BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487046
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02730.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 891 0.0
> AT5G02730.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr5:615610-616227 FORWARD LENGTH=618
Length=618
Score = 891 bits (482), Expect = 0.0
Identities = 559/596 (94%), Gaps = 6/596 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTCGTCTTCGTTATATAATCCGTTTTGtctctccgtctcct-c--tcttctcctc 57
||||||||||||||||||||| ||||||||||||||||| |||||| | ||| ||||||
Sbjct 1 ATGTCGTCGTCTTCGTTATATCATCCGTTTTGTCTCTCCATCTCCTCCGTTCTCCTCCTC 60
Query 58 ctcATATTAATCTTCTCCGGCGAATTTCCCTCCACCGCCGGAACTTTC-TCGCCGGACAC 116
||| |||||||||||||||| ||||||||||||||||| ||||| ||| || ||||||||
Sbjct 61 CTCCTATTAATCTTCTCCGGAGAATTTCCCTCCACCGCAGGAAC-TTCATCACCGGACAC 119
Query 117 CAAAGCCGCAGCCGCACGTGCTATTAACAGAGGAAGGAGGAATAAGCAATCGGCGGAGTT 176
||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 120 CAAAGCCGCAGCCGCACGTGCGACTAACAGAGGAAGGAGGAATAAGCAATCCGCGGAGTT 179
Query 177 CTTACTCGCTCACAACGCAGCGCGTGGAGCTTCAGGCGCGTCGAATCTAAAATGGGATCA 236
||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 180 CTTACTCGCGCACAACGCAGCGCGTGTAGCTTCAGGCGCGTCGAATCTAAGATGGGATCA 239
Query 237 AGGCCTGGCCCGTTTCGCATCTAAATGGGCCAAACAACGTAAATCGGATTGTAAAATGAC 296
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGGTTGGCCCGTTTCGCATCTAAATGGGCCAAACAACGTAAATCGGATTGTAAAATGAC 299
Query 297 CCATTCAGGTGGGCCTTACGGAGAGAATATTTTTTGGTACCAAAGAAGTGAGAATTGGTC 356
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 300 CCATTCAGGTGGGCCTTACGGAGAGAATATTTTCAGGTACCAAAGGAGTGAGAATTGGTC 359
Query 357 GCCGAGGAGAGTTGTTGAAAAATGGATGGATGAAAGTTTAAACTACGATCGGCTGACTAA 416
|||||||||||||||||| |||||||||||||||||||| |||||||||||| || ||||
Sbjct 360 GCCGAGGAGAGTTGTTGATAAATGGATGGATGAAAGTTTGAACTACGATCGGGTGGCTAA 419
Query 417 TACGTGTAAGTCTGGTGCGATGTGCGGTCATTATACGCAGATCATTTGGCGTACAACCAC 476
|||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 TACGTGCAAGTCTGGTGCCATGTGCGGTCATTATACGCAGATCGTTTGGCGTACAACCAC 479
Query 477 AGCCGTTGGATGCGCTCGTTCTAAGTGTGATAACGACCGTGGATTCCTAGTGATTTGCGA 536
|||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 480 AGCCGTTGGATGCGCTCGTTCTAAATGCGATAACAACCGTGGATTCCTAGTGATTTGCGA 539
Query 537 GTACTCACCTTCGGGAAATTACGAAGGCGAAAGTCCTTTTGATATACTTAAA-TAA 591
||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct 540 GTATTCACCTTCGGGGAATTACGAAGGCGAAAGTCCTTTTGATATACCTAAAATAA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5