BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487020
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02440.1 | Symbols: | unknown protein; Has 71 Blast hits to... 837 0.0
> AT5G02440.1 | Symbols: | unknown protein; Has 71 Blast hits
to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:531028-532938 FORWARD LENGTH=782
Length=782
Score = 837 bits (453), Expect = 0.0
Identities = 610/679 (90%), Gaps = 38/679 (6%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCCCTTTGAGTCTCAAAACTTCAATGGCTCACCAGGAGGAAGGATGGCCATT 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 8 TCTCTCTCTCCCTTTGAGTCTCAAAGCTTCAATGGCTCACCAGGAGGAAGGATGGCCATT 67
Query 61 GGGTCTGAGGCCAGTAAATGCAAGAATCGGAGGACTCACAAGAGG--------AGC-TCA 111
||||||||| ||||||||||||||||||||||||||||||||||| | | |||
Sbjct 68 GGGTCTGAGACCAGTAAATGCAAGAATCGGAGGACTCACAAGAGGAACTCATCATCATCA 127
Query 112 TCATCATGAACAAGTCTCGGCTGGTTCAAtctccttcacctctc-tcttgtctccttctc 170
|||||||||||||||||| ||||||||||||||||||| ||||| || | ||||||||||
Sbjct 128 TCATCATGAACAAGTCTCTGCTGGTTCAATCTCCTTCAGCTCTCTTC-TCTCTCCTTCTC 186
Query 171 cctcatctcactcttcctccgatcttgattctcaGTCGATGGAATCATTTTTCCGCGATA 230
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 187 CCTCATCTCAATCTTCCTCCGATCTTGATTCTCAGTCGATGGGATCATTTTTCCGCGATA 246
Query 231 GGAGCTACACCCTAGGAAATCTAATCGGGATATCAAGCTTTCTTGAACTTTCAAGAAGAT 290
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 247 GGAGCTACACACTAGGAAACCTAATCGGGATATCAAGCTTTCTAGAACTTTCAAGAAGAT 306
Query 291 CAAACCGAACAAGGAATGATC-AA-A-GTACTGCTAGAAACCATCAACACCAGAAGAATC 347
||||||||||||||||||||| || | | |||||||||||||||||||||| |||||||
Sbjct 307 CAAACCGAACAAGGAATGATCAAACAGGCGCTGCTAGAAACCATCAACACCATAAGAATC 366
Query 348 TCAAAACTTACTACAAGCCATGGATTTTCTCTATATGTTCAAAGCTAAGCACAAATGCCA 407
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 367 TCAAAACTTACTACAAGCCATGGATTTTCTCTATATGTTCAAAACTAAGCACAAACGCCA 426
Query 408 CTGTCATTTCCCACAACAGGATTATAAACGAAGACAATGATGGTCGTAACAATGTGCAGT 467
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 427 CTGTCATTTCCCATAACAGGATTATAAACGAAGAAAATGATGGCCGTAACAATGTGCAGT 486
Query 468 CTCTTGGACACTTCCTCATGGTGGAGAGACGAGCCGTCGGATCAACCATACGGTCCACAC 527
||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||
Sbjct 487 CTCTTGGACACTTCCTCATTATGGAGAGACGAGCTGTGGGATCAACCATAAGGTCCACAC 546
Query 528 CGAC------------TATGTGAATGTTCGA-AAGTTAATAGCCAATTGTGCCTTAAAAG 574
|||| ||||||||||| ||| || ||| |||||||||||| |||
Sbjct 547 CGACACCGACACCGACTATGTGAATGTCCGATAATTTA-TAGCCAATTGTGTCTT----- 600
Query 575 TTAAAAAAGATAATGAGA-TGTGTAATATGATTTCCTAATGGTCTGACGCAACAGATTCT 633
| ||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 T-AAAC--GATAATG-GAATGTGTAATATGATTTCCTCATGGTCTGACGCAACAGATTCT 656
Query 634 GATTGTACTATTATTTTGT 652
||||||| | |||||||||
Sbjct 657 GATTGTATTTTTATTTTGT 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5