BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487032
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02540.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1901 0.0
> AT5G02540.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:568524-570920 FORWARD LENGTH=1281
Length=1281
Score = 1901 bits (1029), Expect = 0.0
Identities = 1150/1207 (95%), Gaps = 13/1207 (1%)
Strand=Plus/Plus
Query 3 AGGTTAATCTAATAAAAATGGGATTATATTCACTAATCACAGGAAGAAGAGGACCAAGTG 62
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 AGGTCAATCTATTAAAAATGGGATTATATTCACTAATCACAGGAAGAAGAGGACCAAGTG 128
Query 63 GATTTGGTTCAGCTTCAACAGCTGAAGAGGTTACTCTAGGGATTGATGCAACTAATCTCA 122
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 129 GATTTGGTTCAGCTTCAACAGCTGAAGAGGTTACTCAAGGGATTGATGCAACTAATCTCA 188
Query 123 CTGCAATCATCACAGGAGGGACAGGAGGAATAGGTATGGAGACAGCGAGAGTGCTGTCGA 182
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 189 CTGCAATTATCACAGGAGGGACAGGAGGAATAGGGATGGAGACAGCGAGAGTGCTGTCGA 248
Query 183 AGAGAGGTGTTCATGTGGTGATCGGTGCCCGAAACATGGGAGCTGCAGAAAACGCCAAAA 242
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AGAGAGGTGCTCATGTGGTGATCGGTGCCCGAAACATGGGAGCTGCAGAAAACGCCAAAA 308
Query 243 CTGAGATTCTCAGACAAAACGCAAACGCACGTGTCACTCTTCTTCACTTAGATCTCTCTT 302
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 309 CAGAGATTCTCAGACAAAACGCAAACGCACGTGTCACTCTTCTTCAATTAGATCTCTCTT 368
Query 303 CCTTCAAATCCATCAAAGCCTTTGCTCGTGAATTTCATGCCCTCCATCTTCCTCTCAATC 362
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 369 CCATCAAATCCATCAAAGCCTTTGTTCGTGAATTTCATGCCCTCCATCTTCCTCTCAATC 428
Query 363 TCCTCATAAACAATGCAGGAGTAATGTTCTGTCCATACCAACTCTCTGAAGATGGAATCG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TCCTCATAAACAATGCAGGAGTAATGTTCTGTCCATACCAACTCTCTGAAGATGGAATCG 488
Query 423 AATTGCAGTTTGCTACAAATCACATTGGTCATTTTCTGTTGACAAACTTGCTGTTGGACA 482
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 489 AATTGCAGTTTGCTACAAATCACATTGGTCACTTTCTGTTGACAAACTTGCTCTTGGACA 548
Query 483 CAATGAAGAACACAGCTAAAAGCAGTGGTGTTGAAGGAAGGATTTTGAATGTATCATCTG 542
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 549 CAATGAAGAACACAGCTAAAACCAGTGGTGTTGAAGGAAGAATTTTGAATGTATCATCTG 608
Query 543 TGGCTCATATCTATACTTACCAAGAAGGAATCCAATTCGACAGCATCAATGACATTTGCA 602
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TAGCTCATATCTATACTTACCAAGAAGGAATCCAATTCGACAGCATCAATGACATTTGCA 668
Query 603 GTTACTCGGATAAACGAGCTTACGGACAATCCAAACTAGCCAATATATTGCATGCTAACG 662
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 669 GTTACTCGGATAAGCGAGCTTACGGACAATCGAAACTAGCCAATATATTGCATGCTAATG 728
Query 663 AGCTCTCCCGTCAACTTCAGGAAGAGGGAGTAAACATAACAGCAAATTCAGTTCACCCTG 722
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 729 AGCTCTCCCGTCAGCTTCAGGAAGAAGGAGTAAACATAACAGCAAATTCAGTTCACCCTG 788
Query 723 GTCTCATCCTCACTAATCTCTTCCAACACACTGCTCTTTTAATGAGGTTCTTGAAGTTAT 782
|||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 789 GTCTTATTCTCACCAATCTCTTCCAACACACTGCTCTTTTAATGAGGTTCCTGAAGTTCT 848
Query 783 TCAGCTTCTACTTATGGAAAAATATACCTCAGGGAGCAGCTACAACATGTTATGTTGCTC 842
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 849 TCAGCTTCTACTTGTGGAAAAATATACCTCAGGGAGCAGCAACAACATGTTATGTTGCTC 908
Query 843 TGCATCCAAGTGTGAAGGGCGTAACAGGAAAGTACTTTGCTGATTGCAACGAAGTCACTC 902
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TGCATCCAAGTGTGAAGGGAGTAACAGGAAAGTACTTTGCTGATTGCAACGAAGTCACTC 968
Query 903 CAAGCAAACTTGCTAGAGATGAGACTTTGGCGCAGAAACCCTGGGATTTCAGTGTTAAGC 962
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 969 CAAGCAAACTTGCTAGAGATGAGACTTTGGCACAGAAACTCTGGGATTTCAGTGTTAAGC 1028
Query 963 TCATTAACTCGGTTTCTAAAAAGAACTACCTCGGTTTCGGTGACACCACTTAAATCTCTA 1022
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1029 TCATTAACTCGGTTTCTAAAAAGAACTACCTCGGTTTCGATGACACCACTTGAATCTCTA 1088
Query 1023 AGGTGTTGTTGTTGTTTGTTACCTACCTAAGAGTGAAAACAAAAGTAATGTCAGAAGAAA 1082
|||||| |||||| ||||||||| ||||||||||| |||||||| | | |||
Sbjct 1089 CGGTGTTCTTGTTGAATGTTACCTA---AAGAGTGAAAA-AAAAGTAA-GA-ACAAG--- 1139
Query 1083 TAGAGAGTGTGATGTTTCTTTCCACCTTATCATATGGTAACT-A-GAG--GCATTGTTAT 1138
|||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| |
Sbjct 1140 TAGAGATTGTGATGTTTCTTTCCACATTATCGTATGGTAACTCATGAGATGCATTGTTGT 1199
Query 1139 ATGCTTAAATATTTTATCGAGTGAATATGTAACCGCGTCAATCATTTCATAGTATGGACA 1198
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 ATGCTTAAATATTTTATCGAGTGAATATGTAACCGCGTCAATCTTTTCATAGTATGGACA 1259
Query 1199 ATACAAA 1205
||| |||
Sbjct 1260 ATAAAAA 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5