BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487025
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02470.1 | Symbols: DPA | Transcription factor DP | chr5:542... 1705 0.0
> AT5G02470.1 | Symbols: DPA | Transcription factor DP | chr5:542358-544900
REVERSE LENGTH=1146
Length=1146
Score = 1705 bits (923), Expect = 0.0
Identities = 1010/1051 (96%), Gaps = 9/1051 (1%)
Strand=Plus/Plus
Query 110 ATGAGTATGGAGATGGATTTGTTTGCCACTCCAGAGAAGCAGAGACAACATCCTTCTGTG 169
||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 64 ATGAGTATGGAGATGGAGTTGTTTGTCACTCCAGAGAAGCAGAGGCAACATCCTTCAGTG 123
Query 170 AGC-TTGGAGAAAACTCCAGTGAGAAGGAAATTGATAGTTGATGATGATTCTGAAATTGG 228
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 124 AGCGTT-GAGAAAACTCCAGTGAGAAGGAAATTGATTGTTGATGATGATTCTGAAATTGG 182
Query 229 ATCAGAGAAGAAAGGGCAATCGAGAACTTCTGGAGGTGGGCTTCGTCAATTCAGTGTTAT 288
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 183 ATCAGAGAAGAAAGGGCAATCAAGAACTTCTGGAGGCGGGCTTCGTCAATTCAGTGTTAT 242
Query 289 GGTTTGTCAGAAGTTGGAAGCCAAGAAGATAACTACTTACAAGGAGGTTGCAGACGAGAT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 243 GGTTTGTCAGAAGTTGGAAGCCAAGAAGATAACTACTTACAAGGAGGTTGCAGACGAAAT 302
Query 349 CATTTCAGATTTTGCCACAATTAAGCAAAACGCAGAGAAGCCTTTGAATGAAAATGAGTA 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TATTTCAGATTTTGCCACAATTAAGCAAAACGCAGAGAAGCCTTTGAATGAAAATGAGTA 362
Query 409 CAATGAGAAGAACATAAGGCGGAGAGTCTATGATGCGCTCAATGTGTTCATGGCCTTGGA 468
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 363 CAATGAGAAGAACATAAGGCGGAGAGTCTACGATGCGCTCAATGTGTTCATGGCGTTGGA 422
Query 469 TATTATCGCAAGGGATAAAAAGGAAATCCGGTGGAAAGGACTTCCTATTACATGCAAAAA 528
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 423 TATTATTGCAAGGGATAAAAAGGAAATCCGGTGGAAAGGACTTCCTATTACCTGCAAAAA 482
Query 529 GGATGTGGAAGAAGTCAAGATGGATCGTAATAAAGTTATGAGCAGTGTGCAAAAGAAGGC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGATGTGGAAGAAGTCAAGATGGATCGTAATAAAGTTATGAGCAGTGTGCAAAAGAAGGC 542
Query 589 TGCTTTTCTTAAAGAGTTGAGAGAAAAGGTCTCAAGTCTTGAGAGTCTTATGTCGAGAAA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGCTTTTCTTAAAGAGTTGAGAGAAAAGGTCTCAAGTCTTGAGAGTCTTATGTCGAGAAA 602
Query 649 TCAGGAGATGGTTGTGAAGACTCAAGGCCCAGCAGAAGGATTTACCTTACCGTTCATTCT 708
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 603 TCAAGAGATGGTTGTGAAGACTCAAGGCCCAGCAGAAGGATTTACCTTACCATTCATTCT 662
Query 709 ACTTGAGACAAATCCTCACGCAGTAGTCGAAATCGAGATTTCTGAAGATATGCAACTTGT 768
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ACTTGAGACAAACCCTCACGCAGTAGTCGAAATCGAGATTTCTGAAGATATGCAACTTGT 722
Query 769 ACACCTCGACTTCAATAGCACACCTTTCTCGGTCCATGACGATGCTTACATTTTGAAACT 828
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 723 ACACCTCGACTTCAATAGCACACCTTTCTCGGTCCATGATGATGCTTACATTTTGAAACT 782
Query 829 GATGCAAGAACAGAAGCAACAACAAAACAGAGTATCTTCTTCTTCCTCTACACATCACCA 888
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 783 GATGCAAGAACAGAAGCAAGAACAGAACAGAGTATCTTCTTCTTCATCTACACATCACCA 842
Query 889 ATCTCAACATAGCTCAGCTCATTCTTCCTCCAGTTCTTGCATTGCTTCTGGAACCTCAGG 948
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 843 ATCTCAACATAGCTCCGCTCATTCTTCATCCAGTTCTTGCATTGCTTCTGGAACCTCAGG 902
Query 949 CCCGGTTTGCTGGAACTCGGGATCCATTGATACTCGCTGACCAAGAG-CTATTCCCAAAT 1007
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 903 CCCGGTTTGCTGGAACTCGGGATCCATTGATACTCGCTGACCGAGCTTCTATTCCCAAAT 962
Query 1008 TCTTCAAGAAGA-GCAAGTGATGATCTAATTGGTATACTATAAAATTATACATCTGGTTT 1066
|||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 963 TCTTCAAGAAGAAG-AAGTAATGATCTAATTGGTATACTAAAAAATTATACATCTGGTTT 1021
Query 1067 AATGTTCAACTGGGAGAGACTGTAAAATGACAATTCATAGGCCAACAAAAATGTTTGTTT 1126
| ||||||| || ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1022 AGTGTTCAATTGAGAGAGACTGTAAAAT--CAATTCATAGGCCAACAAA--TGTTTGTTT 1077
Query 1127 ATCCAATTTTCCTTTTTATTGGAACTTCATG 1157
|||||||||||||||||||| |||||| |||
Sbjct 1078 ATCCAATTTTCCTTTTTATTCGAACTTGATG 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5