BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487049
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02750.1 | Symbols: | RING/U-box superfamily protein | chr5... 1384 0.0
> AT5G02750.1 | Symbols: | RING/U-box superfamily protein | chr5:620094-621179
FORWARD LENGTH=1086
Length=1086
Score = 1384 bits (749), Expect = 0.0
Identities = 887/954 (93%), Gaps = 7/954 (1%)
Strand=Plus/Plus
Query 1 AATATGGAGGAAGGAAACATCACAATCATCATGGCGtcactctctactctttctccttca 60
|||||||| || | ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 5 AATATGGAAGACGAAAACACCACAATCATCATGGCGTCACTCTCTGCTCTTTCTCCTTCA 64
Query 61 cacctcacaaatctcactcactcccttctctcaatctcCCACCACCATCGCCGCCGcctc 120
|||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 65 CACCTCACGAATCTGACTCACTCCATTCTCTCTATCTCCCACCACCATCGCCGCCGCCTC 124
Query 121 gccaccgtcctctcatctccgacccttttctccctcactctccgccacctcctctctcta 180
| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GGTGCAGTCCTCTCCTCTCCGACCCTTTTCTCCCTCACTCTCCGCCACCTCCTCTCTCTA 184
Query 181 tctctTCCCGACAAAACCCACCTCATCGCCAACCATCTCCTTTCTCTCCTTCACCCTCTT 240
|||||||| |||||||| |||||||||||||||||||| || || ||||| || ||||||
Sbjct 185 TCTCTTCCTGACAAAACTCACCTCATCGCCAACCATCTTCTCTCCCTCCTCCATCCTCTT 244
Query 241 CTCATCCACCGTAAACATCACTCCTCCTCCACCGTCACCATGAAGCTCCGGGACCTAGAC 300
||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 245 CTCATCCACCGTAAACACCACTCCTCCTACGCCGTCACCATGAAGCTCCGGGACCTAGAC 304
Query 301 GCGGTGGTCCTCCTCCTCTTTCTCTGCGAAACCCACCAGCATCATCCAGATGTTTTAGAA 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 305 GCGGTGGTCCTCCTCCTCTTTCTCTGCGAAACCCACCAGCTTCATCCAGATGTTCTAGAA 364
Query 361 GCGTCCGCCGATAATTGGCGGGAAATTCTCGGTAATACGTACTCTAATACCATGTTAACT 420
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 365 GCTTCCGCTGATAATTGGCGGGAAATTCTCGGTAATACGTACTCTAATAATATGTTAAGT 424
Query 421 AATAATTCCGGTCTTTGGACTTGCGATGCCGGAATCTTGATGCCTTACATAGAAACCCTA 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 425 AATAATTCCGGTCTTTGGACTTGCGATGCCGGAATCTTGATGCCGTACATAGAAACCCTA 484
Query 481 GTTAGATGCAAAAGGTTTGTTGACATAATGGGAGGCTACAACCATCTTCGCCGACGAGAT 540
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 485 GTTAGATGCAAAAGATTTGTTGACATAATGGGAGGCTATAACCATCTTCGTCGAAGAGAT 544
Query 541 CAAAAAGAAGGCTACGAAGTTCCGGCTGCTAGAGCGGCTGTTGTGGCGTTACGAGCGGTT 600
||||||||||||||| ||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct 545 CAAAAAGAAGGCTACCAAGTTCCAGCCGCTAGAGCGGCTGTGGTGGCGTTACGGGCGGTT 604
Query 601 GAGGTTTTCAGCGCCGCCGCTTCAAACGCCGGAGAAGTAGAATGCGTGATATGCAAGGAA 660
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GAGGTTTTCAACGTCGCCGCTTCAAACGCCGGAGAAGTAGAATGCGTGATATGCAAGGAA 664
Query 661 GAGATGAGCGAAGGAAGAGATGTTTGTGAAATGCCATGTCAGCATGTGTTTCACTGGAAG 720
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 665 GAGATGAGCGAAGGAAGAGATGTGTGTGAAATGCCATGTCAGCATTTCTTTCACTGGAAG 724
Query 721 TGTATCTTGCCGTGGCTAAGCAAAAAGAACACGTGTCCTTTCTGCAGGTTTCAACTTCCC 780
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 725 TGTATCTTGCCGTGGCTAAGCAAGAAGAACACGTGTCCGTTCTGCAGGTTTCAGCTTCCC 784
Query 781 ACCGACGATGTCTTCTCGGAGATCCAACGGCTGTGGGAGATGCTCGTCAAGAGCAGCGAG 840
||||||||||||||||| |||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 785 ACCGACGATGTCTTCTCAGAGATCCAACGGTTATGGGAGATCCTCGTCAAGAGTAGCGAG 844
Query 841 TTACACGTGGCGTAATCTCAGCTTT-CGGTGATGAATACATGTGTAAGAAGAACTATAGA 899
||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||| |||
Sbjct 845 TTACACGTGGCGTAATCTCAG-TTTGCGGTGATGGGTACATGTGTAAGAGGAACTAAAGA 903
Query 900 AGCGTGTTCATCGTAATCTAGTAATAATATCTATGTAGAATAATATATCAAGTA 953
||| ||| |||||||||||| | || || ||||||||||||||||||||||||
Sbjct 904 AGCCTGTACATCGTAATCTA--A-TA-TA-CTATGTAGAATAATATATCAAGTA 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46617288416
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5