BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487008
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02290.1 | Symbols: NAK | Protein kinase superfamily protein... 2228 0.0
AT5G02280.1 | Symbols: | SNARE-like superfamily protein | chr5... 158 2e-37
> AT5G02290.1 | Symbols: NAK | Protein kinase superfamily protein
| chr5:470182-472627 REVERSE LENGTH=1605
Length=1605
Score = 2228 bits (1206), Expect = 0.0
Identities = 1340/1404 (95%), Gaps = 12/1404 (1%)
Strand=Plus/Plus
Query 193 GTGAGTTTCTT-GAGTTTTTAATGGGAGGTTGTTTCAGCAATCGGATCAAAACAGATATT 251
||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 212 GTG-GTTTCTTGGAG-TTTTAATGGGAGGTTGTTTCAGCAATCGGATTAAAACAGATATT 269
Query 252 GCTTCCAGTACATGGCTAAGTTCGAAATTCTTGAGTAGAGATGGGAGCAAGGGATCGTCG 311
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 270 GCTTCCAGTACATGGCTAAGTTCGAAATTCTTGAGTAGAGATGGGAGCAAGGGCTCGTCG 329
Query 312 ACCACCTCCTTCTCTTATATGCCTCGAACAGAAGGCGAGATCTTGCAAAATGCTAATCTG 371
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 ACCGCTTCCTTCTCTTATATGCCTCGAACAGAAGGCGAGATCTTGCAAAATGCTAATCTC 389
Query 372 AAGAACTTTAGTCTCACTGAGCTGAAATCTGCAACCAGGAATTTCCGGCCTGATAGTGTG 431
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 390 AAGAACTTTAGTCTCAGTGAACTGAAATCTGCAACTAGGAATTTCCGGCCTGATAGTGTG 449
Query 432 GTTGGTGAAGGTGGATTTGGTTGTGTTTTCAAAGGCTGGATCGATGAGGCCTCACTCACT 491
||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||
Sbjct 450 GTTGGTGAAGGTGGATTTGGTTGCGTTTTCAAAGGCTGGATCGATGAGTCCTCTCTCGCT 509
Query 492 CCTTCTAAACCGGGGACCGGGATTGTCATTGCAGTTAAAAGACTTAACCAAGAAGGGTTT 551
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 510 CCTTCTAAACCGGGGACCGGGATTGTCATTGCTGTGAAAAGACTTAACCAAGAAGGGTTT 569
Query 552 CAAGGTCATCGAGAGTGGCTGGCTGAGATCAATTATTTAGGCCAGCTGGATCATCCTAAC 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 CAAGGTCATCGAGAGTGGCTGGCTGAGATCAATTATTTAGGCCAGCTGGATCATCCTAAC 629
Query 612 CTTGTGAAACTGCTTGGATACTGCTTGGAAGAGGAGCACAGGCTTCTTGTTTACGAGTTT 671
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 CTTGTGAAACTGATTGGATACTGCTTGGAAGAGGAGCACAGGCTTCTTGTTTACGAGTTT 689
Query 672 ATGCCCCGTGGTAGTCTTGAGAATCACTTATTCAGAAGAGGAACATTCTATCAGCCACTT 731
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 ATGACTCGTGGTAGTCTTGAGAATCACTTATTCAGAAGAGGAACATTCTATCAGCCACTT 749
Query 732 TCATGGAACACGCGGGTTCGAATGGCTCTTGGTGCAGCTAGAGGACTTGCTTTTCTTCAC 791
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 750 TCATGGAACACGCGGGTTCGTATGGCTCTTGGTGCAGCTAGAGGACTTGCTTTTCTTCAC 809
Query 792 AATGCTCAACCGCAAGTTATATACCGAGACTTCAAAGCATCCAACATCTTGCTAGATTCG 851
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 810 AATGCTCAACCGCAAGTTATATACCGAGACTTCAAAGCATCTAACATCTTGCTAGATTCG 869
Query 852 AACTACAATGCAAAGCTTTCGGATTTCGGTTTGGCTAGAGATGGTCCAATGGGTGACAAT 911
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AACTACAACGCAAAGCTTTCGGATTTCGGTTTGGCTAGAGATGGTCCAATGGGTGACAAC 929
Query 912 AGCCATGTTTCTACCAGAATCATGGGAACTCAGGGATACGCTGCTCCAGAATATCTAGCT 971
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AGCCATGTTTCTACCAGAGTCATGGGAACTCAGGGATACGCTGCTCCAGAATATCTAGCT 989
Query 972 ACAGGTCATTTATCGGCGAAGAGCGATGTGTACAGTTTCGGGGTTGTGTTACTGGAGTTG 1031
|||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 990 ACAGGTCATTTATCGGTGAAGAGCGATGTATACAGTTTTGGGGTTGTGTTACTGGAGTTG 1049
Query 1032 TTATCAGGAAGACGAGCAATTGACAAGAATCAACCAGTAGGAGAACACAATCTAGTGGAT 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1050 TTATCAGGAAGACGAGCAATTGACAAGAATCAACCAGTAGGAGAACACAATCTCGTGGAT 1109
Query 1092 TGGGCAAGACCTTACTTAACAAACAAGAGAAGACTTCTGCGGGTGATGGATCCTCGCCTC 1151
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1110 TGGGCAAGACCCTACTTAACAAACAAGAGAAGACTTCTGCGAGTGATGGATCCTCGTCTC 1169
Query 1152 CAAGGTCAATACTCGCTAACCCGAGCTTTGAAAATTGCAGTTCTTGCACTCGATTGCATA 1211
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 CAAGGTCAATACTCACTAACCCGAGCTTTGAAAATTGCAGTTCTTGCACTCGATTGCATA 1229
Query 1212 TCCATAGATACCAAGAGTAGACCGACCATGAACGAAATCGTCAAGACACTGGAAGAACTT 1271
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1230 TCTATAGATGCCAAGAGTAGACCGACCATGAACGAAATCGTCAAGACAATGGAAGAACTT 1289
Query 1272 CATATCCAGAAGGAAGTACCGAAAGAGCAGCAGAATCCACAAATCAGCATTGACATCAAC 1331
|||||||||||||||| | | ||||||||||||||||| |||||||||||||||| || |
Sbjct 1290 CATATCCAGAAGGAAGCATCAAAAGAGCAGCAGAATCCTCAAATCAGCATTGACAACATC 1349
Query 1332 ATCAACAAATCTCCACAAGCTGTGAATTATCCTAGGCCTTCAATTATGTAACAATAAAAT 1391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 ATCAACAAATCTCCACAAGCTGTGAATTATCCTAGGCCTTCAATTATGTAACAAT----- 1404
Query 1392 TATCCTAGGCAATCTTTTTACCGGGTTCTAGAGATGTATAGACTCTTTACCATCTGTCTG 1451
||||||| | || ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1405 ---CCTAGGCGAGCTATTTACCGGGTTTTAGAGATGTATAGACTCTTTACCTTCTGTCTG 1461
Query 1452 TTTAGGTATTATGCTGTTTGGTAGTAACAAAAGAACTGGCAATGTAAGGGAGAGAAGGAA 1511
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1462 TTTAGATATTATGTTGTTTGGTAGTAACAAAAGAGCTGGCAATGTAAGGGAGAGAAGGAA 1521
Query 1512 ACTTAATAGTTGTAAACTTAGGTCCCCTTACAACGTTCACATGTTATCTCACATAAAATA 1571
||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| || |
Sbjct 1522 ACTTACTAGTTGTAAACTTAGGTTCTCTTACAACGTTCACATGTTATCTCACATACAA-A 1580
Query 1572 ATGTTAACAGGATAAGAAAACCAC 1595
|||||| |||||||||||||||||
Sbjct 1581 ATGTTATCAGGATAAGAAAACCAC 1604
> AT5G02280.1 | Symbols: | SNARE-like superfamily protein | chr5:469298-470285
FORWARD LENGTH=661
Length=661
Score = 158 bits (85), Expect = 2e-37
Identities = 98/104 (94%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 1492 AATGTAAGGGAGAGAAGGAAACTTAATAGTTGTAAACTTAGGTCCCCTTACAACGTTCAC 1551
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 661 AATGTAAGGGAGAGAAGGAAACTTACTAGTTGTAAACTTAGGTTCTCTTACAACGTTCAC 602
Query 1552 ATGTTATCTCACATAAAATAATGTTAACAGGATAAGAAAACCAC 1595
||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 601 ATGTTATCTCACATACAA-AATGTTATCAGGATAAGAAAACCAC 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78764655105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5