BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487012
Length=2348
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02370.1 | Symbols: | ATP binding microtubule motor family ... 3243 0.0
AT5G02380.1 | Symbols: MT2B | metallothionein 2B | chr5:506498-... 405 1e-111
> AT5G02370.1 | Symbols: | ATP binding microtubule motor family
protein | chr5:503408-507244 FORWARD LENGTH=2417
Length=2417
Score = 3243 bits (1756), Expect = 0.0
Identities = 2156/2344 (92%), Gaps = 48/2344 (2%)
Strand=Plus/Plus
Query 41 TTGTTGGATTCTTCTTCGATTTCTAAAGTCAGGGTCGTCCTTAGGGTTCGTCCTTTTCTT 100
||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 70 TTGTTAGATTCGTCTTCGATTTCTAATGTCAGAGTCGTCCTTAGGGTTCGTCCTTTTCTT 129
Query 101 CCCC----G-----GGACGAG-G--G-G-C----GATCGTGCGTTTCCGTAATCAACAGC 142
|||| | ||||||| | | | | |||||||||||||||||||| | ||
Sbjct 130 CCCCGGGAGATTTCGGACGAGAGTTGTGACGGGAGATCGTGCGTTTCCGTAATCGGCGGC 189
Query 143 GATGCCGGAGAGGCTAGCGAAGTGACAGTTCACCTCAAAGATCCAGAGAGCTGTCGTAAC 202
|||| ||||| | ||||||||| | ||| |||||||||||||||| ||||||||||||
Sbjct 190 GATGGAGGAGATACCAGCGAAGTGGCGGTTTACCTCAAAGATCCAGATAGCTGTCGTAAC 249
Query 203 GAAAGCTATCAGCTGGATGCGTTTTACGGGAGAGATGATGATAATGTGAAGCAGATATTC 262
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 250 GAAAGCTATCAGCTGGATGCGTTTTACGGGAGAGAGGATGATAATGTGAAGCATATATTC 309
Query 263 GATAGAGAATTAAGCCCTTTGATTCATGGGATCTTTCATGGTTTCAACGCTACAGTGCTT 322
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 310 GATAGAGAAGTAAGCCCTTTGATTCCTGGGATCTTTCATGGTTTCAATGCTACTGTGCTT 369
Query 323 GCTTATGGAGCCACCGGAAGCGGAAAGACGTTTACGATGCAGGGAATTGATGAGCTACCA 382
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 370 GCTTATGGAGCCACCGGAAGCGGAAAGACTTTTACGATGCAGGGAATCGATGAGCTACCA 429
Query 383 GGTCTGATGCCATTGACCATGTCCAACATTCTGTCTATGTGCGAGAAGAC-AGGAAGTAG 441
||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||
Sbjct 430 GGTCTGATGCCATTGACCATGTCCACCATTCTGTCTATGTGCGAGAAGACAAGG-AGTAG 488
Query 442 AGCAGATATTTCATATTATGAAGTTTACATGGACAGATGTTGGGATC-TCTTAGAAGTTA 500
|| || |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 489 GGCTGAGATTTCATATTATGAAGTTTACATGGACAGATGTTGGGATCTTC-TAGAAGTTA 547
Query 501 AAGCCAATGAGATTGCTATTTGGGATGAT-AAGAATGGACAAGTTCATCTTAAGGGACTT 559
||| ||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 548 AAGACAACGAGATTGCTGTTTGGGATGATAAAG-ATGGACAAGTTCATCTTAAGGGACTT 606
Query 560 TCTAGTGTCCCTGTTAACTCCATGCCTGAGTTTCACGAGGCATACTCGTGTGGCGTTCAG 619
||||||||||||||||| |||||| |||||||||| ||||| || | |||||||||||||
Sbjct 607 TCTAGTGTCCCTGTTAAGTCCATGTCTGAGTTTCAAGAGGCGTATTTGTGTGGCGTTCAG 666
Query 620 CGGAGGAAAGTTGCACACACTGGTTTAAATGATGTCTCTAGTAGAAGCCATGGAGTGCTT 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGAGGAAAGTTGCACACACTGGTTTAAATGATGTCTCTAGTAGAAGCCATGGAGTGCTT 726
Query 680 GTGATCTCAGTAACCTCTCAAGGGGCT-GTCACTGGAAAAATCAATTTGATTGACCTGGC 738
||||||||||||||||| |||||| || |||||||| ||||||||| ||||||| || ||
Sbjct 727 GTGATCTCAGTAACCTCACAAGGG-CTTGTCACTGGTAAAATCAATCTGATTGATCTTGC 785
Query 739 AGGTAACGAAGATAATAGAAGGACAGGCAATGAAGGAATCCGTCTT-CAAGAGAGTGCCA 797
|||||||||||| ||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 786 AGGTAACGAAGACAATAGAAGGACAGGCAATGAAGGGATCCGT-TTACAAGAGAGTGCCA 844
Query 798 AGATTAATCAGTCATTATTTGCTTTGTCCAATGTGGTTTATGCACTGAATAATAACCTGC 857
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 845 AGATTAATCAGTCATTATTTGCATTGTCCAATGTGGTTTATGCACTGAATAATAACCTCC 904
Query 858 CAAGAGTTCCTTACAGGGAAAGCAAATTGACTAGAATCCTGCAGGATTCACTTGGAGGAA 917
| ||||| || |||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 905 CTAGAGTGCCATACAGGGAAACCAAATTGACTAGAATACTGCAGGATTCACTTGGTGGAA 964
Query 918 CAAGTAGGGCTCTCATGGTCGCATGTCTGAATCCTGGAGAATACCAAGAATCTCTTCGCA 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 CAAGTAGGGCTCTCATGGTCGCATGTCTGAATCCTGGAGAATACCAAGAATCTCTTCGCA 1024
Query 978 CTGTTAGCTTGGCTGCAAGGTCAAGGCACATTTCAAACAATATTTCTTTGAATCCCAAGG 1037
| |||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 1025 CCGTTAGCCTGGCTGCAAGGTCAAGGCACATCTCAAACAATGTTTCTCTGAATCCCAAGG 1084
Query 1038 TAGAGACCCCCAAGGTTAAGATAGATATGGGAGCAAAACTGCAAGCTTGGCTTGAATCAA 1097
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1085 TAGAGACCCCCAAGGTTAAGATAGACATGGAAGCAAAACTGCAAGCTTGGCTTGAATCAA 1144
Query 1098 AAGGCAAGACGAAAAGTGCGCATAGAATGATGGCAATACGTTCTCCATTGATGGGTACAA 1157
||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1145 AAGGCAAGATGAAGAGCGCGCATAGAATGATGGCAATACGGTCTCCATTGATGGGTACAA 1204
Query 1158 ACCAGACTTCAATTTCTCAAAGCTCAGTCAAGAAACT-CGGATGTCAAAGATCAACCATT 1216
||||||||||||||||||||||||||||||||||| | | ||||| |||||| |||||
Sbjct 1205 ACCAGACTTCAATTTCTCAAAGCTCAGTCAAGAAATTACTC-TGTCATAGATCAGCCATT 1263
Query 1217 GCAGAAAGTGCTAAACTTGCTGGCACAGGACAGAGGGACGCATTTGTGACCGCAAGGAAC 1276
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1264 GCAGAAAGTGCTAAGCTTGCCGGCACAGGACAGAGGGACGCATTTGTGACCGCAAGAAAC 1323
Query 1277 TTATTTGGTGGGGAAACTCATGCTGCTTCACATTTATGGGAACCAATACAGAATCTGCAC 1336
|||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 1324 TTATTTGGTGTGGAAACTCTTGCTGCTTCACATTTATGGGAACCTATACGGAATCTGCAG 1383
Query 1337 TTAGCTTCTCCAACCAAAGGAGATGAGAGAGACACATCTGCCAAAGATAATCTATTGGTA 1396
||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||||||
Sbjct 1384 TTAGCTTCTCCAACCAAAGAAGATGAGAGAGACACATCTGGCGAAGAGAATCTATTGGTA 1443
Query 1397 CCAGAAGCAAGCTTGAGAGATAACTCACTCGG--GCTCGAAAAGGAATACACAGAACTGA 1454
||||||||||||||||||||||| || | || | |||| ||| |||| || |||||||
Sbjct 1444 TCAGAAGCAAGCTTGAGAGATAACACATT-GGATG-TCGAGAAGAAATATACTGAACTGA 1501
Query 1455 GTCCTTTTCGAGAAGCTCTGTCTCCAGTAGACTCAAATGCA---CCAAAATCAGCAGATG 1511
||||| ||||||||||||| |||||| ||||||| |||||| ||||| |||||| | |
Sbjct 1502 GTCCTCTTCGAGAAGCTCTATCTCCAATAGACTCCAATGCAAAACCAAATTCAGCACACG 1561
Query 1512 CAAGCTCTCCCATTCTCAAGCCAATGACTCCAAAAACACCTTTTATTTATGCAAATGCTG 1571
||||||||| |||| ||||||||||| ||||||||||||||| ||| | |||| |||
Sbjct 1562 GAAGCTCTCCTTTTCTGAAGCCAATGACCCCAAAAACACCTTTTCTTTCTACAAACCCTG 1621
Query 1572 AGAAT-ATGCAAATGGAAGGCACTTGCCAGAAGTTCAATGCATGGAGCACTAATTTAAAG 1630
| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1622 A-AATTATGCAGATGGAAGGCACTTGCCAGAAGTTCAATGCATGGAGCAATAATTTAAAG 1680
Query 1631 ACCTCTCTCATAAAAGAGTACATTCACTTCTTGAACACAGCCAACAGAAAGGAGCTAAGG 1690
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1681 ACCTCTCTCATAAAAGAGTACATTCACTTCTTGAACACAGCCAACAGAGAGGAGCTAAGG 1740
Query 1691 GAGTTAAAGGGAATTGGACAGAAGATGGCTGAGTACATTATTGAACTCAGAGAAACAAGC 1750
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1741 GAATTAAAGGGAATTGGGCAGAAGATGGCTGAGTACATCATTGAACTCAGAGAAACAAGC 1800
Query 1751 CCTTTAAAATCGCTTACCGACTTAGAGAAGATCGGTTTCACCTCAAGACAGGTACATAAC 1810
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1801 CCTTTAAAATCGCTTACCGACTTAGAAAAGATCGGTTTCACCTCAAGACAGGTACATAAC 1860
Query 1811 CAATTCAAAAAAGCCACAGAAGGAATTCTTGAGAAGCCAGTTTCTGCTTCAACAACACCT 1870
| ||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||
Sbjct 1861 CTATTCAAAAAAGCCACTGAAGGAGTCCTCGAGAAGCCAGTTTCTGCTTCAACAACACCT 1920
Query 1871 TAGTTGTTGTCTCTAGCAAACAAACAACACTTGTGTATTATG--AGTTCTGTCTCGCGTA 1928
||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||
Sbjct 1921 TAGTTGTTGTCTCTAGCAAACAA-CAACACTTGTGTATTATATCAGTTCTATCTCGTGTA 1979
Query 1929 ATCTCATTATTGTCTGTTCTTGTTTGTTTAA-CTTTATAACCAGAGAGATA-TGTACTTG 1986
|| |||||||||||||||||||| ||||||| ||||||||||||||||| | || ||||
Sbjct 1980 ATTTCATTATTGTCTGTTCTTGTATGTTTAAGCTTTATAACCAGAGAGACAATGGGCTTG 2039
Query 1987 AATCTTAATTGTGTACTGAGCAAGAAAGAAGCAAACTTTAATACAGACCCATAATAGTTT 2046
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2040 AATCTTAATTGTGTAGTGAGCAAGAAAGAAGCAAACTTTAATACAAACCCATAATAGTCT 2099
Query 2047 TCG-ATTAATACAGTCACAAAGATAAAACTTTGCAGAGATATCTTAATGACCAAACCATA 2105
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 TAGGATTAATAAAGTCACAAAGATAAAACTTTGCAGAGATATCTTAATGACCAAACCATA 2159
Query 2106 AAA-CACACAGAAGAAAGAAGAGAAAGACCAACGTCGCCGGCAAAACTACCGGCGACATC 2164
||| |||||| | ||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 2160 AAAACACACACA-GAA-GAAGAGAAAGACCAACGTCGCCGGCAAAACTACCGGAAAAATC 2217
Query 2165 AGCTAATTATTACATATAAGCAAACCTAACATAACATTAGGGTTATTACAGACTTAGGGT 2224
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 AGCCAATTATTACATATAAGCAAACCTAACATAACATTAGGGTTATTACAGACTTAGGGT 2277
Query 2225 TTATGGAGTTCTTCATTTGCAGCCAGATCCGCAACCACAGCTTCCACCACAGCAAGACAT 2284
||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 2278 TTATGAAGTTCTTCATTTGCAGGCAGATCCACAACCACAGCTTCCACCACAGCAAGACAT 2337
Query 2285 GTTTTTTCTAGAAAATTGGAAGAGATCTCAGAAGAATTATGAAGATGATCTTAATTTGCC 2344
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2338 GTTTTTTCTAGAAAATTGGAAGAGATCTGAGAAGATTTATGAAGATGATCTTAATTTGCC 2397
Query 2345 TTAA 2348
||||
Sbjct 2398 TTAA 2401
> AT5G02380.1 | Symbols: MT2B | metallothionein 2B | chr5:506498-507244
REVERSE LENGTH=571
Length=571
Score = 405 bits (219), Expect = 1e-111
Identities = 251/266 (94%), Gaps = 4/266 (2%)
Strand=Plus/Minus
Query 1983 CTTGAATCTTAATTGTGTACTGAGCAAGAAAGAAGCAAACTTTAATACAGACCCATAATA 2042
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 568 CTTGAATCTTAATTGTGTAGTGAGCAAGAAAGAAGCAAACTTTAATACAAACCCATAATA 509
Query 2043 GT-TTTCGATTAATACAGTCACAAAGATAAAACTTTGCAGAGATATCTTAATGACCAAAC 2101
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GTCTTAGGATTAATAAAGTCACAAAGATAAAACTTTGCAGAGATATCTTAATGACCAAAC 449
Query 2102 CAT-AAAACACACAGAAGAAAGAAGAGAAAGACCAACGTCGCCGGCAAAACTACCGGCGA 2160
||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 448 CATAAAAACACACA-CAG-AAGAAGAGAAAGACCAACGTCGCCGGCAAAACTACCGGAAA 391
Query 2161 CATCAGCTAATTATTACATATAAGCAAACCTAACATAACATTAGGGTTATTACAGACTTA 2220
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AATCAGCCAATTATTACATATAAGCAAACCTAACATAACATTAGGGTTATTACAGACTTA 331
Query 2221 GGGTTTATGGAGTTCTTCATTTGCAG 2246
||||||||| ||||||||||||||||
Sbjct 330 GGGTTTATGAAGTTCTTCATTTGCAG 305
Score = 178 bits (96), Expect = 2e-43
Identities = 104/108 (96%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 2241 TTGCAGCCAGATCCGCAACCACAGCTTCCACCACAGCAAGACATGTTTTTTCTAGAAAAT 2300
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTGCAGGCAGATCCACAACCACAGCTTCCACCACAGCAAGACATGTTTTTTCTAGAAAAT 65
Query 2301 TGGAAGAGATCTCAGAAGAATTATGAAGATGATCTTAATTTGCCTTAA 2348
|||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 64 TGGAAGAGATCTGAGAAGATTTATGAAGATGATCTTAATTTGCCTTAA 17
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116565665490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5