BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487003 Length=2916 Score E Sequences producing significant alignments: (Bits) Value AT5G02250.1 | Symbols: EMB2730, RNR1, ATMTRNASEII | Ribonucleas... 4658 0.0 > AT5G02250.1 | Symbols: EMB2730, RNR1, ATMTRNASEII | Ribonuclease II/R family protein | chr5:454783-459527 FORWARD LENGTH=2911 Length=2911 Score = 4658 bits (2522), Expect = 0.0 Identities = 2795/2925 (96%), Gaps = 25/2925 (1%) Strand=Plus/Plus Query 1 AGAATTTCTCGTTTCTATCACCCGCTTCATTTGCCTTTCTATCGCCACAAGAACACACAG 60 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 3 AGAATTTCTCGTTTTTATCACCCGCTTCATTTGCCTTTCTATCGCCACAAGAACACAGAG 62 Query 61 AGAGAGCGATTTG-CCACTTCCGATATCGTTCGGATTTTGCTTCTTCATCTGAAGCTACG 119 ||||| ||||| | ||| |||||||||||||||| | ||||||||||||||||||||| Sbjct 63 AGAGAACGATTAGCCCAGTTCCGATATCGTTCGG---TGGCTTCTTCATCTGAAGCTACG 119 Query 120 ATGATTTCGGTTAGAGCAATCAATGGTTGCTCCATCATTCGCACCGCCACTTCCGCCGGC 179 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ATGATGTCGGTGAGAGCAATCAATGGTTGCTCCATCATTCGCACCGCCACTTCCGCCGGC 179 Query 180 GGCCCTCCCGTCTCTCTATTTCGCCACCGTATTCAGCGCCTTAGAGCTTCTCATCTCCGT 239 || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 180 GGTCCTCCCGTCTCTCTATTCCGCCACCGTATTCAGCGCCTCAGAGCTTCTCATCTCCGT 239 Query 240 GAATTCTCGAAATTAGGTTTAAATTTTCCACTACTCCG-GTCGAATAGGCGATTTCTCGG 298 ||||||||||||||| ||||||||||||||||| |||| | || ||||||| |||||||| Sbjct 240 GAATTCTCGAAATTACGTTTAAATTTTCCACTAATCCGCG-CGGATAGGCGGTTTCTCGG 298 Query 299 AAATAATGATGCTCCGAGCTGTTCGTCTTGCATTCATAGTCTGGTCGAAAGTGTTTCCGA 358 ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 299 AAATAGTGATGCTCCGAGCTGTTCGACTTGCATACATAGTCTGGTCGAAAGTGTTTCCGA 358 Query 359 AGAGCTCGAATCCATCAGCAGACGCAAGGGAAGCCGAATCCGAGTTCGTGCTAGCGTGAA 418 ||||||||||||||||||||||||||||||||||||||| ||||||| || || || || Sbjct 359 AGAGCTCGAATCCATCAGCAGACGCAAGGGAAGCCGAATGAGAGTTCGCGCCAGTGTAAA 418 Query 419 GGTGAAATTAACAAGCTACGGAGAGGTTCTGGAGGATAAGCTAGTAAACCAGGAACTGGA 478 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct 419 GGTGAAATTAACAAGCTACGGAGAGGTTCTAGAGGATAAGCTAGTAAACCAGGAGCTAGA 478 Query 479 GGCGGGTTTGCTTCTGGAGTTTAAGAAGGACGCAGAGAGAGTATTGTTGGCAGTTGTTCA 538 ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct 479 GGCTGGTTTGCTTCTGGAGTTTAAGAAGGACGCAGACAGAGTGTTGTTGGCAGTTCTTCA 538 Query 539 TAGACGTGATGGCAAGAAGAACTGGATGGTCTTTGATCAGAATGGTGTTACTTGTTCCAT 598 ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| Sbjct 539 TAGACGTGATGGCAAGAAGAATTGGATGGTGTTTGATCAGAATGGTGTTAGTTGTTCCAT 598 Query 599 CAAACCACAGCAAATTACGTACATCGTCCCAG-GTGTTTATAATTTTGATCATACAGGAC 657 |||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| Sbjct 599 CAAACCACAGCAAATTACATACATCGTCCC-GAATGTTTATAATTTTGATCATACAGGAC 657 Query 658 TTACTGATTTTCTCCAGAGGGCACAGGATAACTTGGATCCCCAACTGCTTGAGTTTGCTT 717 |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 658 TTACTGATTTTCTCCAAAGGGCTCAAGATAACTTGGATCCCCAACTGCTTGAGTTTGCTT 717 Query 718 GGATCGAGTTACTTGAGAAGAACAAACCTGTGACGCCAGAAGAGTTAGCAGAGATGATAT 777 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 718 GGATGGAGTTACTTGAGAAGAACAAACCTGTGACCCCAGAAGAGTTAGCAGAGATGATAT 777 Query 778 ATGGTCGAGCAGATCCTCTTGAAAGCTATTGTGCTCATTTTTTGCTATCACAAGACGAGA 837 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 ATGGTCGCGCAGATCCTCTTGAAAGCTATTGTGCTCATTTTTTGCTATCACAAGACGAGA 837 Query 838 TATACTTTTCTGTCTTGGAGTCAAAAGGTTCTCGATCAATATATAGCCCCCGGACTACTG 897 ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 838 TATACTTTTCTATCTTGGAGTCAAAAGGTTCTCGATCAATATATAGCCCTCGGCCTACTG 897 Query 898 AACAGGTGGAAGAGCTTTTACGAAGGCAACGCGTGAAGGAGGCAGAAGAGAAAGAGTTTC 957 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 898 AACAGGTGGAAGAGCTTTTACGAAGGCAACGCGTGAAGGAGGCAGAAGATAAAGAGTTTC 957 Query 958 AGGAGTTTATTCAATTGCTGAAGTCTGCCAAGAAGGCGCCTAGTCACGCCAAGCCCCCCA 1017 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 958 AGGAGTTTATTCAATTGCTGAAGTCTGCCAAGAAGGCACCTAGTCACGCCAAGCCCCCTA 1017 Query 1018 AATCTTCATGGCTAGCTGATGATAAAGTCCAAGATAGAATTGGCTCACTTGAAGCTTATG 1077 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1018 AATCTTCATGGCTAGCTGATGATAAAGTCCAAGATAGGATTGGCTCACTTGAAGCTTATG 1077 Query 1078 CCATTGATGCATGGGCAAGCACTGACCAGCAGAAATTGGCTGGAACGATCTTAAAATCCA 1137 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1078 CCATTGATGCATGGGCAAGCACTGACCAGCAGAAATTGGCTGGAACGATATTAAAATCCA 1137 Query 1138 TGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTC 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 TGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTC 1197 Query 1198 CTGTACATGTCAATCTTGAACTGCTTAAGCTGAATCTTCCAACCCACCACTCAGAAGCTA 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 CTGTACATGTCAATCTTGAACTGCTTAAGCTGAATCTTCCAACCCACCACTCAGAAGCTA 1257 Query 1258 TCACTGAAGCTGCTGAAGTTCTTCTTTCAGAATCATCTGATATTGATGCGGTTAGGAGGA 1317 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1258 TCACTGAAGCTGCTGAAGCTCTTCTTTCAGAATCGTCTGATATTGATGCGGTTAGGAGGA 1317 Query 1318 TTGATCTAACACACTTGAAGGTTTATGCAATTGATGTTGATGAGGCTGATGAGCTTGATG 1377 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 TTGATCTCACACACTTGAAGGTTTATGCAATTGATGTTGATGAGGCTGATGAGCTTGATG 1377 Query 1378 ATGCCCTCAGTGCAACGAGATTGCAGGATGGACGGATAAAGATCTGGATACATGTTGCTG 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 ATGCCCTCAGTGCAACGAGATTGCAGGATGGACGGATAAAGATCTGGATACATGTTGCTG 1437 Query 1438 ATCCTGCTAGATATGTTACACCTGGGAGTAAAGTGGACAGAGAGGCAAGGAGAAGGGGAA 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 ATCCTGCTAGATATGTTACACCTGGGAGTAAAGTGGACAGAGAGGCAAGGAGAAGGGGAA 1497 Query 1498 CTTCTGTCTTTCTGCCTACGGCTACTTATCCAATGTTTCCAGAAAAACTTGCCATGGAAG 1557 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1498 CTTCTGTCTTTCTGCCAACGGCTACTTATCCAATGTTTCCAGAGAAACTTGCCATGGAAG 1557 Query 1558 GAATGAGTTTAAGACAAGGAGAAAACTGCAATGCTGTCTCTGTGTCTGTTGTCCTGCGTT 1617 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1558 GAATGAGCTTAAGACAAGGAGAAAACTGTAATGCTGTCTCTGTGTCTGTTGTCCTGCGTT 1617 Query 1618 CTGATGGCTGTATTGCAGACTATTCAGTAGAGAATTCAATCATCAGACCAACCTATATGT 1677 |||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||| Sbjct 1618 CTGATGGCTGTATTACAGAATATTCAGTAGATAATTCAATCATCAGACCGACCTATATGT 1677 Query 1678 TGACATATGAAAGTGCTTCTGAGCTGCTTCACTTGAACCTAGAAGAAGAAGCTGAACTGA 1737 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1678 TGACGTATGAAAGTGCTTCTGAGCTGCTTCACTTGAACCTAGAAGAAGAAGCTGAACTGA 1737 Query 1738 AATTGCTGTCTGAGGCAGCTTTCATTCGCTCTCAATGGCGCCGTGAACAGGGTGCAGTGG 1797 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1738 AATTGCTGTCTGAGGCAGCATTCATTCGCTCTCAGTGGCGCCGTGAACAGGGTGCAGTGG 1797 Query 1798 ACACAACTACACTAGAAACTCGTATCAAAGTGGTGAATCCTGAGGATCCAGAGCCTTTGA 1857 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1798 ACACAACTACACTAGAAACTCGTATCAAAGTGGTGAATCCTGAGGATCCAGAACCTTTGA 1857 Query 1858 TAAATCTCTATGTAGAAAATCAGGCAGATCTAGCGATGAGACTTGTCTTTGAAATGATGA 1917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 TAAATCTCTATGTAGAAAATCAGGCAGATCTAGCGATGAGACTTGTCTTTGAAATGATGA 1917 Query 1918 TTCTTTGTGGGGAGGTTGTAGCAACGTTTGGGTCTCAGCATAATATTCCATTGCCATATA 1977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1918 TTCTTTGTGGGGAGGTTGTAGCAACGTTTGGGTCTCAGCATAATATTCCATTGCCATATA 1977 Query 1978 GAGGACAGCCTCAGTCAAATATTGATGTATCTGCATTTGCACATCTTCCAGAAGGACCCG 2037 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1978 GAGGACAGCCACAGTCAAATATTGATGTATCTGCATTTGCGCATCTTCCAGAAGGACCAG 2037 Query 2038 TACGTTCGTCATCCATTGTCAAAGTAATGCGTGCTGCAGAAATGAATTTCAGATGTCCTG 2097 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2038 TACGTTCCTCATCCATTGTCAAAGTAATGCGTGCTGCAGAAATGAATTTCAGATGTCCTG 2097 Query 2098 TTCGACATGGAGTGCTTGGAATTCCTGGTTACGTTCAGTTCACATCTCCCATTCGTCGTT 2157 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 2098 TTCGACATGGAGTGCTTGGAATTCCTGGTTACGTTCAGTTCACGTCTCCCATTCGTCGAT 2157 Query 2158 ACATGGATCTTACTGCACACTATCAGATTAAAGCTTTTCTTCGAGGAGGTGACAATTTTC 2217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2158 ACATGGATCTTACTGCACACTATCAGATTAAAGCTTTTCTTCGAGGAGGTGACAATTTTC 2217 Query 2218 CATTCTCGGCTGGTGAGTTAGAAGGTATAGCAGCATCCGTAAACATGCAAAGCAAGGTGG 2277 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 2218 CATTCTCTGCTGGTGAGTTAGAAGGTATAGCAGCATCCGTAAACATGCAGAGCAAAGTGG 2277 Query 2278 TGAGAAAGCTCTCAAACACCGGTCTCCGCTATTGGGTAATAGAGTTTCTCAGAAGACAAG 2337 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2278 TGAGAAAACTCTCAAACACCGGTCTCCGCTATTGGGTAATAGAGTTTCTCAGAAGACAGG 2337 Query 2338 AAAAGGGTAAAAAATACACCGCATTGATCTTGAGATTTGTCAAAGACCGGATCGCATCGC 2397 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 2338 AAAAGGGTAAAAAGTACACCGCATTGGTCTTGAGATTTGTCAAAGACCGGATCGCATCCC 2397 Query 2398 TTTTGTTGGTTGAGGTGGGTTTTCAAGCAACGGCGTGGGTGTCAGAAGGAAAACAAGTGG 2457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2398 TTTTGTTGGTTGAGGTGGGTTTTCAAGCAACGGCGTGGGTGTCAGAAGGAAAACAAGTGG 2457 Query 2458 GAGATGAAATCGAAGTTCGAGTAGAAGAAGCTCATCCCCGCGACGATCTTATTCTCTTCA 2517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2458 GAGATGAAATCGAAGTTCGAGTAGAAGAAGCTCATCCCCGCGACGATCTTATTCTCTTCA 2517 Query 2518 AAGAGGTTATCTAGAGAATTAAAAACACATAGTTCAGGAAAATTCATCAAAACCGGTTTC 2577 |||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||| Sbjct 2518 AAGAGGTTATCTAGAGCTTTAAAAACACACAGTTCAGGAAAATTCATTAAAGTCGGTTTC 2577 Query 2578 TCTAAACATGGAGATGCCTGGAACTGATAGAAAGCTTGTGTTTACAAAAGAGAAACTTGC 2637 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2578 TCTAAACATGGAGATGCCTGAAACTGATAGAAAGCTTGTGTTTACAAAAGAGAAACTTGC 2637 Query 2638 TGATGGACGCAGCCATTTTTGGGTTGAGCTATGACCTGCT-TAAAGAGTTGAGCACATGC 2696 ||||||||||||||||| ||| ||||||||||| ||||| |||| |||||| ||| | Sbjct 2638 TGATGGACGCAGCCATTGGTGGCTTGAGCTATGATCTGCTATAAA-AGTTGA--ACA--C 2692 Query 2697 ATGGTAATATGGTACGTACTTA-TAGGGTTCATACAATTTTACATCATGTTGTTATTGTA 2755 |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| || Sbjct 2693 ATGGTAATATGGTACGCACTTAATAGGGTTCATACAATTTTACATCATCTTGTTATTCTA 2752 Query 2756 AGTTAGT-ATAGGAAACTTGCTTTTTGTTCTCTAGAG-ATAAGGAAGAAAAAGGAATGTG 2813 ||| | | || |||||||||| ||| ||||| ||||| | ||||| ||||||||||||| Sbjct 2753 AGT-ATTTAT-GGAAACTTGCGTTT-GTTCTGTAGAGCA-AAGGATGAAAAAGGAATGTA 2808 Query 2814 -A-ATATACTATTTCAATGTTGAATTTGATCGATCTTAAAGTCCTTAAACAGAGCTCCAA 2871 | |||||||||||||||||||||||| || ||||| |||||| || |||||||||| || Sbjct 2809 TATATATACTATTTCAATGTTGAATTTTATTGATCT-AAAGTC-TTGAACAGAGCTCGAA 2866 Query 2872 GGCCTTAGAAAAATATCAACTTGATACAATTAAGATCGTAAGATT 2916 |||||||||||||||||||||||||| ||||||| || ||||||| Sbjct 2867 GGCCTTAGAAAAATATCAACTTGATATAATTAAGCTCTTAAGATT 2911 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 144932298327 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5