BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487036

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02580.1 | Symbols:  | Plant protein 1589 of unknown functio...   761    0.0  


> AT5G02580.1 | Symbols:  | Plant protein 1589 of unknown function 
| chr5:579852-580787 FORWARD LENGTH=722
Length=722

 Score =  761 bits (412),  Expect = 0.0
 Identities = 528/578 (91%), Gaps = 31/578 (5%)
 Strand=Plus/Plus

Query  1    TGTAGCGTTTTATATATATTTTCACCTGCctctcttctcccatccatcatc--atctctc  58
            ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||
Sbjct  8    TGTAGCGTTTTATATATATTTTCACCTGCCTTTCTTCTCCCATCCATCATCATATCTCTC  67

Query  59   tctaatttctct-cg----------a-tactctttaatca-ttttcatATGGGTGATCAT  105
            |||||||||||| ||          | ||||||||||| | | ||  |||||||||||||
Sbjct  68   TCTAATTTCTCTCCGTATAACACAAACTACTCTTTAATAAGTATT--TATGGGTGATCAT  125

Query  106  AATAGCTCACAAGCATCTTACATCCATTTGGTGCATCATTTGATAGAAGAATGTATAATA  165
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  126  AATAGCTCGCAAGCTTCTTACATCCATTTGGTGCATCATTTGATAGAAGAATGTATAGTA  185

Query  166  TTCAACATGGGCAAAGAAGAGTGTATGGATGCTCTGTTCAAGCATGCTAATATCAAGCCC  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  186  TTCAACATGGGCAAAGAAGAGTGTATGGATGCTCTGTTCAAGCATGCTAATATTAAGCCT  245

Query  226  ATCATCACTTCCACAGTGTGGAAGGAGCTAGAGAAAGAGAACAAAGAGTTCTTCGAGGCA  285
            ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct  246  ATCATCACTTCCACAGTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCA  305

Query  286  TACGAGAGAAGACGAGAAGAAATACCGACCGAGAAAGAGACAGCTCGAAGAATCCGAGAT  345
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  306  TACGAGAGAAGACGAGAAGAAATACCGACCGAGAAAGAGACAGCTCGAAGAATCCGTGAT  365

Query  346  TTGCTTTCACGAACTACAATCTAAGATCATGACACCTACTTTTACTTACATATACATACA  405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  366  TTGCTTTCACGAACTACAATCTAAGATCATGACACCTACTTTTACTTACATATACATACA  425

Query  406  CTCATCTATATTACTATAGGCATGTGTGAGTGTGTATATGTATGATCCGA---TTCTATA  462
            |||||||||||||| |||||||||||||  |||  |||||||||||||||   |||||||
Sbjct  426  CTCATCTATATTACCATAGGCATGTGTG--TGT--ATATGTATGATCCGACGATTCTATA  481

Query  463  TAGACTCTTTAATTAGACAATATGTATTATAACCTTCATTAGGAAATGAATAATTCACCT  522
            || ||||||||    |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  482  TATACTCTTTA----GACAATTTGTATTATAATCTTCATTAGGAAATGAATAATTCACCT  537

Query  523  TTGAGAAAATCTTTTCGTTTTCAGCTTAATTTAAAATC  560
            ||| | |||||| ||  ||| ||||||| |||||||||
Sbjct  538  TTGGGGAAATCTCTT--TTT-CAGCTTAGTTTAAAATC  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26875268645


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5