATGT-AGTCTTCATTTTTTTTTTTCATTTGCTCATTTAAAAA-TAAAT 1811
Query 1770 AAATAAGAGAATATTTTGG 1788
|||||| ||||||||||||
Sbjct 1812 AAATAACAGAATATTTTGG 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88453360290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5