BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487033
Length=449
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02550.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 547 3e-155
> AT5G02550.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:573054-573558 REVERSE LENGTH=505
Length=505
Score = 547 bits (296), Expect = 3e-155
Identities = 428/484 (88%), Gaps = 40/484 (8%)
Strand=Plus/Plus
Query 1 CACACAACAATCTCTCTATTCTTA--TCTC---TCT-T-TTCCCAATCCTTTTTGTCTGA 53
||||||||||||||||| |||||| |||| ||| | |||||||||||| ||||||||
Sbjct 8 CACACAACAATCTCTCTCTTCTTATCTCTCTTTTCTCTCTTCCCAATCCTTGTTGTCTGA 67
Query 54 ATCTGTAGCTAACCATGTCGGAGAGACCAAGCCGTCACCAGAGAAGACCTTCTCAGAGCG 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 ATCTGTAGCTAACCATGTCGGAGAGACCAAGCCGTCACCAGAGAAGACCTTCTCAGAGCG 127
Query 114 TTTTTCCGATCTCCCTTGACGATCTCTCCGATATCTCTCTCGCAGCAAATCCTCCCTCCT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 128 TTTTTCCGATCTCCCTTGACGATCTCTCCGATATCTCTCTCGCAGCAAATCCTCCTTCCA 187
Query 174 CCGTTCCTACTAACCCGCCGCGCCACCAGATCCCTCTGCCGTCTCCGGCAGCTCCTCCGG 233
||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||
Sbjct 188 CCGTTCCTACTAACCCGCCACGTCACCAGATCCCTCCGCCGTCTCCTGCAGCTCCTCCGG 247
Query 234 -TAAACCGTAGCAACAATGACGACAATGTTAGCAAGGATCACAAAGGGAACGCCTCTTCT 292
||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 248 CTAA-CCGTAGCAACAATGACGACAATGTTAGCAAAGATCACCATGGGAACGCCTCTTCT 306
Query 293 AATTAAT-T---TTT-----------------AATATAAGTTTCAGCCTTTTAATTATCG 331
||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 307 AATTAATATCGCTTTTTTTTGTCTTTGGTTTTAATATAAGTTTCAGCCTTTTAATTATCG 366
Query 332 CATAAGCCT--CTTTTCTCTTAATAATCAGATTTTGTCTTTCTTTACTCGTGTATGATAA 389
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 367 CATAAGCCTTTCTTTTCTCTTAATAATCAGATTTTGTCTTTCTTTACTATTGTATGATAA 426
Query 390 ----ATGAATCAATCGTAATTTCGTATTTCGGGTTTATGGTATTGACTATTGAATGAAGA 445
|||||||||||||| |||||||||||||||||||||| | |||||||||| ||
Sbjct 427 TCCCATGAATCAATCGTAGTTTCGTATTTCGGGTTTATGGTG--G--TATTGAATGATGA 482
Query 446 ATAA 449
||||
Sbjct 483 ATAA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21363793325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5