BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487056
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02800.1 | Symbols: | Protein kinase superfamily protein | ... 2488 0.0
> AT5G02800.1 | Symbols: | Protein kinase superfamily protein
| chr5:635228-637503 REVERSE LENGTH=1583
Length=1583
Score = 2488 bits (1347), Expect = 0.0
Identities = 1500/1573 (95%), Gaps = 13/1573 (1%)
Strand=Plus/Plus
Query 1 TTTTCTACATTTCAAAGTtctctcagcttctttctctctctctctctctcGCTTTCGAGA 60
|||| |||||||||||||||||| || | | ||||||||||||||||||||| ||||
Sbjct 16 TTTTTTACATTTCAAAGTTCTCTAAG---C--T-TCTCTCTCTCTCTCTCGCTTTTGAGA 69
Query 61 TCATCGAACACAATCAAAACGAAGAATCACTTGAAGAGGAAGAAGATC--GAGAAGCTTA 118
||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 70 TCATCGAACACAATCGAAACGAAGAATCATTTGAAGAAGAAGAAGATCGTGAGAAGCTTA 129
Query 119 ATGGGTTGGATCCCGTGTTCTGGGAAATCGAGCGGGAGGACTAAGACAAGGAGGAACGGT 178
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 130 ATGGGTTGGATCCCGTGTTCTGGGAAATCGAGTGGGAGGAATAAGACAAGGAGGAACGGT 189
Query 179 GACCAAAAACTCAACAGGAAGTCTTCTGATTGTTCTGTCTCTACTTCAGAGAAATCTAAG 238
||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 190 GACCACAAACTCGACAGGAAGTCTTCTGATTGTTCTGTGTCTACTTCAGAGAAATCTAGG 249
Query 239 GCCAAGTCGTCCTTGAGTCAATCCAAAAGTAAAGGCTCTGATCACATTGTCGCACAAACG 298
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 250 GCCAAGTCGTCCTTGAGTGAATCCAAAAGTAAAGGCTCTGATCACATTGTGGCACAAACG 309
Query 299 TTTACATTCTCTGAGCTAGCTACTGCCACTAGAAACTTCAGAAAAGAATGTCTTATAGGA 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TTTACATTCTCTGAGTTAGCTACTGCCACTAGAAACTTCAGAAAAGAATGTCTTATAGGA 369
Query 359 GAAGGTGGATTTGGTAGAGTTTACAAAGGATATTTAGCCAGCACTGGCCAGACAGCGGCT 418
||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 370 GAAGGAGGATTTGGTAGAGTTTACAAAGGATACTTGGCCAGCACTAGCCAGACAGCGGCT 429
Query 419 ATCAAGCAACTTGATCATAATGGTTTACAAGGAAACAGGGAGTTCCTCGTCGAGGTTCTC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ATCAAGCAACTTGATCATAATGGTTTACAAGGAAACAGGGAGTTCCTCGTCGAGGTTCTC 489
Query 479 ATGTTGAGTCTTCTTCATCACCCCAATCTTGTTAACTTAATAGGATATTGTGCTGATGGA 538
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 490 ATGTTGAGTCTTCTTCATCACCCGAATCTTGTTAACTTAATAGGATATTGTGCTGATGGA 549
Query 539 GATCAAAGGCTTCTAGTTTACGAGTACATGCCCCTAGGTTCACTTGAAGATCATTTGCAC 598
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GATCAAAGGCTTCTAGTCTACGAGTACATGCCCCTAGGTTCACTTGAAGATCATTTGCAC 609
Query 599 GACATTTCACCTGGTAAGCAGCCACTTGACTGGAACACCAGAATGAAAATAGCTGCAGGT 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 610 GACATTTCACCTGGTAAGCAGCCACTTGACTGGAACACCAGAATGAAAATAGCTGCCGGT 669
Query 659 GCTGCAAAAGGATTAGAGTATCTGCATGACAAAACCATGCCTCCAGTGATCTATCGAGAT 718
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GCTGCAAAAGGTTTGGAGTATCTGCATGACAAAACCATGCCTCCAGTGATCTATCGAGAT 729
Query 719 TTGAAATGCTCAAATATTTTGCTCGACGATGATTACTATCCAAAGCTATCCGACTTCGGG 778
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 730 TTGAAATGCTCAAATATTTTGCTCGATGATGATTACTTTCCAAAGCTATCCGACTTCGGG 789
Query 779 TTGGCTAAACTTGGCCCAGT-GGGTGACAAGTCTCATGTGTCGACTCGAGTTATGGGAAC 837
|||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||
Sbjct 790 TTGGCTAAACTTGGCCCAGTTGGG-GACAAGTCTCATGTGTCCACTCGGGTTATGGGAAC 848
Query 838 ATACGGATACTGTGCTCCCGAGTATGCAATGACAGGCCAACTAACACTCAAATCAGACGT 897
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 849 ATACGGATACTGTGCTCCCGAGTATGCAATGACAGGCCAGCTAACACTCAAATCAGACGT 908
Query 898 TTACAGTTTCGGTGTTGTTCTGTTGGAGATTATAACCGGTAGGAAAGCAATAGACAGTTC 957
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 909 TTACAGCTTCGGTGTTGTTCTGTTGGAGATTATAACTGGTCGGAAAGCAATAGACAGTTC 968
Query 958 AAGATCCACTGGAGAACAGAATCTAGTTGCATGGGCTAGGCCTTTGTTTAAAGACAGGAG 1017
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 969 AAGATCTACTGGAGAACAGAATCTAGTCGCATGGGCAAGGCCTTTGTTTAAAGACAGGAG 1028
Query 1018 GAAATTCTCTCAAATGGCTGATCCAATGCTTCAAGGTCAATACCCTCCGCGAGGGTTGTA 1077
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1029 GAAATTCTCTCAGATGGCTGATCCAATGCTTCAAGGTCAATACCCTCCGCGAGGGTTATA 1088
Query 1078 CCAAGCACTCGCTGTAGCAGCGATGTGCGTACAAGAACAGCCAAATCTTAGACCTCTCAT 1137
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1089 CCAAGCACTCGCTGTAGCAGCGATGTGCGTACAAGAGCAGCCAAATCTTAGACCTCTCAT 1148
Query 1138 TGCGGACGTGGTCACTGCACTTTCTTACCTCGCTTCCCAGAAGTTCGATCCTTTGGCTCA 1197
||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||| |||||||
Sbjct 1149 TGCTGACGTCGTCACTGCACTTTCTTACCTCGCCTCCCAAAAGTTTGATCCTCTGGCTCA 1208
Query 1198 GCCAGTCCAAGGATCCCTTTTCGCTCCCGGGACTCCACCTAGATCAAAGAGGGTCTGAAG 1257
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1209 GCCAGTCCAAGGATCCCTTTTCGCTCCAGGGACTCCACCTAGATCAAAGAGGGTCTGAAA 1268
Query 1258 ATAATCCCGAGAACCGCAATGCTGTGTAAGTTATTTAGCTTAAACCCATACTGGGCTGTC 1317
|||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||
Sbjct 1269 ATAATCCCGAGAACCGCAATGCTGTGTAAGTTATGTAGCTTAAACCCATTCCGTGCTGTC 1328
Query 1318 TTTCTTG-AGGAGGAAAGGTGGATGATTTTCAGACTAAGTGTGGAAAGTATGGCTTAAGA 1376
||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1329 TTTCTTGGAG-AGGAAAGGTGGATGATTTTCAGACTAAGTGTG-AATGTATGGCTTAAGA 1386
Query 1377 GCTGCTTGTAGATATGTGTAAGAAGAGATAGATTCATATAGAGGCCGGTTTATAATGTTG 1436
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GCTACTTGTAGATATGTGTAAGAAGAGATAGATTCATATAGAGGCCGGTTTATAATGTTG 1446
Query 1437 TTATAGGTGATGTTGTTTAATGTAATGTTTATTGAGCACTTGCTCTGAAATGTGACAATT 1496
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 1447 TTATAGGTGATGTTGTTTAATGTAATGTTTATTGAGCGCTTGCTTTCAAATGTGACAATT 1506
Query 1497 TCTCATTATTGTATTGAGGATGTCTGTTTTGATTCCAAAGTTATTGTATAACTATTAAAA 1556
||||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 1507 TCTCATTATTGTACTGAGGATGTCTGCTTCGATTCCAAAGTTATTGTATAAATATTAAAG 1566
Query 1557 TACTATAGTTTTC 1569
|||||||||||||
Sbjct 1567 TACTATAGTTTTC 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5