BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487015
Length=2497
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02390.1 | Symbols: | Protein of unknown function (DUF3741)... 3661 0.0
> AT5G02390.1 | Symbols: | Protein of unknown function (DUF3741)
| chr5:508637-511710 REVERSE LENGTH=2635
Length=2635
Score = 3661 bits (1982), Expect = 0.0
Identities = 2350/2524 (93%), Gaps = 39/2524 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAGAACTTGCGTCACAAAGTTACTTGCTCCCCAATCCAAAACCACCCTGGATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAGAACTTGCGTCACAAAGTTACTTGCTCCCCAATCCAAAACCACCCTGGATTC 60
Query 61 ATGTGGGGAT-TATTTGACATTCTTAAGCATAACCATTGGCGTTACATCAAGAAACGACT 119
|||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 ATGTGGGG-TCTATTTGACATTCTTAAACACAACCATTGGCGTTACATCAAGAAACGACT 119
Query 120 TCCTCATAAAAGACCCGTTATTTGTAGAAGAAATTCTCCTGGAACAAAAAGCGAAGCAAA 179
|||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |||
Sbjct 120 TCCTCACAAAAGACCCG---TTTGTAGAAGAACCGCTCCTGGAACAAAAAACGAAGTAAA 176
Query 180 C-A-AC---A-CA--ATC-CCAGATGGTATTCCCGTACCCAAGACCAAGCTGGAAGATAA 230
| | || | || ||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 177 CAACACTATACCATCATCACCAGATGGTATTCCAGTACCCAAGATCAAGCTGGAAGATAA 236
Query 231 AACAGATGTAGACTCTGGGCAAAGGCCAAAGAGGCCTAGTTCTGCAGTAAAATCCAAAGA 290
|||||||||||| |||| |||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 237 AACAGATGTAGAATCTGTGCAAAGACCAAAGAAGCCTAGTTCTGCAGTAAAGTCCAAAGA 296
Query 291 GTCTTCTAACTCAGGGGAGAAACCAAAAAAGAAGCATATTTCAGAGGAGAAGTCCAAGAA 350
|||||| |||||||| |||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 297 GTCTTCCAACTCAGGAGAGAAAACAAAAAAGAAGCATAATCCAGAGGAGAAGTCCAAGAA 356
Query 351 ACTTAATTCAGAAGAGAGGTCAAGAAAAACACATTCTGAAATCAAAAGATCTGTCAAGGC 410
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 357 ACTTAATTCAGAAGAGAGGTCAAGAAAAACACATTCTGAAATCAAAAGGTCTGTGAAAGC 416
Query 411 TTTGATCAAGGCACTTGTAATAGAGGACAAGTCTAAGAAGAAAGGCCGTCATCACCGTAG 470
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 TTTGATCAAGGCACTTGTAATAGAGGACAAGTCTAAGAAGAAAGGCCGTCACCACCGTAG 476
Query 471 CTGTACTTATCCTGTCCAGTCAAATC-CAAAAGAGAAGGAGTCATTGAGTGAGGTTGAAT 529
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||
Sbjct 477 CTGTACTTATCCTGTCCAGTCAAA-CTCAAAAGAGAAGGATTCATTGAGTGAGGTTGGAT 535
Query 530 CTTCAGACAAGAATTCCTCAAATGGTGATGATCGTAACCGAGTCTTTAACAAGACGGTTG 589
||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 536 CTTCAGATAAGAATTCCTCAAATGGTGATGAACGTAACCGTGTCTTTAACAAGAAGGTTG 595
Query 590 GCATTTCACCCGCGATTGGTTCTTTGAACCCGCTTTATCTCATGTCTGAGGAATCAAGCA 649
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 596 GCATTTCACCCGCGGTTGGTTCGTTGAACCCGCTTTATCTCATGTCTGAGGAATCAAGCA 655
Query 650 ACAGTGACAGTGAAGAGTTTAGAGTAGAGAACAACATTCAAGTTGATGAT---ACTGATG 706
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 656 ACAGTGACAGTGAAGAGTTTAGAGTAGATAACAACATTCAAGTTGATGATAACACTGATG 715
Query 707 GAAGTAAATCAGATTTTGATGAAAAAGAGTTCAAGAAAAAGGACAAGAGCGACGATGATG 766
|||| |||||||||||||||||||||||||| |||||||| || ||||| || ||||| |
Sbjct 716 GAAGCAAATCAGATTTTGATGAAAAAGAGTTTAAGAAAAAAGAGAAGAGTGATGATGAGG 775
Query 767 AAGCTTGGTTTGACCCAAAGATGAGACACAACAAGGACTTCTCAGAGAATGAGGATGATA 826
|||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||
Sbjct 776 AAGCTTGGTTTGACCCAAAGATGAGACACACCAAGGGCTTCTCAGAAAATGATGATGATA 835
Query 827 CATCACCTAGACGGTCAAAAGCATGTCTTGATGCTCTTAATTTGATACACATGAATAGAA 886
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 836 CATCACCTAGAAGGTCAAAAGCATGTCTTGATGCTCTTAACTTGATACACATGAATAGAA 895
Query 887 ACTTCTTGTTGAAA-GTATTGCAGGATCCGGGTTCTCCTCTAGCCCGGCATTTCCAGAGC 945
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ACTTCTTGTT-AAAGGTATTGCAGGATCCGGGTTCTCCTCTAGCCCGGCATTTCCAGAGC 954
Query 946 CAACAATCTTTTAGCTCAAAAACAATGACTAAAGCTGGATCCTTTCCTACTCATGGAAGC 1005
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |
Sbjct 955 CAACAATCTTTTAGCTCCAAAACTATGACTAAAGCTGGATCCTTTCCTACTCATGGTATC 1014
Query 1006 AACAGAGAGGATCATAATAATGGGTTTGACTCAGTGGGAGATATCCATAAAAAACC-A-- 1062
|| ||||||||||||||||| | ||||||| | ||||||||| || |||||| ||| |
Sbjct 1015 AATAGAGAGGATCATAATAAAGCGTTTGACCCGGTGGGAGATGTCGATAAAATACCGATG 1074
Query 1063 ACAT-CTCCTTCCATAGCTGCAGAGCACAGAGCTGATGGGATTCAGAAGATGAATGAAAC 1121
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TC-TCCTCCTTCCATAGCTGCAGAGCACAGAGCTGATGGGATTCAGAAGATGAATGAAAC 1133
Query 1122 AATGTTGAAATTGGCTGATGAAGATTCATCTGGTTCTGGTTATGCAAGGAAGCGAGGAAA 1181
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AGTGTTGAAATTGGGTGATGAAGATTCATCTGGTTCTGGTTATGCAAGGAAGCGAGGAAA 1193
Query 1182 GAACCAAGTTGTGATCAAACGTTTTAAGGATCTAAGGCAGAAGATTAAGCATGTGATTAA 1241
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1194 GAACCAAGTTGTGATCAAACGTTTCAAGGATCTAAGACAGAAGATAAAGCATGTGATTAA 1253
Query 1242 CGAGAACAAGAATGAGAAACACCGTATCACTATGGATGCTGTTTTAGACAAAGTACCTCG 1301
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1254 TGAGAACAAGAACGAGAAACACCGTATCACTATGGATGCTGTGTTGGACAAAGTACCTCG 1313
Query 1302 AAAGTACGGTTTTTCTAAAGATTTGAGAGACGACATTTTTGCACACTTAAAAGGAAACTC 1361
|||||||||||||| ||||||||||||||||| ||||| | |||||| |||||||||||
Sbjct 1314 GAAGTACGGTTTTTCGAAAGATTTGAGAGACGATATTTTCGAACACTTGAAAGGAAACTC 1373
Query 1362 TGCAGCTAAGAGCAGCATCAAAGCAGATGGCGTGAAGCTGAAGCAAATAACTAGAGCATC 1421
||||||||||| || || ||||||||| || || |||||||||||||| ||||| ||
Sbjct 1374 TGCAGCTAAGAACAACAACAAAGCAGAAGGTACAAAACTGAAGCAAATAACAAGAGCTTC 1433
Query 1422 GTCGCTGTGTGGATCGCTAGACAGATATCTTCAGCTCTATGAGTGTAGCTTCCAAAGAGA 1481
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GTCGCTGTGTGGTTCGCTGGATAGATATCTTCAGCTCTATGAGTGTAGCTTCCAAAGAGA 1493
Query 1482 CGCGAAGAACAATAGTAATTCAGAGAAACCAAAGATGGAGTTAGAGGAATCGGCTTTGCC 1541
|||||||||| |||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 1494 AGCGAAGAACAGTAGTAATTCAGAGAAATCAAAGATGGAGTTAGAGGAATCAGCGTTGCC 1553
Query 1542 TTCTAAGAGAGCTCCTAAATTCTTGGGAAGGATTCTTTCGTTACCTGAAATGAAATTTAA 1601
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 1554 TTCTAAGAGAGCTCCTAAATTCTTGGGGAGGATTCTTTCGTTACCTCAAATGAAATTTCA 1613
Query 1602 TGCTTTGAAGATTGATGACCTTCCTGTCCAATCAATCGAGGAAGAACAAGTTGGTTTGGA 1661
|||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||
Sbjct 1614 TGCTTTGAAGATTGATGACCTTACTGTCCAATCAATAGAGGAAGAACAAGATGGCTTGGA 1673
Query 1662 TAACATTTCAGAGATCTCAGAAGATCACTCTCAATCTTCAGAACATGAAACACTTGATCA 1721
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1674 CAACATTTCAGAGATCTCAGAAGATCACTCTCAGTCTTCAGAACATGAAACACTTGACCA 1733
Query 1722 AACAAT-GAGTGCTTCTGAAGATTCACCAGTTGACGCAGAAACAGAACAAGACAGAGACA 1780
|||||| || ||||||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1734 AACAATGGA-TGCTTCTGAGGATTCACCCGTTGATGCAGAAACAGAACAAGACAGAGAGA 1792
Query 1781 TCTCTACGCTTGTCGACGCTGAAAC-TGAAACAAGATCTTTAAAAGAATCATCAGAAGAA 1839
||||||||| | | |||| || ||| |||||||||||| |||||||||||||||||||||
Sbjct 1793 TCTCTACGC-T-T-GACGTTG-AACATGAAACAAGATCGTTAAAAGAATCATCAGAAGAA 1848
Query 1840 AGTCCTAATAACGTTTCTACAGTTGGTTTTGATGAAAATCCTTCTGTATTTGACATCTCT 1899
||||||||||||||||||||||||| | |||| |||||| ||||||||||||| ||||||
Sbjct 1849 AGTCCTAATAACGTTTCTACAGTTGATATTGACGAAAATGCTTCTGTATTTGATATCTCT 1908
Query 1900 CGAGATCTAGATACAGAGATTGTCTCAACAAGCAAACAATT--A-GACGAAGTCCTCAAC 1956
|||||| |||||||||||| ||||||||||||||||||||| | || ||||||||||||
Sbjct 1909 CGAGATTTAGATACAGAGACTGTCTCAACAAGCAAACAATTAGATGAAGAAGTCCTCAAC 1968
Query 1957 ATAGATGCACAAGATAAAGTGAAATTCAACTATGTAAGAGACATTCTCGAGATCTCCGGT 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 ATAGATGCACAAGATAAAGTGAAATTCAACTATGTAAGAGACATTCTCGAGATCTCCGGT 2028
Query 2017 TTCAATGCACCAGAATCTCTCTCAATGTGGCAATTAGATTATCAGCCGTTAGATCCATTA 2076
||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 2029 TTCAATGCACCAGAATCTCTCTCAATGTGGCAATTAGATTACCAGCCACTGGATCCATTA 2088
Query 2077 GTCTACGAAGAAGTGACAAC-A-A-CAACAGGATGTATGTTCCAAGATCCAGAATGTTCA 2133
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 2089 GTCTACGAAGAAGTGACAACGACAACAACAGGATGTATGTTCCAAGATCCAGAATGTTCA 2148
Query 2134 AGAAACGAAGAAGAAGGCGGTAACTGCAACCATTTGCTTCTCTTCGATCTAATCAACGAG 2193
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2149 AGAAATGAAGAAGAAGGCGGTAACTGCAACCACTTGCTTCTTTTCGATCTAATCAACGAG 2208
Query 2194 GTACTAATCGAGATCTACGAAAGGTCTTACCATTATTGTCCCAAACCATTATCATCCCTA 2253
||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 2209 GTACTAATCGAAATCTACGAAAGGTCTTACCATTATTATCCTAAACCGTTATCATCCCTA 2268
Query 2254 TGTAAGATCCATCCAATGCCAGTGGGGTATAGTGTTTTGAAAGAGGTTTGGGTTAGAATA 2313
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2269 TGTAAGATCCATCCAATGCCGGTGGGGTATAGTGTTTTGAAAGAGGTTTGGGTTAGAATA 2328
Query 2314 AGCTGTTACTTGCGGTACAAGCCATACGACGAACAACAATCGTTTGATAAGATTATGAGT 2373
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2329 AGCTGTTACTTGCGTTACAAGCCATACGACGAACAACAATCGTTTGATAAGGTTATGAGT 2388
Query 2374 AGGGATTTGTCGAAAGACGATGGATGGATGGATTTGCAGTTCGAGAGTGAATGTGTTGGG 2433
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2389 AGGGATTTGTCGAGAGACGATGGATGGATGGATTTGCAGTTCGAGAGTGAATGTGTTGGG 2448
Query 2434 ATTGAAGTTGAGGATTTGATCTTCGAGGAGCTTCTAGAAGAATTGCTTGTATCAGGTTAA 2493
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 2449 ATTGAAGTTGAGGATTTGATCTTCGAGGAGCTTCTGGAAGAATTGCTTATATCATGTTAA 2508
Query 2494 TAGG 2497
||||
Sbjct 2509 TAGG 2512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123912349210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5