BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487053
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02780.1 | Symbols: GSTL1 | glutathione transferase lambda 1... 1286 0.0
> AT5G02780.1 | Symbols: GSTL1 | glutathione transferase lambda
1 | chr5:630876-632683 FORWARD LENGTH=993
Length=993
Score = 1286 bits (696), Expect = 0.0
Identities = 863/940 (92%), Gaps = 25/940 (3%)
Strand=Plus/Plus
Query 1 CATAGTTCCTGCAAAACATCATCTCTGTAATAACAATCCCCTGAAGAAACAACTCTTATA 60
|||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 11 CATAGTTCCTTTAAAACATCATATCTGCAATAATAATCCCCTGAAGAAACAACTCTTAT- 69
Query 61 TATTAATCCTCTCCATGGCTCTATCTCCT-CAAAAATGTTTCGTAGAAGATCGTCAAGTT 119
| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||
Sbjct 70 CA--AATCCTCTCCATGGCTCTATCTCCTCCAAAAAT-TTTCGTAGAAGATCGTCAGGTT 126
Query 120 CCGCTCGATGCTACCTCTGATCCACCTGCTCTGTTCGACGGAACCACAAGGTTGTACATA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CCGCTCGATGCTACCTCTGATCCACCTGCTCTGTTCGACGGAACCACAAGGTTGTACATA 186
Query 180 AGCTACACCTGCCCATTTGCACAACGTGTTTGGATTACCAGAAACCTCAAGGGTCTGCAA 239
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 187 AGCTACACTTGCCCATTTGCACAACGTGTTTGGATTACAAGAAACCTCAAGGGTCTGCAA 246
Query 240 GAGGAGATCAAATTGGTTCCTATAGACCTTCCTAATAGGCCAGCTTGGTTAAAGGAGAAA 299
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 247 GATGAGATCAAATTGGTTCCTATAGATCTTCCTAATAGGCCAGCTTGGTTAAAGGAGAAA 306
Query 300 GTTAATCCTGCAAACAAGGTTCCTGCCCTTGAACACAATGAAAAAATCATTGCGGAAAGT 359
|||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||
Sbjct 307 GTTAATCCTGCAAACAAGGTTCCTGCCCTTGAACACAATGGAAAAATCACTGGGGAGAGT 366
Query 360 CTTGATTTAATCAAATATGTCGATATCAATTTCGATGGGCCTTCACTTTACCCCGAGGAT 419
|||||| |||||||||||||||||| |||||| ||||| |||||||||||||| ||||||
Sbjct 367 CTTGATCTAATCAAATATGTCGATAGCAATTTTGATGGACCTTCACTTTACCCTGAGGAT 426
Query 420 TCTGCAAAGAGAGAGTTTGGTGAAGA-CTTGTTGAAATATGTTGATGCAACATTTGTAAA 478
|||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||
Sbjct 427 TCTGCAAAGAGAGAGTTTGGTGAAGAACT-GTTGAAATATGTCGATGAAACATTTGTAAA 485
Query 479 AACCGTGTTTGGCTCTTTTAAAGGTGACCCGGTTAAAGAAACAGCATCGGTCTTCGATCA 538
||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 486 AACTGTGTTTGGCTCTTTCAAAGGTGACCCGGTTAAAGAAACAGCATCAGCCTTCGATCA 545
Query 539 CGTGGAAAATGCTTTGAAGAAGTTTGATGATGGTCCTTTCTTCCTCGGCGATCTTAGTTT 598
||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 546 CGTGGAAAATGCTCTGAAAAAGTTTGATGATGGTCCTTTCTTCCTTGGCGAGCTTAGTTT 605
Query 599 GGTTGATATCGCATATATCCCATTTATCGAACGATTTCAAGTCTTCCTCGACGAAGTTTT 658
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 606 GGTTGATATTGCATATATCCCATTTATCGAACGCTTTCAAGTCTTCCTCGACGAAGTTTT 665
Query 659 TAAATATGAAATTATAATCGGACGTCCAAATCTAGCTGCTTGGATTGAG-AACATGAACA 717
|||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||
Sbjct 666 TAAATATGAAATTATAATCGGACGGCCAAATCTAGCTGCTTGGATTGAGCAA-ATGAACA 724
Query 718 AGATGGTTGCATATACGCAGACAAAAACCGACTCAGACTATATCGTCAATTATTTTAAGA 777
|||||||||||||||||||||| ||||||||||| || ||| | |||||||| || ||||
Sbjct 725 AGATGGTTGCATATACGCAGACCAAAACCGACTCCGAATATGTTGTCAATTACTTCAAGA 784
Query 778 -AGTTCATGTAAAAATAACAAATCTGTTGGACTCAGTCGTTGGTATCGATGCCAACAGGG 836
| ||||||||||| |||||||||||||||||| | | |||| |||||||| | ||
Sbjct 785 GA-TTCATGTAAAAGTAACAAATCTGTTGGACT---T--T-GGTAACGATGCCATGATGG 837
Query 837 CTTACGAAGAAGAAAGATGACTACTGCTTGAGAGTGTTATAAAATTACTGGATTTGGTAT 896
|||| |||||||||| || |||||| | |||||||||||||| || |||||||||||||
Sbjct 838 CTTATGAAGAAGAAATATTACTACT--T-GAGAGTGTTATAAATTT-CTGGATTTGGTAT 893
Query 897 TGTAG-TTT-GT--TAAATAAGAAAAATTTGGTATTGTTT 932
|||| ||| || ||||||||| | ||||||||||||||
Sbjct 894 TGTACATTTTGTGATAAATAAGAGATATTTGGTATTGTTT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5