BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487037
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1447 0.0
> AT5G02590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:583086-584179 FORWARD LENGTH=1094
Length=1094
Score = 1447 bits (783), Expect = 0.0
Identities = 941/1014 (93%), Gaps = 23/1014 (2%)
Strand=Plus/Plus
Query 1 ATCGCCGGCGTTAGGGttttttttCTCAACAATGGCGTCTCTTGCCAAGTTTCACTACTG 60
|||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 1 ATCGCCGGCGTTAGGGTTGTTTTTCTCAACAATGGTGTCTCTGGCCAAGTTTCACTACTG 60
Query 61 TGACCAAACACTTCACCTCCGACTCGATACTCACCGTAAACCCCAGCCTAAACCTGTTTC 120
||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 61 TGATCAAACACTCCACCTCCGACTCGACACTCACCGTAAACCGCAGCCTAAACCTGTTTC 120
Query 121 ATACCGAATCTTACAAAAACCTCCTCCGTCTCGCGCCATCAGAGCTTCTTCGTCTtcatc 180
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 121 ATACCGAATCTTACATAAACCTCCTCCTTCTCGCGTCATCAGAGCTTCTTCG-------- 172
Query 181 atcatcatcatcatcaAACCCTAAACCATCTTTCTTCAAAACCACCTGCGTAACCCTAAC 240
| | | ||||||||||||||||| |||||| |||||||||||||||| ||| ||||
Sbjct 173 -T--T--T--TCATCAAACCCTAAACCCTCTTTCCTCAAAACCACCTGCGTGACCTTAAC 225
Query 241 AACAGCCGCCGCTTTATTCTCCGCTTCCCTTCACCTCGCTACCAAACCCGCCACCGCAGC 300
|||||||||||||||| ||||||||||||| |||||| | |||||||||| |||||||||
Sbjct 226 AACAGCCGCCGCTTTACTCTCCGCTTCCCTCCACCTCTCCACCAAACCCGTCACCGCAGC 285
Query 301 AACTCTCGTCTCACCTCCTCCTCCACCATCCACGACGGCGGATCTCAC-T--GATCAAAT 357
|||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 286 AACTCTCGTCTCACCTCCTCCTCCACCATCCACGGCGGCGGATCTCACTTCCGATCAAAT 345
Query 358 CTCGTCGCGTCAAAAGGAAGAAGAAGAAGAAGCAGCGCTGGAGAAACATCTCACTAAGAA 417
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 346 CTCGTCGCGTCCAAAGGAAGAAGAAGAAGAAGCAGCGCTGGAGAAGCACCTCACTAAGAA 405
Query 418 TCCAAACGACGTCGAAGCTCTTCAGTCTCTAATGAAAATCAAATTCCAAACCAAAAACCT 477
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
Sbjct 406 TCCAAACGACGTCGAAGCTCTTCAATCACTGATGAAAATCAAATTCCAAACCAAAAACAT 465
Query 478 CGACCACGCGTTAGAGATTCTAAACCGTTTGATCGAAATCGAACCCGAAGAACAAGAATG 537
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 466 CGACCACGCCTTAGAGATTCTAAACCGTTTGATCGAAATCCAACCCGAAGAACAAGAATG 525
Query 538 GCGGATCTTAAAAGCTCAGGTACAAACTTACGGCGGCGATTTCGAATCAGCAACGAAAGG 597
||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 526 GCGGATCCTAAAAGCTCAGGTACAAACCTACGGCGGCGATTTCGATTCAGCGACGAAAGG 585
Query 598 ATTCGAAGAGATTCTAGCTAAAGATCCGTTTCGTGTCGAAGCTTATCACGGATTAGTAAT 657
|||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 586 ATTCGAAGAGGTTCTATCTAAAGATCCATTTCGTGTAGAAGCTTATCACGGATTAGTAAT 645
Query 658 GGCTTACTCTGAATCCGAATC-AAAGTTATCAGAGATCGAGAGTAGAATCAACGAAGCGA 716
||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 646 GGCTTACTCCGAATCCGAATCGAAA-TTATCAGAGATCGAGAGTAGAATCAACGAAGCGA 704
Query 717 TTGAGAAATGCAAGAAGGAGAACAAGAAGAAAGATTTCAGAGATTTCATGTTGTTGATTG 776
|||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 705 TTGAGAAATGCAAGAAGGAGAACAAGAA-A--GATTTTAGAGATTTCATGTTGTTGATTG 761
Query 777 CACAGATTAGGGTTATAAAAGGTAATCCAATTGAAGCACTTAGGGTTTATCAAGAATTGG 836
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 762 CTCAGATTAGGGTTATCAAAGGTAATCCAATTGAAGCACTTAGGGTTTATCAAGAGTTGG 821
Query 837 TGAAAGATGAGCCTAAAGATTTTAGGCCATACCTATGTCAAGGTTTGATTTATACATTGA 896
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 822 TGAAAGATGAGCCTAAAGACTTTAGACCATATCTATGTCAAGGTTTGATTTATACATTGA 881
Query 897 TGAAGAAGAAAGATGAAGCAGAGAAGCAATTTGAAGAGTTTAGAAGATTGGTTCCTGAGA 956
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 882 TGAAGAAGAAAGATGAAGCAGAGAAGCAATTTGCAGAGTTTAGAAGATTGGTTCCTGAGA 941
Query 957 ATCATCCTTATAAAGACTATTTTGATGCTAATGTCCTCAATACTAACAAGCTTT 1010
|||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 942 ATCATCCTTACAAAGAGTATTTAGATGCTAATGTACTCAATACTAACAAGCTTT 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5