BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487031
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1620 0.0
> AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564085-565863 REVERSE LENGTH=1213
Length=1213
Score = 1620 bits (877), Expect = 0.0
Identities = 1071/1159 (92%), Gaps = 36/1159 (3%)
Strand=Plus/Plus
Query 1 TTTCAAATCTCACAGCAACAAAACCCTAGATACTTGCTCTTCTCGATATCGGAGAAGAAG 60
||| |||||||| |||||||||||||||| ||| | ||||||||||||||||| |||
Sbjct 22 TTTGAAATCTCAGAGCAACAAAACCCTAGCTAC---AT-TTCTCGATATCGGAGAA-AAG 76
Query 61 ATCCGGCGAAGATGTCAGGTGGCTTGGATATGTCACTTGATGATATCATCAAATCTAACC 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 77 ATCCGGCGAAGATGTCAGGTGGCTTAGATATGTCACTTGATGATATCATCAAATCTAATC 136
Query 121 GTAAACCTACTGGATCTCGCGGCCGAGGAGGCATTGGTGGTGGTAATAACACCGGTGGTC 180
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 137 GAAAACCTACTGGATCTCGCGGCCGAGGAGGCATTGGAGGTGGCAATAACACCGGTGGTC 196
Query 181 GCGGCGGTTCCGGTTCTAATTCCGGTCCGGCTCGTCGATTTGCTAACCGCGTAGGAGCCA 240
|||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 197 GCGGTGGTTCCGGTTCTAATTCCGGTCCGTCTCGTCGGTTTGCTAACCGCGTAGGAGCCA 256
Query 241 GAACGGCGCCGTATTCAAGGCCGATT---CAACAACAAGCTCATGATGCGATGTGGCAAA 297
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 257 GAACGGCGCCGTATTCAAGGCCGATTCAACAACAACAAGCTCATGATGCGATGTGGCAAA 316
Query 298 ACGATGTTTTTGCGACTGACGCGTCTGTGGCGGCGGCTTTTGGGCATCATCAGACTGCTG 357
|||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 317 ACGACGTCTTCGCGACTGATGCGTCTGTGGCGGCGGCTTTTGGGCATCATCAGACTGCTG 376
Query 358 TTGTTGGTGGTGGCTCTTCTATCGAGACTGGAACTAAGCTCTACATTTCCAACTTAGATT 417
|||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 377 TTGTTGGTGGTGGCTCGTCTATCGAGACTGGAACTAAGCTTTACATTTCAAACTTAGACT 436
Query 418 ATGGTGTCTCAAACGAAGATATCAAGGAGCTTTTCTCTGAAGTTGGTGACCTTAAGCGGT 477
|||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 437 ATGGTGTCTCCAACGAAGATATCAAGGAGCTTTTCTCTGAGGTTGGTGATCTTAAGCGAT 496
Query 478 ATGGGATTCACTATGATAGGAGTGGAAGATCAAAGGGTACTGCTGAAGTTGTTTTTTCGA 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 497 ATGGGATTCACTATGATAGGAGTGGAAGATCAAAGGGGACTGCTGAAGTTGTTTTCTCGA 556
Query 538 GGCGTGGTGATGCCTTGGCAGCTGTCAAGCGTTACAACAATGTTCAATTGGATGGAAAAC 597
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 557 GGCGTGGGGATGCATTGGCAGCTGTCAAGCGTTACAACAATGTTCAGTTGGATGGAAAAC 616
Query 598 TGATGAAGATAGAGATTGTTGGAACTAATCTTTCTGCTCCAACTCTTCCCCTTCCTGCTC 657
|||||||||||||||||||||| |||||||||||||||||| |||||||| ||| ||||
Sbjct 617 TGATGAAGATAGAGATTGTTGGGACTAATCTTTCTGCTCCAGCTCTTCCCATTCTTGCTA 676
Query 658 CAGCTCAGTTTTCTTTTCCTACTAATGGGATACTTGGGAACTTTAATGAGAACTTTAACG 717
|||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 677 CAGCTCAGATTCCTTTTCCTACTAATGGGATACTTGGCAACTTTAATGAGAACTTTAATG 736
Query 718 GCAATTTCAATGGGAACTTCAATGGAAACTTCAGAGGCAGAGGAAGAGGTGGTTTTATGG 777
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 737 GCAATTTCAATGGCAACTTCAATGGAAACTTCAGAGGCAGAGGAAGAGGCGGTTTTATGG 796
Query 778 GGCGTCCTC---GTGGTGGTTTTGGGGGTGGTAATTTCCGAGGAGGTAGGGGAGCTAGAG 834
||||||||| ||||||||||||| |||||||||||| |||| || |||||||||||||
Sbjct 797 GGCGTCCTCGTGGTGGTGGTTTTGGCGGTGGTAATTTCAGAGGTGGCAGGGGAGCTAGAG 856
Query 835 GACGTGGTGGTCGTGGCGGTGGTGGAAGAGGACGTGATGAAAACGTATCTGCAGAGGATC 894
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GACGTGGTGGTCGTGGCAGTGGTGGAAGAGGACGTGATGAAAACGTATCTGCAGAGGATC 916
Query 895 TTGATGCTGAATTGGACAAGTACCACAAAGAGGCAATGGAAACAAGTTAGAAAGGGCAGA 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 917 TTGATGCTGAATTGGACAAGTACCACAAAGAGGCAATGGAAACAAGTTAGAAAGGGGAGA 976
Query 955 CAAAACCTATTGCATGCCTACATGTATTCCTTTCTTTAGTGCACGATATGCTTTTGTATT 1014
|||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 977 TTAAACCTATTGCATGTCTACATGTATTCCTTCCTTTAGTGC-CGATATGCTTTTGTATT 1035
Query 1015 AGTATGATCTTTAGATTGA-TGTCAATGGGTCTGAC-TTTT-----TT---CTT------ 1058
||||||||||||||||||| |||||||||||||||| |||| || |||
Sbjct 1036 AGTATGATCTTTAGATTGAATGTCAATGGGTCTGACATTTTCGAGCTTTAGCTTTTGTTT 1095
Query 1059 ---CT-CTAT-G-TGAGCTTTTTAGCTTTT-GCAGTTGAGTTCAGAGAAACA-GCATTGT 1110
|| || | | ||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 1096 TTTCTTCTCTTGGTGAGCTTCTTAGCTTTTTGCAGTTGAGTTCAGAGAAACAAGCATTGT 1155
Query 1111 GTGTACCGTGGAACTCAAA 1129
|||||||||||||||||||
Sbjct 1156 GTGTACCGTGGAACTCAAA 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5