BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487051
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02770.1 | Symbols: | unknown protein; Has 469 Blast hits t... 2531 0.0
AT5G02760.1 | Symbols: | Protein phosphatase 2C family protein... 147 5e-34
> AT5G02770.1 | Symbols: | unknown protein; Has 469 Blast hits
to 336 proteins in 126 species: Archae - 0; Bacteria - 54;
Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes
- 97 (source: NCBI BLink). | chr5:627034-629255 REVERSE
LENGTH=1707
Length=1707
Score = 2531 bits (1370), Expect = 0.0
Identities = 1562/1655 (94%), Gaps = 12/1655 (1%)
Strand=Plus/Plus
Query 1 AAGTGCGTATTTCGAACGGAGCTGCGATTCCATGGCGACCAACGGAAATAAGGTCACGGC 60
||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 57 AAGTGCGAATTTCGAACGGAGCTACGATTCCATGGCGACCAACGGAGAGAAGGTCACGGC 116
Query 61 TACGGTGGAGAATGGCGGTGGGCTTTCTACTGGTGAAAACCCTAAGAAAATCGTAGACCT 120
|||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 117 TACGGTGGTGAATGGCGGAGGGCTATCTACTGGTGAAAACCCTAAGAAAATTGTAGACCT 176
Query 121 CAACACTACGGAGTTAGATCGTACTGACGACATTCTCGACGGAGAAGTTAAGGGATTTAC 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 177 CAACACTACGGAGTTAGATCGTACTGACGACATTCTCGACGGAGAAGTCAAGGGATTTTC 236
Query 181 AGATTCTGGTGAAAAGAAGGACGAAACTGACTCTAATGGTATTGGATCGACGGCTGGTGT 240
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 237 AGATTCTGGTGAAAAGAAGGAAGAAACCGACTCTAATGGTATTGGATCGACGGCTGGTGT 296
Query 241 TGATTCTGGTGATATCTCTCCGGTCGATGATATCCAGAAGAAGATTCGACGTGCTGAGAG 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGATTCTGGGGATATCTCTCCGGTCGATGATATCCAGAAGAAGATTCGACGTGCTGAGAG 356
Query 301 GTTTGGTGTTTCGGTGAAACTAACCGAAGAGGAGAAGCGCAATTCTCGTGCTGAGAGGTT 360
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTTTGGTGTTTCGGTGAAATTGACCGAAGAGGAGAAGCGCAATTCTCGTGCTGAGAGGTT 416
Query 361 CGGTACTGTAGCTGCAGCAGTGGTGAATGGCTCAGAGGGAACGAAGAAAGCAGAGGAATT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGGTACTGTAGCTGCAGCAGTGGTGAATGGCTCAGAGGGAACGAAGAAAGCAGAGGAATT 476
Query 421 GAAGCGAAAGGCTAGAGCTGATAGATTTGGGGTTCCTGCTGCGACCTCTACTACTGATAA 480
||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 GAAGCGAAAAGCAAGAGCTGATAGATTTGGGGTTCCTTCTGCGACCTCTACTACTGATAA 536
Query 481 CACTGAGGAAGAAGCAAAGAAGAAAGCTAGGCTCGCTCGTTTTGGGAAAGAGACTAAAGT 540
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 GACTGAGGAAGAGGCAAAGAAGAAAGCTAGGCTCGCTCGTTTTGGAAAAGAGACTAAAGT 596
Query 541 TGATTCTGCTGAAGAAGATAAGCGCAAAGCTAGAGCATTGAGGTTTTCAAAAGGGGCTTC 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 597 TGATTCTGCTGAAGAAAATAAGCGCAAAGCTAGAGCATTGAGGTTTTCAAAAGAGGCTTC 656
Query 601 AGCAGATGCATCTTCAGATTTACCTGGGAAGCAAAATATTGGCAAGGAGGCAGCTGTATC 660
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 657 AGCAGATGCATCTTCAGATTTACCTGAGAAGCAAATTATTGGCAAGGAGGCAGCTGTATC 716
Query 661 AGGAAACGCTGCCTGAGGTTCCTCAAT-AAGTTTTTCCGTCTTTGTAGTTAGGTAGTGTG 719
||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 AGGAAGCGCTGCCTAAGGTTCCTCAATAAAGTTTTTCCGTCTTTGTAGTTAGGTAGTGTG 776
Query 720 CTAGCGTTTTATGATTCCCTCTCTGGCTGCTTCATTCTCTCTTTATTTCTGAATTAGAAG 779
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CTAGCGTTTTATGAGTCCCTCTCTGGCTGCTTCATTCTCTCTTTATTTCTGAATTAGAAG 836
Query 780 TCCCCGTGTGTAGTATCTTTATTAAGTTCGGAAGAT-AAGCTGTCACCAGATGAGATCTT 838
||| |||||||||||||||| ||||||||| | | ||| |||||||||||||||||
Sbjct 837 TCCATGTGTGTAGTATCTTTACTAAGTTCGGTCG-TGGAGCAATCACCAGATGAGATCTT 895
Query 839 GGGAAACCAATAAGTAACCTATAGTTTTGATTGTCTTAAATGGCGATTATCAAAGTG-TT 897
| |||||||||||||||||||||||| ||||||||| ||||| | |||||||| ||| ||
Sbjct 896 GAGAAACCAATAAGTAACCTATAGTTCTGATTGTCTGAAATGACAATTATCAATGTGTTT 955
Query 898 AGGATCTAGGAATTCTGAAGTGGCTGGTATTGATGTTTTCCATGTTGCAGGTTCTTGAAG 957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 956 AGGACCTAGGAATTCTGAAGTGGCTGGTATTGATGTTTTCCATGTTGCAGGTTCTTGGAG 1015
Query 958 TGGTAAGTATAGCTTGAGTAATACCTTTATTTCGTTTTAATATATGGGAATGTGGATGGT 1017
|||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1016 TGGTAAGTATAGTTTGATTAATAACTTTATTTCGTTTTAATATATTGGAATGTGGATGGT 1075
Query 1018 CC-TTTAGTATTGCATGTTCGTATCAAGCACAGGCAGCAGCAATCGAAAATTTGTACTGC 1076
|| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 1076 CCTTTTAGTATTGCATGTTCGTATCAAGCACAAGCACCAGCAATTGAAAATTTGTACTGC 1135
Query 1077 ATGCAGCAAATATTTAAGGAAGAGATA-AAAAATTTGCTGTTTTGAAGGCTAGTTAGAAA 1135
|||||||||||||||||| ||| || | | ||| |||||||||| |||||||||||
Sbjct 1136 ATGCAGCAAATATTTAAGTAAGGGAGACATTTTTTTACTGTTTTGAA--CTAGTTAGAAA 1193
Query 1136 TAAGAAGTGTTGATTACTTTTGAATTGTGCCTATTTTGCTAGTTTTTCTTAGTCATGGTT 1195
| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1194 TTAGAAGTGTTGATTACTTTTGAGTTGTGCCTATTTTGCTAGTTTTTCTTAGTCTTGGTT 1253
Query 1196 ACGAAATTAAGCTGGTCTACTGGTGTTCTGTGCTTGATTGCGAATATTGCATGCAAAATG 1255
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ACGAAATTTAGCTGGTCTACTGGTGTTCTGTGCTTGATTGCGAATATTGCATGCAAAATG 1313
Query 1256 GATCCCATAAACATGTGTCGTTCTTTGGTTACTTATTTTCATATGACCTCTCATGCCGCT 1315
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct 1314 GATCCCATAAACATGTGTCGTTCTTAGGTTACTTAATTTCATATGACCTCTCAAGCCGCT 1373
Query 1316 ACTTCAGAATTTCTTTGTCATGTACGACATCATTAGAACTATAGAGGTACTTGTTGGTTT 1375
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1374 ACTTCAGAATTTCTTTGTCATGTAAGACATCATTAGAACTATAGATGTACTTGTTGGTTT 1433
Query 1376 CTATATCTCTGGTCTCTATGGCAGCTGAAGGAAAGAGAGCCTCAGATTCTAAA-TCTCTG 1434
| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1434 CCATATCTCTGGTCTCTATGGCAGTTGAAGGAAAGAGAGCCTCAGATTCTAAATTCTCTG 1493
Query 1435 TTCGTGGGACTGGGACTTTACTGGCTTTCTGATGCTACACAATTTCTTTGTTTCTGTAAT 1494
|||||||||||| | ||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1494 TTCGTGGGACTGCGTTTTTGCTGGC-TTCTGATGCTACACAGTTTCTTTGTTTCTGTAAT 1552
Query 1495 AGATTTTAGAT--ACTCTTGTTGATACTTGCTTTCTGTTAATTTTGAATGAAGCGCCAGA 1552
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 AGATTTTAGATAAACTTTTGTTGATACTTGCTTTCTGTTAATTTTGAATGAAGCGCCAGA 1612
Query 1553 AAACTTTTATAAAGGGAATGTAATGTTAAGTTTCAACACATTTTTTGGCTATGTATTGTT 1612
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1613 AAACTTTTATAAAGGGAATGTAATGTTAAGTTTCAACACATTTCTTGGCTATCTACTGTT 1672
Query 1613 TTGTGCCTAAACTCCAATATATTGCAACGCTTTCG 1647
|||||||||||||||||||| ||||||||||||||
Sbjct 1673 TTGTGCCTAAACTCCAATATGTTGCAACGCTTTCG 1707
> AT5G02760.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:625254-627124 FORWARD LENGTH=1543
Length=1543
Score = 147 bits (79), Expect = 5e-34
Identities = 87/91 (96%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 1557 TTTTATAAAGGGAATGTAATGTTAAGTTTCAACACATTTTTTGGCTATGTATTGTTTTGT 1616
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1543 TTTTATAAAGGGAATGTAATGTTAAGTTTCAACACATTTCTTGGCTATCTACTGTTTTGT 1484
Query 1617 GCCTAAACTCCAATATATTGCAACGCTTTCG 1647
|||||||||||||||| ||||||||||||||
Sbjct 1483 GCCTAAACTCCAATATGTTGCAACGCTTTCG 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5