BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487040
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02610.2 | Symbols: | Ribosomal L29 family protein | chr5:... 472 2e-132
AT3G09500.1 | Symbols: | Ribosomal L29 family protein | chr3:... 440 6e-123
> AT5G02610.2 | Symbols: | Ribosomal L29 family protein | chr5:587508-588800
FORWARD LENGTH=797
Length=797
Score = 472 bits (255), Expect = 2e-132
Identities = 326/356 (92%), Gaps = 21/356 (6%)
Strand=Plus/Plus
Query 224 ATCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAGCAGAAA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 ATCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAGCAGAAA 370
Query 284 TTTGCTTTAAGAGAGGCATACAAGAACAAGAAGCTCTTGCCTCTTGATCTCCGTCCCAAG 343
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCTGCTTTAAGAGAGGCATACAAGAACAAGAAGCTCTTGCCTCTTGATCTCCGTCCCAAG 430
Query 344 AAAACACGTGCTATCCGTAGACGTCTCACCAAGCATCAGGCTTCGTTGAAGACAGAGCGT 403
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGGCTTCGTTGAAGACAGAGCGT 490
Query 404 GAGAAGAAGAAGGAGATGTATTTCCCAGTGAGGAAGTATGCTATCAAAGCGTAGTTTCAT 463
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 491 GAGAAGAAGAAGGAGATGTATTTCCCAGTGAGGAAGTACGCTATCAAAGTGTAGTTTCAT 550
Query 464 TCACC-AGCTTTAGCTTCTAGAAATGAAT----CGGC-TT--AT----G--T-AT-T--- 504
|| || |||| |||||||||||||||||| | || || || | | || |
Sbjct 551 TCTCCCAGCTCTAGCTTCTAGAAATGAATGATTCAGCCTTTGATTATCGGCTTATGTTAT 610
Query 505 CTCCTCTCTTTTTGTCCAACCTT-TTA-TTTTAGTTTTGCTGAAGTTTTGTTATCA 558
||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||
Sbjct 611 CTCCTCTCTTTTTGTCCAACCTTATTAATTTTAGTTGTACTGAAGTTTTGTTATCA 666
Score = 344 bits (186), Expect = 5e-94
Identities = 213/226 (94%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 1 ATCGTATAAATTATCTTCTTCATCAAAATTAGGGTTTGGAGCCAGAAACGAGCAAGTA-G 59
|||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| || |
Sbjct 18 ATCGTATAAATTTTCTTCTTCAACAAAATTAGGGTTTGGAGCCAGAAAAGAGCAAATAGG 77
Query 60 CGGCACATCAGTTCTCAACACTCACGATGGCGAGGATTAAGGTTCATGAGCTTAGAGATA 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 78 CGGCACATCAGTTCTCAACACTCACGATGGCGAGAATTAAGGTTCATGAGCTTAGAGATA 137
Query 120 AATCAAAGACTGATCTCCAGAATCAGTTGAAGGAATTCAAGGCTGAGCTAGCTCTTCTCC 179
|||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 138 AATCAAAGACCGATCTTCAGAATCAGTTGAAGGAATTCAAGGCTGAACTCGCTCTCCTCC 197
Query 180 GTGTCGCTAAAGTCACCGGAGGTGCTCCCAACAAGCTCTCTAAAAT 225
|||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 198 GTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT 243
> AT3G09500.1 | Symbols: | Ribosomal L29 family protein | chr3:2916952-2918108
FORWARD LENGTH=680
Length=680
Score = 440 bits (238), Expect = 6e-123
Identities = 332/377 (88%), Gaps = 8/377 (2%)
Strand=Plus/Plus
Query 80 CTCACGATGGCGAGGATTAAGGTTCATGAGCTT-AGAGATAAATCAAAGA-CTGATCTCC 137
||||| |||||||||||||||||||| || || || || || || |||| | ||||| |
Sbjct 90 CTCACAATGGCGAGGATTAAGGTTCACGA-ATTGAGGGAGAAGTCGAAGAGC-GATCTTC 147
Query 138 AGAATCAGTTGAAGGAATTCAAGGCTGAGCTAGCTCTTCTCCGTGTCGCTAAAGTCACCG 197
| || ||| |||||||| |||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 148 AAAACCAGCTGAAGGAACTCAAAGCTGAGCTCGCTCTCCTCCGTGTCGCTAAAGTCACCG 207
Query 198 GAGGTGCTCCCAACAAGCTCTCTAAAATCAAGGTTGTGAGGAAATCCATTGCTCAGGTGT 257
|||||||||| ||||||||||||||||||||||| ||| | |||||||| |||||||| |
Sbjct 208 GAGGTGCTCCAAACAAGCTCTCTAAAATCAAGGTCGTGCGTAAATCCATAGCTCAGGTTT 267
Query 258 TGACAGTGATC-TCCCAGAAGCAGAAATTTGCTTTAAGAGAGGCATACAAGAACAAGAAG 316
|||||||| || || ||||||||||| | |||| ||||||| ||||||||||||||||||
Sbjct 268 TGACAGTG-TCTTCTCAGAAGCAGAAGTCTGCTCTAAGAGAAGCATACAAGAACAAGAAG 326
Query 317 CT-CTTGCCTCTTGATCTCCGTCCCAAGAAAACACGTGCTATCCGTAGACGTCTCACCAA 375
| ||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 327 TTGCTT-CCTCTTGATCTCCGTCCCAAGAAGACCCGTGCTATTCGTAGACGCCTCACCAA 385
Query 376 GCATCAGGCTTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAGTGAG 435
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 386 ACACCAGGCCTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAATAAG 445
Query 436 GAAGTATGCTATCAAAG 452
|||||| ||||||||||
Sbjct 446 GAAGTACGCTATCAAAG 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5