BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486999

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02220.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   451    2e-126


> AT5G02220.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:441707-442146 
REVERSE LENGTH=440
Length=440

 Score =  451 bits (244),  Expect = 2e-126
 Identities = 319/352 (91%), Gaps = 17/352 (5%)
 Strand=Plus/Plus

Query  1    GAGAGAAGAATGGAGGTGGTGGAGA-GAGCGACGGAAATGGCGGAGGAAGGATGTACGAC  59
            ||||||||||||||||||||||||| ||  |||||| |||||||||||||||||||||||
Sbjct  36   GAGAGAAGAATGGAGGTGGTGGAGAGGA-AGACGGAGATGGCGGAGGAAGGATGTACGAC  94

Query  60   GCCGAGAAGCAGGATTTATAGGATTCCGGTGGCGTCTGTTTGTCCACCGCCGCCGAGGAA  119
            ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  95   GCCGAGAAGCACGATGTATAGGATTCCGGTGGCGTCTGTTTGTCCACCGCCGCCGAGGAA  154

Query  120  GAAATTGATGGTGGTGAGGAAACGAGATCCGCCGAGGAACGGGTATTTTCAACCACCGGA  179
            ||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||
Sbjct  155  GAAGTTGATGGTGGTGAGAAAACGAGATCCGCCGAGGAACGGGTACTTTCAGCCACCAGA  214

Query  180  TCTGGAAACTTTGTTCTACGCACAGCCTCGAAGAAAAGCTTGCGCTTAGATATTGAGATT  239
            ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct  215  TCTTGAAACTTTGTTCTACGCACAGCCTCGAAGAGAAGCTTGCGCTTAGATTTTGAGATT  274

Query  240  TGATTTGAT---A-TT-TCTAGGGTTTTT----ACTTTCTTCTCTGTAGATACATGTTTA  290
            |||||||||   | || |||||| |||||    |||||||||||||||||||||||||||
Sbjct  275  TGATTTGATTTGAATTATCTAGGTTTTTTTTTTACTTTCTTCTCTGTAGATACATGTTTA  334

Query  291  TGATTTGTTCTCTTAGATTAGATTTTATC-AT-T--CAGAGAGATGACTTTG  338
             | ||||||||||||  |||||||||||  || |  ||||||||||||||||
Sbjct  335  GGGTTTGTTCTCTTA--TTAGATTTTATTTATCTTTCAGAGAGATGACTTTG  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15784073186


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5