BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486997
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02200.2 | Symbols: FHL | far-red-elongated hypocotyl1-like ... 929 0.0
> AT5G02200.2 | Symbols: FHL | far-red-elongated hypocotyl1-like
| chr5:437460-438894 FORWARD LENGTH=708
Length=708
Score = 929 bits (503), Expect = 0.0
Identities = 572/606 (94%), Gaps = 2/606 (0%)
Strand=Plus/Plus
Query 646 AGCGATATCAACGATCCGATGATAGTTGCTGTGGAATCTCTAGACTCAAGCAAAAAGAGA 705
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 103 AGCGATATCAACGATCCGATGATAGTTGCTGTGGAATCTCTAGACACAAGCAAAAAGAGA 162
Query 706 AAACTGCGTGCTGAAGAATTAGACTTGTTACCCCTACCAAAACACTTTTG-TCTGGAGCA 764
||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| |||||
Sbjct 163 AAACTGCATGCTGAAGAATCAGACTTGTTACCCTTACCAAAACACTTTTGTTCT-GAGCA 221
Query 765 ACAAGCTTCTCTTGTTGATTCTTCATTTCCATCATCAGATATAGAATATGCAGAATGCTC 824
||||| ||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 222 TCAAGCCTCTCTTGTTAATTCTTCATGTCCATCATCAGTTATAGATTATGCAGAATGCTC 281
Query 825 TTATGCCATGGAGGACACAAAAACCAGCGATGAGGCCTCCTCTTCTGCATCCTTTACAGG 884
||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 282 TTATGCCATGGAGAACACAAAAACCAGCGATGAAGCCTCCTCTTCTGCATCTTTTACAGG 341
Query 885 CCCTTCTTTGTACATGTTTAAAGACTCTATTTATTCTACCGGAAGTTCTAGTTCTGGTTA 944
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 342 CCCTTCTTTGTACATGTTTAAAGACTCTATTTATTCAACCGGAAGTTCTAGTTCTGGTTA 401
Query 945 TGCTGCTACATCAAGCATAGAACAATGTTTTTCCAAAGTTGATCACAAAACACAAGAAGA 1004
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 402 TGCTGCTACATCAAGCATAGAACAATGCTTTTCCAAAGTTGATCACAAAACACAAGAAGA 461
Query 1005 TGCTGAAGACTTTACTCACATGGAATTCATTTGTCACGACTCCGAGTTTGCGGTTGAAGA 1064
| | ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 462 TACCCAAGACTTTACTCACATGGAATTCATTTATCACGACTCCGAATTTGCGGTCGAAGA 521
Query 1065 TCTTCAAGAGGTTCTGAATCCAGTTGGGTCTTATGTTCTTTCTTCTGCAAGGTGGAGTGT 1124
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 522 TCTTCAAGAGGTTCTGAATCCAGTTGAGTCTTATATTCTTTCTTCTGCAAGGTGGAGTGT 581
Query 1125 TGGCAACCAAGATTACGAAGAAGCTACCACGAAACCAACCATTGATCAAGAGTTTGAGCA 1184
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CAGCAACCAAGATTCCAAAGAAGCTACCACGAAACCAACCATTGATCAAGAGTTTGAGCA 641
Query 1185 GTACTTTTCAACACTCATGATGTAAACAACATGAATTTATCTACATATGTATCAGTATCA 1244
||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||| |||||
Sbjct 642 GTACTTTTCTACACTCATGATGTAAACAACAAGAATCTATCTACATATTTATCAATATCA 701
Query 1245 CTAATC 1250
||||||
Sbjct 702 CTAATC 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5