BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487063
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02850.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2307 0.0
> AT5G02850.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:652110-653673 FORWARD LENGTH=1564
Length=1564
Score = 2307 bits (1249), Expect = 0.0
Identities = 1475/1578 (93%), Gaps = 40/1578 (3%)
Strand=Plus/Plus
Query 1 TCTCTTAAATTACCTTGGATTTAAGAGATTCCTTCGCCGTCGGCGAAGATGCTACAGCAT 60
|||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2 TCTCTTTAATTATCTTCGATTTAAGAGATTCTTTCGCCGTCGGCGAAGATGCTACAGCAT 61
Query 61 CAGATCGTACAATCTCCGGCGAGATTAGGGCTAACAGGTCCTGGTTCTCCCTCCGTACAA 120
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 62 CAGATCGTACAATCTCCGGCGAGATTAGGGTTAACAGGTCCTGGCTCTCCTTCCGTACAA 121
Query 121 AATCCAACGCCTACTCGTCATGGCCATCCAACCTCTTCTTCATCTTCCCAATCTCAGCAC 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AATCCGACGCCTACTCGTCATGGCCATCCAACCTCTTCTTCATCTTCCCAATCTCAGCAC 181
Query 181 CAACAGATCCAACAACAACCTAATCTACTCCCTTCCTCCACCGTCGCCGCCGCTTCCTCA 240
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 182 CAACAGATCCAACAACAGCCTAATCTACTTCCTTCCTCCACCGTCGCCGCCGCTTCCTCA 241
Query 241 GCCTCAGCTGCATCGGCTATTTCATCCTCCGCTTTGCTATCTCTCCTTCCGCCATTACCG 300
||||||||| | ||||| ||||||||||||| |||||||| |||||||| |||||||||
Sbjct 242 GCCTCAGCTTCGGCGGCTGTTTCATCCTCCGCCTTGCTATCGCTCCTTCCTCCATTACCG 301
Query 301 CGAGCTCAAGCTCTTCTCCAGCAGATGGCGGTTTTGACGTCTAAGCTCTTCGACGTCTCT 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 302 CGAGCTCAAGCTCTTCTCCAGCAGATGGCGGTTTTGACATCTAAGCTCTTCGACGTCTCT 361
Query 361 CCCAATCGAGCTCTCTGGCTCTCAGCTTTTCGTGGCTCTCTCCCTTCGTTCCTCTCCTCA 420
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 362 CCCAATCGAGCTATCTGGCTCTCAGCTTTCCGTGGCTCTCTCCCTTCGTTCCTCTCCTCA 421
Query 421 CACTCGTTACCACCGCCTCCGCCGCTTGAAAACCCTAATCCTTCATCCACGAAGGAGATC 480
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 422 CACTCGTTACCACCTCCGCCGCCGCTTGAAAACCCTAGTCCTTCATCCACGAAGGAGATC 481
Query 481 CTCTCTCAATTCAATTCCCTCCAGACTCAGCTCTTCGAAGCCGTAACTGAGCTTCAAGAG 540
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 482 CTCTCTCAATTCAATTCCCTCCAGACTCAGCTCTTCGAAGCCGTTACAGAGCTTCAAGAG 541
Query 541 ATCCTCGATCTGCAAGACGCGAAGCAAAAGGTCGCGCGTGAGATCAAATCCAGAGATTCA 600
|||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 542 ATCCTCGATCTGCAAGACGCGAAGCAGAAGGTGGCGCGTGAGATCAAATCCAAAGATTCA 601
Query 601 TCTCTTCTCGCGTTCGCTAACAAACTCAAGGATGCAGAACGTGTTCTCGATATGCTTGTT 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TCTCTTCTCGCTTTCGCTAACAAACTCAAGGATGCAGAACGTGTTCTCGATATGCTTGTT 661
Query 661 GACGACTACTCCGACTATCGCAAACCAAAACGAAGCAAAATTGTGAGTGAAGAAGAAGAA 720
|||||||||||||| || |||||||||||||||||||||| | ||| ||||| || |||
Sbjct 662 GACGACTACTCCGATTACCGCAAACCAAAACGAAGCAAAA-T-TGA-AGAAGATGACGAA 718
Query 721 GACAATGATAATGAGTCTTCTTCTTCTTCGACCACAGTTTCGTCTCAGCTCAAACTAAAG 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 719 GACAATGATAATGAGTCTTCTTCTTCTTCAACCACAGTTTCGTCTCAGCTCAAGTTAAAG 778
Query 781 GACATTTTAGCTTACGCTCATAAGATCAGCTACACCACATTTGCTCCACCGGAATTTGGT 840
||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||| |||
Sbjct 779 GACATATTAGCTTACGCTCACAAGATTAGCTACACCACATTTGCTCCGCCGGAATTCGGT 838
Query 841 GCAGGGCAAGCACCTCTCCGTGGTGCATTACCACCAGCTCCACAAGACGAACAAATGAGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCAGGGCAAGCACCTCTCCGTGGTGCATTACCACCAGCTCCACAAGACGAACAAATGAGA 898
Query 901 GCTTCTCAGCTCTATGCTTTCGCTGATCTTGATATCGGTCTGCCGAAAACAGTAGAAAAC 960
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCTTCCCAGCTCTACACTTTCGCTGATCTTGATATCGGTCTGCCGAAAACAGTAGAAAAC 958
Query 961 ATGGAGAAGAAGGTTGAAGCACTCATTGAGccaccaccaccaccaccaGAAGCTATGGAT 1020
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 959 ATGGAGAAGAAGGTTGAAGCACTGATTGAG---CCACCACCACCACCAGAAGCTATGGAT 1015
Query 1021 ATCTCTGCAATTCATAACCTGCTTCCGCCGAATATCGCAGTTCCTTCAGGATGGAAACCA 1080
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATATCTGCTATTCACAACCTGCTTCCGCCGAATATCGCAGTTCCTTCAGGATGGAAACCA 1075
Query 1081 GGAATGCCGGTCGAATTACCAAGAGATTTACCATTGCCACCTCCTGGATGGAAACCAGGT 1140
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GGAATGCCAGTCGAATTGCCTAGAGATTTACCATTGCCACCTCCTGGATGGAAACCAGGC 1135
Query 1141 GACCCAGTTGTGTTACCGCCATTGGAGTCAATTGCTGCACCTAGAGCGGAGGATCAGCAA 1200
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 1136 GACCCAGTTGTGTTACCGCCACTGGAGTCAATTGCTGCACCTAGAGCAGAGGATCATCAA 1195
Query 1201 CATATGCGACCTCCTCAGGGACTTCACAGACCGCCTGATGTCATACAGGTCCGAGCTGTT 1260
|||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1196 CATATGAGACCTTCTCAGGGACTCCACAGACCGCCTGATGTCATACAGGTCCGAGCTGTT 1255
Query 1261 CAACTTGACATTTTGGAGGATGATGATAGCAGTGATTACAGCAGCGATGATGCAAGCTCA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CAACTTGACATTTTGGAGGATGATGATAGCAGTGATTACAGCAGCGATGATGCAAGCTCA 1315
Query 1321 GATGACGAGGATTAATCAACATTGT-A---AT--T-----G-A---T---G-TT-GACCA 1360
||||| ||||||||||||||||||| | || | | | | | || |||||
Sbjct 1316 GATGATGAGGATTAATCAACATTGTGATTGATGGTTCTCTGTAAGGTAATGATTTGACCA 1375
Query 1361 ATGTTACTGCTAATTCTTGATCAAGTTTGAGTGAAATTTTCTACTTGGTTTCGTTTTGTT 1420
|||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1376 ATGTTACTGCTAATTCTTGATCAAGTTTGA-T----TTT-CTACTTGGTTTCGTTTTGTT 1429
Query 1421 TTAGCAGTGTCTTTATGTGGATAGATGTTAAGTAGTATATGCTTCATCGTTATCAGTATC 1480
| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 1430 T-AGCAGTGCCTTTATGTGGATAGATGTTA-GTA-TAT--GCTTCATCGTTATCAGTATC 1484
Query 1481 TTTGATGTATCAA-GATTGTTTCTTACGAAA-CCCTGGATTCTAATTCAGTTTACAGAGT 1538
||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1485 TTTGATGTATCAAAG-TTGTTTCTTACGAAAACCCTGGATTCTAATTCAGTTTACAGAAT 1543
Query 1539 TATTGGTCATCTTTTTTC 1556
||||||| ||||||||||
Sbjct 1544 TATTGGTTATCTTTTTTC 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5