BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487043
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02640.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 883 0.0
> AT5G02640.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G46300.1);
Has 37 Blast hits to 37 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:594179-594867
REVERSE LENGTH=689
Length=689
Score = 883 bits (478), Expect = 0.0
Identities = 616/680 (91%), Gaps = 19/680 (3%)
Strand=Plus/Plus
Query 1 AAAAAA-TATTATCAC-AATTAAAAATATAAAAC-TTGAGGATGAACTCAGTGTGTATCT 57
|||||| || |||||| ||| ||||| | |||| ||||| |||||||||||||||||||
Sbjct 10 AAAAAAGTAATATCACAAATCAAAAA-CT-AAACATTGAGAATGAACTCAGTGTGTATCT 67
Query 58 CTAGCTGCATCAACGATGCACATGACCCTCGCGTGCCGGTTCGTCCTGTTCGTGCCTCCT 117
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 68 CCAGCTGCATCAACGATGCACACGACCCTCGCGTGCCGGTTCGTCCTGTACGTGCCTCCT 127
Query 118 ACGTGAATCTCTATAAGTGGCCGGAGTCCGACGCCGAGTTCGTCCGCTCCGTCCGTCGTG 177
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 128 ACGTGAATCTCTATAAGTGGCCGGAGTCCGACGCCGAGTTCGTCAGGTCCGTACGTCGTG 187
Query 178 GAGGCGGCGTACCCGCGGCGCGTGTAGTTGATAGCATATCTTGTCGACAGATGTATCTTC 237
|||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 188 GAGGCGGCCTACCGGCGGCCCGTGTAGTTGATAGCATATCTTGTCGACAGATGTATCTCC 247
Query 238 GGAGCTACACTTTCTCTCGGGAAGACGATGAGAGTAAATCGGAGAA-G-GT-GAC---AA 291
| |||||||||||||||||||||||||| ||||| ||||||||||| | || | | |
Sbjct 248 GTAGCTACACTTTCTCTCGGGAAGACGACGAGAGCAAATCGGAGAAGGTGTCGTCTGGGA 307
Query 292 CGCAGACGTCATGTCTAGGGAGGGTTAAGGAAACAGCGTCGTTTCGACGTAAGAGTAAGG 351
|||||||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct 308 CGCAGACGTCGTGTCTAGGGAGAGTTAAGGGAACAGCGTCGTCTCGACGTAAGAGTAAGG 367
Query 352 AGGAAAATTG---CATCATCGTAGAGAGTACAAAGCCGCGTCGTCGTGGTGAGAGGAGGA 408
|||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 368 AGGAAAATGGCATCATCATCGTTGAGAGTACAAAGCCGCGTCGTCGTGGTGAGAAGAGGA 427
Query 409 GGGTTAGTAGAAAGAAGAAACAAGAACAAGCTTGTTCTGTTATGTTCAGGTTTTTTCGAA 468
| |||||||| ||||| |||||||||||||||||||||||||| || ||| |||||||||
Sbjct 428 GAGTTAGTAGGAAGAACAAACAAGAACAAGCTTGTTCTGTTATTTTAAGGATTTTTCGAA 487
Query 469 GGTTATTGTCTTGTGCTGCTACAGTAGATGTTGTTGATCCAAACTAAATTACtttttttt 528
||||||| |||||||||||||| || ||||||||||||||||||||||| || || |||
Sbjct 488 GGTTATTATCTTGTGCTGCTACCGTTGATGTTGTTGATCCAAACTAAATGAC-TTACTTT 546
Query 529 ttCTGTTCAAATTATAATTAATATTTGGAATTTTTGTTTCTTTGTTTTAATAGTCATCCT 588
||| || |||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 547 TTC--TTAAAATTATAATTAGTATTTGGAATTTTTGTTTCTTTGTTTTAATAGTGATCCT 604
Query 589 TAAATGCATGGTTTTTTAAATTATATCTACttttttttttggttttgttttGTATTTAAA 648
|||||||||||| |||||| |||||| ||||||||| |||| |||||||||||||||| |
Sbjct 605 TAAATGCATGGTCTTTTAA-TTATATTTACTTTTTTGTTTG-TTTTGTTTTGTATTTATA 662
Query 649 CTTGTAATATATAGAATTTT 668
||||||||||||||||||||
Sbjct 663 CTTGTAATATATAGAATTTT 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5