BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487058
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02820.1 | Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI,... 2335 0.0
> AT5G02820.1 | Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI,
subunit A protein | chr5:642558-644394 FORWARD LENGTH=1655
Length=1655
Score = 2335 bits (1264), Expect = 0.0
Identities = 1418/1493 (95%), Gaps = 7/1493 (0%)
Strand=Plus/Plus
Query 1 CATTCACGAGATACGTTGACCTAAAAGAGTAAATTTTCCCGCCACCGTTAGTACCAGAAC 60
|||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 1 CATTCACGAGATACGTTGACCT-AAAGGGTAAATTTTCCCGCCATTGTTAGTACCAGAAC 59
Query 61 TCTCTGGGCCGCCGCGTCTCCGTCGTCGTCGCTGTCTACAGATGGCGGATAAGAAGAAGC 120
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 60 TCTCTGGGCCGCCGCGTCTCCGTCGTCGTGGCTATCTACAGATGGCGGATAAGAAGAAGC 119
Query 121 GAAAGCGATCTAAAGATGACGAGGCGGAGGAACTTCCTTTCAAAAGCATTCTGGAATCAG 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAAGCGATCAAAAGATGACGAGGCGGAGGAACTTCCTTTCAAAAGCATTCTGGAATCAG 179
Query 181 ATGAAATTATCACGGAGCTTCTCAAATCATATATCTCCTCTTCTATCAAAGCCGCCGCCG 240
| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 180 ACGACGTTATCACGGAGCTTCTCAAATCGTATATTTCCTCTTCTATCAAAGCCGCCGCCG 239
Query 241 GAGCTGGCGGTGCCTCCTCCTCTTCATCGAAACCACTAACCCTAGCTGACCTCTCTCTCT 300
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 240 GAGCCGGCGGTGCCTCCTCCTCTTCATCGAAACCTCTAACCCTAGCTGACCTCTCTCTAT 299
Query 301 CATCTTCCTGCCGTGAAGTCGCAGATCTCTCACTCTCCTCCGTGCAGACAGAGATAGAGA 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATCTTCCTGTCGTGAAGTCGCAGATCTCTCACTCTCCTCCGTGCAGACAGAGATAGAGA 359
Query 361 CAGTCATCGTCCAGATCGCCCGTTCCATTCTCGCCGGCGATGGCTTTTCCTTCAGTGTTC 420
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 360 CAGTCATCGTCCAGATCGCCCGTTCTATTCTCGCCGGTGATGGCTTCTCCTTCAGTGTTC 419
Query 421 CTTCACGCGCCGCCTCGAATCAGCTGTATGTCCCGGAGCTCGACCGTATTGTGTTAAAAG 480
||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||
Sbjct 420 CTTCACGCGCCGCCTCGAATCAGCTGTATGTTCCTGAGCTCGACCGTATAGTGCTAAAAG 479
Query 481 ACAAATCCACCCTCCGGCCATTTGCCTCCGTTTCTTCTGTCAGGAAAACCACCATCACCA 540
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAAATCTACCCTCCGTCCATTTGCCTCCGTTTCTTCTGTCAGGAAAACCACCATCACCA 539
Query 541 CTCGTATCCTTGCCCTTATCCACCAACTCTGCCTCAGGAACATTCATGTCACTAAGCGTG 600
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 540 CTCGTATCCTCGCCCTTATCCACCAACTCTGCCTCAGGAACATTCACGTTACTAAGCGTG 599
Query 601 ATCTCTTCTACACCGACGTTAAGCTTTTCCAGGACCAGACACAGAGTGATGCTGTGTTGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATCTCTTCTACACCGACGTTAAGCTTTTCCAGGACCAGACACAGAGTGATGCTGTGTTGG 659
Query 661 ATGATGTCTCATGTATGCTCGGTTGCACAAGGTCAAGCCTCAATGTAATTGCAGCAGAGA 720
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 660 ATGATGTCTCATGTATGCTCGGTTGCACAAGGTCAAGTCTCAATGTCATTGCAGCAGAGA 719
Query 721 AAGGAGTGGTGGTGGGAAGGCTCATATTCAGTGACAATGGAGATATGATAGATTGCACAA 780
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 720 AAGGTGTGGTGGTGGGAAGGCTTATATTCAGTGACAATGGAGACATGATAGATTGCACAA 779
Query 781 AGATGGGGATGGGTGGGAAAGCCATTCCACCAAACATCGACCGGGTTGGAGATATGCAGA 840
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 AGATGGGAATGGGTGGGAAAGCCATTCCACCAAACATTGACCGGGTTGGAGATATGCAGA 839
Query 841 GTGATGCTATGTTCATACTCTTAGTTGAAAAAGATGCAGCTTATATGAGGTTAGCTGAAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTGATGCTATGTTCATACTCTTAGTTGAAAAAGATGCAGCTTATATGAGGTTAGCTGAAG 899
Query 901 ACAGATTCTATAACCGGTTCCCTTGTATCATCGTGACTGCAAAAGGCCAGCCCGATGTAG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 ACAGATTCTATAACCGGTTCCCTTGTATCATCGTGACTGCAAAAGGCCAGCCTGATGTAG 959
Query 961 CTACAAGGCTGTTCTTGAGGAAAATGAAAATGGAGCTTAAGCTTCCAGTGCTTGCCTTGG 1020
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 960 CTACAAGGCTCTTCTTGAGGAAAATGAAAATGGAGCTTAAGCTTCCGGTACTTGCCTTGG 1019
Query 1021 TGGATAGTGATCCTTACGGGTTGAAGATCTTGTCAGTATATGGATGTGGGTCGAAGAATA 1080
||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct 1020 TGGATAGTGATCCTTACGGATTGAAGATCTTGTCGGTGTATGGATGTGGGTCGAAGAACA 1079
Query 1081 TGTCTTATGATAGTGCAAATTTGACTACACCTGATATTAAGTGGCTTGGAATCAGGCCCA 1140
|||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1080 TGTCATATGATAGTGCAAACTTGACTACGCCTGATATTAAGTGGCTTGGAATTAGGCCGA 1139
Query 1141 GTGATTTGGACAAGTATAAGATACCTGAACAGTGTAGGCTGCCAATGACTGAGCAGGATA 1200
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1140 GTGATTTGGACAAGTATAAGATACCTGAACAGTGTAGGTTGCCGATGACTGAGCAGGATA 1199
Query 1201 TTAAGACCGGGAAGGATATGCTAGAGGAGGATTTCGTGAAGAAAAA-CCCTGGGTGGGTT 1259
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1200 TTAAGACCGGGAAGGATATGCTAGAGGAGGATTTCGTGAAGAAAAATCCC-GGGTGGGTC 1258
Query 1260 GAAGAACTTAACCTGATGGTGAAAACAAAGCAGAAGGCTGAGATTCAGGCGTTGAGCTCT 1319
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1259 GAGGAACTTAACCTGATGGTGAAAACGAAGCAAAAGGCTGAGATTCAGGCGTTGAGCTCT 1318
Query 1320 TTTGGTTTCCAGTATTTATCAGAGGTTTACTTGCCCCTGAAACTGCAGCAGCAGGATTGG 1379
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTTGGTTTCCAGTATTTATCGGAAGTTTACTTGCCCCTGAAACTGCAGCAGCAGGATTGG 1378
Query 1380 CTCTGATCATCAGGTTGCTGTCTTCCTGTTCAATTAGAGACACCAACAAGTGCACACTAC 1439
||||||| |||||||| | ||||||| ||||||||| | ||||||||||| || ||||
Sbjct 1379 CTCTGATAATCAGGTT--T--CTTCCTGATCAATTAGATAGACCAACAAGTGTACTCTAC 1434
Query 1440 AGATTTCGAGTTTCTGATAATGTAATTGCTTGTTTCCTAGCATGTGAATAATT 1492
| ||||||| ||| |||||||| |||||| |||||| |||||||||||| |||
Sbjct 1435 AAATTTCGAATTTTTGATAATGCAATTGCCTGTTTCTTAGCATGTGAATTATT 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5