BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487022
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02460.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 2257 0.0
AT5G65590.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 158 2e-37
> AT5G02460.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr5:539249-541112 REVERSE LENGTH=1554
Length=1554
Score = 2257 bits (1222), Expect = 0.0
Identities = 1472/1584 (93%), Gaps = 52/1584 (3%)
Strand=Plus/Plus
Query 1 aaaaaaa-a-aaaaCTAAAGAGAGAAAATATCATCAAAGAAGAAAGATCGAAGATGGTTT 58
||||||| | |||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2 AAAAAAACAGAAAACTAAAGAGAGAAGATATCATCAAAGAAGAAAGATCAAAGATGGTTT 61
Query 59 TTACTTCATTTCCTACTTATCCTGATCATTCATCAAACTGGCAACAACAACATCAACCAA 118
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTTCTTCATTTCCTACTTATCCTGATCATTCATCAAACTGGCAACAACAACATCAACCAA 121
Query 119 TCACAACCACCGTTGGATTCACGGGAAACAACAACATCAACCAGCAGTTTCTTCCTCACC 178
||||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||
Sbjct 122 TCACAACCACCGTTGGATTCACGGG--A-AATAACATCAACCAACAGTTTCTTCCTCACC 178
Query 179 ACCCCCTCCCACCGCAACCGCAACCGCAACAAACGCCTCCGCAGCTTCACCACAACAACG 238
| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 179 ATCCCCTCCCACCGCAA---C-A--GCAACAAACGCCTCCGCAGCTTCACCACAACAACG 232
Query 239 GTAACGGTGGAGGCAG-TGGTCCCGGTGGACCTGGCGTGTTAATCCGTCCAGGTTCGATG 297
||||||| |||| | | || ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 233 GTAACGGCGGAGTC-GCTGTTCCCGGTGGACCTGGCGGGTTAATCCGACCAGGTTCGATG 291
Query 298 GCGGAAAGGGCAAGGCTAGCCAACATACCACTGCCTGAAACAGCCTTGAAGTGTCCAAGA 357
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 292 GCGGAAAGAGCAAGGCTAGCCAACATACCATTACCTGAAACAGCCTTGAAGTGTCCAAGA 351
Query 358 TGTGACTCAACCAACACCAAATTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGC 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TGTGACTCAACTAACACCAAATTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGC 411
Query 418 CACTTTTGCAAAGCATGCCGTCGTTACTGGACACGTGGCGGTGCTCTAAGGAGCGTTCCC 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CACTTCTGCAAAGCATGCCGTCGTTACTGGACACGTGGCGGTGCTCTAAGGAGCGTTCCC 471
Query 478 GTCGGTGGTGGTTGCCGTAGAAACAAAAGAACCAAAAACAGCAGCGGTGGAGGTGGCGGT 537
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 472 GTCGGTGGCGGTTGCCGTAGAAACAAAAGAACCAAAAACAGCAGCGGTGGA------GGT 525
Query 538 GGCGGTAGCACCAGTAGCGGTAACAGCAAGTCACAAGACAGCGCCACGAGCAACGACCAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GGCGGTAGCACCAGTAGCGGTAACAGCAAGTCACAAGACAGCGCCACGAGCAACGACCAA 585
Query 598 TACCACCACCGAGCCATGGCTAACAATCAGATGGGACCACCGTCTTCTTCATCTTCTTTG 657
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
Sbjct 586 TACCACCACCGAGCCATGGCTAACAATCAGATGGGACCACCTTCTTCGTCATCGTCTCTA 645
Query 658 AGCTCGTTGCTGTCTTCTTACAACGCAGGATTAATCCCCGGACATGATCATaacaacaac 717
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 646 AGCTCGTTGCTGTCTTCTTACAACGCAGGGTTAATCCCCGGACATGATCATAACAGCAA- 704
Query 718 aataacaacaacaacaTACTTGGACTTGGATCATCTTTGCCTCCTCTCAAGCTCATGCCT 777
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 705 --TAACAACAACA---TACTTGGACTTGGATCATCTTTGCCTCCTCTTAAGCTTATGCCT 759
Query 778 CCTATAGACTTCACTGACAACTTTACCTTACAATACGGTGCCGTTTCAGCTCCTTCTTAT 837
||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 760 CCTTTAGACTTCACAGACAACTTCACCTTACAATACGGTGCCGTTTCAGCTCCTTCTTAT 819
Query 838 CATATAGGCGGTGGAAGCAGCGGAGGAGCGCCGGCTCTTTTGACCGGTTTTGACCAGTGG 897
|||||||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||
Sbjct 820 CATATAGGCGGTGGAAGCAGTGGAGGAGCGGCGGCTCTTTTAAACGGTTTTGACCAGTGG 879
Query 898 AGATTCCCGGCAACAAACCAACTTCCTTTAGGTGGTTTAGACCCGTTTGATCATCAA-AT 956
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 880 AGATTCCCGGCAACAAACCAACTTCCTTTAGGCGGTTTAGACCCGTTTGATCAACAACAT 939
Query 957 -A---G-AGCAACAGAATCCGGGTTACGGATTAGTTACCGGGTCGGGTCAGTACCGACCT 1011
| | |||| |||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 940 CAAATGGAGCAGCAGAATCCAGGTTACGGATTGGTTACCGGGTCGGGTCAGTATCGACCT 999
Query 1012 AAGAACATTTTCCATAACCTTATTTCCTCTTCTTC-T--GCTTCGTCAGCTATGGTTACA 1068
||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||
Sbjct 1000 AAGAACATTTTCCATAACCTTATCTCCTCTTCTTCGTCTGCTTCATCAGCTATGGTTACA 1059
Query 1069 GCCACCGCGTCGCAATTAGCTTCGGTGAAAATGGAAGATAGTAACAATCAGCTCAACTTG 1128
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1060 GCCACCGCGTCGCAATTAGCTTCAGTGAAAATGGAAGATAGTAACAATCAGCTCAACTTG 1119
Query 1129 TCTCGACAACTTTTTGGAAACGAACAACAGCTCTGGAATATTCATGGCGCTGCTGCAGCA 1188
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TCTAGACAACTTTTTGGAGACGAACAACAGCTCTGGAATATTCATGGCGCTGCTGCAGCA 1179
Query 1189 TCCACCGCAGCCGCAACAAGTTCGTGGAGTGACGTCTCTAATAATTTCAGTTCTTCTTCT 1248
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1180 TCCACCGCAGCTGCAACAAGTTCGTGGAGTGAAGTCTCTAATAATTTCAGTTCTTCTTCT 1239
Query 1249 ACTAGCAATATCTAATCAATCATCTCTCTAAG-GAATC--TATATGTGATGATT-A-TGA 1303
||||||||||| ||| |||||||||||||||| || || ||||||||||||| | | |
Sbjct 1240 ACTAGCAATATATAAACAATCATCTCTCTAAGTGA-TCAATATATGTGATGATGCAATTA 1298
Query 1304 TGCTTTTATTAATTTCTTATTGGGTGTGGTATGATCTTATGTACTTAGTTTGAAGTTAGT 1363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TGCTTTTATTAGTTTCTTATTGGGTGTGGTATGATCTTATGTACTTAGTTTGAAGTTAGT 1358
Query 1364 ACATCGATCGATCTATATACTAGgtttctattttttctattacattttcgttactagttt 1423
||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||
Sbjct 1359 ACATCGATCGATCTATA--CTAGGTTTTTGTTTTTTCTATTAAATTTTCGTTACTAGTTT 1416
Query 1424 tggttttttttttttggatttt-taggtttaaaattagggtttttt--ctattgca-aat 1479
||| |||| ||||||||||||| || || |||||||||||||||| || ||||| |||
Sbjct 1417 TGGGTTTTCTTTTTTGGATTTTCTA--TT-AAAATTAGGGTTTTTTTTCTGTTGCAGAAT 1473
Query 1480 ttatttttcattttttaGTATGACGGTATGATGATCATACATGCGTGTAATGTGTTCTAT 1539
||||||||||||||| ||||||| | || || |||||||||||||||||||||||||||
Sbjct 1474 TTATTTTTCATTTTTCAGTATGAAG--AT-ATCATCATACATGCGTGTAATGTGTTCTAT 1530
Query 1540 TATATAACATATTTTTATTTATTC 1563
||||||||||||||||||||||||
Sbjct 1531 TATATAACATATTTTTATTTATTC 1554
> AT5G65590.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr5:26211746-26213136 REVERSE LENGTH=1391
Length=1391
Score = 158 bits (85), Expect = 2e-37
Identities = 121/138 (88%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 370 AACACCAAA-TTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAA 428
|||| |||| |||||||||| |||||||||||||||| |||||||||| ||||| |||||
Sbjct 250 AACA-CAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAACCTCGTCACTTCTGCAA 308
Query 429 AGCATGCCGTCGTTACTGGACACGTGGCGGTGCTCTAAGGAGCGTTCCCGTCGGTGGTGG 488
| | || || ||||||||||||||||||||||||||||| | ||| ||| ||||||||||
Sbjct 309 ATCTTGTCGCCGTTACTGGACACGTGGCGGTGCTCTAAGAAACGTCCCCATCGGTGGTGG 368
Query 489 TTGCCGTAGAAAC-AAAA 505
|||||| | |||| ||||
Sbjct 369 TTGCCGGA-AAACCAAAA 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5