BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487048
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02740.1 | Symbols: | Ribosomal protein S24e family protein... 1598 0.0
> AT5G02740.1 | Symbols: | Ribosomal protein S24e family protein
| chr5:616432-618618 FORWARD LENGTH=1123
Length=1123
Score = 1598 bits (865), Expect = 0.0
Identities = 1034/1113 (93%), Gaps = 21/1113 (2%)
Strand=Plus/Plus
Query 12 TTCGTCATCGT---CACTGAGACTCTCTCTGTAGAGAAAAACCCTA-AGATTTTCCGGTG 67
||||||||||| |||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 24 TTCGTCATCGTCACCACTGAGA--CTCTCTGTAGAGAAAAACCCTAGACATTTTCCGGTG 81
Query 68 AGAAATGAGTATCATTCGTAGCGCGATCAGATCGAGCTTGTGTCTCCGGCAGTTGGATCC 127
|||||||||||||| ||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 82 AGAAATGAGTATCACTCGTAGCGCGATCAGATCGAGTTTGTGTCTCCGGAAATTGGATCC 141
Query 128 GGCAATCAGTCGTAGTTCGCTTCCGTTTCTTCAAGAGTGGAGGAAATGCCTATCTACCGC 187
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GGAAATCAGTCGTAGCTCGCTTCCGTTTCTTCAAGAGTGGAGGAAATGCCTATCTACCGC 201
Query 188 CACGGAGCAGCCTCCTCCTGCCTCTCCGTTACCACCGCCTCCGGGAGGTTCTCCAGGACA 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 202 CACGGAGCAGCCTCCTCCTGCCTCTCCGTTACCACCGCCTCCGGGAGGTTCTCCGGGAGA 261
Query 248 AGAGAGGTTTTATGGGAAATTTTCAGGCTTTTCAAAACATGCTCTGAAGACTGATATTAT 307
|| ||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 262 AGGGAGGTTTTATGGGAAGTTTTCAGGCTTTTCAAAACATGCTCTGAAGACAGACATAAT 321
Query 308 GAACATACTCGAGGGCTGCAGTGTGACACCAGATGATCTCAAATTCAACTATCCCCGTGG 367
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 322 GAACGTACTCGAGGGCTGCAGTCTGACATCAGATGATCTCAAATTCAACTATCCGCGTGG 381
Query 368 TGGAAACTTAACTCCTGCGGCAGTTTTTGTGCAGTTCCCTTCCCTTTCCGCATATGATAA 427
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 382 CGGAAACTTAACTCCTGCGGCAGTCTTTGTGCAGTTCCCATCCCTTTCCGCATATGATAA 441
Query 428 AGCACTGCGGAATATCGCAAAGAAAGGAAAGCTATATAGATTAGAAAGGGCTGCTCGTGC 487
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 442 AGCACTGCGGAATATCGCAAAGAAAGGAAAGCTATATAGATTAGAAAAGGCTGCTCGTGC 501
Query 488 TCAGTGGGATCCCGTTGTTCCTTATGAGGGGAAAGTGGTTGCACTACATGGGCTTCCGGT 547
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 502 TCAGTGGGATCCCATTGTTCCTTATGAGGGGAAAGTGGTTGCACTACATGGGATTCCGGT 561
Query 548 GAATGCTATAACAGAGGACATAGATAGGTTCTTATCTGGCTGTCTCTATTATCCTGGATC 607
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GAATGCTATAACAGATGACATAGATAGGTTCTTATCTGGCTGTCTCTATTATCCTGGATC 621
Query 608 CATCCAATTCCTCACAGTCCAAGGACTTGGAACTTCGAAGAGGGTGGCGTTGGTGCGTTT 667
|||||| ||||||||||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct 622 CATCCAGTTCCTCACAGTTCAAGGACTTGGAACTTCAAAGAGGGTAGCATTGGTGCGTTT 681
Query 668 CACATCACAGACCCAGGCAATGAATGCATACATTACAAAGAACAGGAACTTCCTTCTCAA 727
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 682 CACATCACAAACCCAGGCAATGAACGCATACATTACAAAGAACAGGAACTTCCTTCTCAA 741
Query 728 CCAACGAATCACATTGCAAGTTCTGCAGTAATTTCTCAGTTTCCCATTCCATTCTCGTGG 787
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 742 CCAACGAATCACATTGCAAGTTCTGCAGTAATTTCTTAGTTTCT-ATTCCATTCTCGTGG 800
Query 788 TGTATTCCAGTGGTAAGAGATCCAAAGCACttttttttttCTCTACTGTTGGGATGTTTT 847
||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 801 TGTATTCCAATGGTAAGAGATCCAAAGCACTTTCTTTTGTCTCTACTGTTGGGATGTTTT 860
Query 848 AGGTCGACTTGATTATCAAAAAATTCCATCAGAAAACTTCATGATGCTAGAAAAACTATT 907
||||||| ||| |||||||||| ||||||| | |||||||| |||||| || ||||| ||
Sbjct 861 AGGTCGATTTGGTTATCAAAAATTTCCATCTGCAAACTTCACGATGCTTGATAAACTGTT 920
Query 908 GTTGTCTCTCT-T-CCCTGTGGTTCAATAT-GAAGTTGATGAATAACAAATAAATGTGTC 964
||||||||||| | ||||| | |||| | | ||||||||||||||||||||| |||||||
Sbjct 921 GTTGTCTCTCTCTTCCCTG-G-TTCAGT-TCGAAGTTGATGAATAACAAATACATGTGTC 977
Query 965 TTAGTAGGAGCAGAAAGTTTCAGATAAGCAGATGCTAAATTGTTAACTATGTGATCtttt 1024
||||||| |||||||||| ||| ||||||||||| || | | ||||||||||||||
Sbjct 978 TTAGTAGAAGCAGAAAGTCTCACATAAGCAGATGTTA--T----A-CTATGTGATCTTTT 1030
Query 1025 tttCTTTCGTGTATTTTGACTAAAGCTGTTATCTTTGGATGCCCATGTGGGTGAAGTGAT 1084
| |||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1031 TCTCTTTCTTGTATTTTGACTAAAGCTGTTATCATTGGATGCCCATGTGG-TGAAGTGAT 1089
Query 1085 CCGTCTTGCTTTTAGAAAGTGAATGACTTTGTA 1117
|| || |||||||||||||||||||| ||||||
Sbjct 1090 CCATCGTGCTTTTAGAAAGTGAATGAATTTGTA 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54768794595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5