BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487065
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02870.1 | Symbols: | Ribosomal protein L4/L1 family | chr5... 2233 0.0
AT3G09630.1 | Symbols: | Ribosomal protein L4/L1 family | chr3... 1454 0.0
> AT5G02870.1 | Symbols: | Ribosomal protein L4/L1 family | chr5:657786-659733
FORWARD LENGTH=1475
Length=1475
Score = 2233 bits (1209), Expect = 0.0
Identities = 1367/1443 (95%), Gaps = 11/1443 (1%)
Strand=Plus/Plus
Query 1 ACAGCCTCAC-TCACAAACCCTTCGTTTCCAGCCAAAAAATCGAAAATGGTTGCCTCAGC 59
|||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 ACAGCCTCACTTC-CAAACCCTTCGTTTACAG-CAAAAAATCGAAAATGGTTGCCTCAGC 58
Query 60 CGCCGCACGACCTCTCGTCACCGTCCAAGGCCTTGACGGTGACATGAGCACCGATCAATC 119
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 59 CGCCGCACGACCTCTTGTCACCGTCCAAGGACTTGACGGTGACATGAGCACCGATCAATC 118
Query 120 CACCACCGTCACTTTACCTGACGTCATGACTGCTCCCGTTCGTCCAGACATCGTCAACTT 179
|||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 119 CACCACCGTCACTTTACCAGACGTCATGACTGCTCCAGTTCGACCTGACATTGTCAACTT 178
Query 180 CGTCCACGCCCAAATCTCCAACAATAGCCGTCAGCCTTACGCAGTCTCCAAAAAAGCCGG 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 179 CGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACGCAGTCTCCAAAAAGGCCGG 238
Query 240 TCACCAAACCTCTGCCGAGTCATGGGGAACCGGAAGAGCCGTGTCTCGTATCCCTCGTGT 299
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 239 TCACCAAACCTCCGCCGAGTCCTGGGGAACCGGAAGAGCCGTGTCACGTATCCCTCGTGT 298
Query 300 TCCCGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGTAACATGTGTCGTGGTGG 359
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 TCCTGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGAAACATGTGTCGTGGTGG 358
Query 360 TCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAATGTCAACAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAATGTCAACAT 418
Query 420 GAAGAGACACGCGATTGTTTCTGCAATCGCCGCTACTGCTGTTCCAGCTCTTGTGATGGC 479
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 GAAGAGGCACGCGATTGTTTCTGCAATCGCTGCTACTGCTGTTCCAGCTCTTGTGATGGC 478
Query 480 TCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGTGATTCAGCTGA 539
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 479 TCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGCGACTCAGCTGA 538
Query 540 AGCTGTGGAGAAGACATCAGCTGCGATCAAGGTTTTGAAGCAGATCGGTGCTTACGACGA 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 AGCTGTGGAGAAGACATCAGCTGCGATCAAGGTATTGAAGCAGATCGGTGCTTACGACGA 598
Query 600 TGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATGAGGAACCG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 TGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATGAGGAATCG 658
Query 660 TCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTATGGAACTGAAGGAGCCAAGATTGT 719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 TCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTTTGGAACTGAAGGAGCCAAGATTGT 718
Query 720 TAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCATGTTGAGAGACTTAACTTGTT 779
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 719 GAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCACGTTGAGAGGCTTAACTTGTT 778
Query 780 GAAATTAGCTCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGTCAGCTTTTGA 839
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 GAAATTAGCCCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGTCTGCTTTTGA 838
Query 840 TAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCGTCAGAGAAGAAGAAGGGTTATGT 899
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 839 GAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCATCAGAGAAGAAGAAGGGTTACGT 898
Query 900 CTTGCCTCGTTCGAAGATGTTGAATGCTGATCTTGCCAGGATTATTAACTCCGATGAGGT 959
|||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 899 CTTGCCTCGTGCGAAGATGGTGAATGCTGATCTTGCTAGGATTATTAACTCCGATGAGGT 958
Query 960 ACAGAGTGTGGTGAACCCGATTAAGAA-GGATGCGAAGAGAGCTGTTCTGAAGAAGAATC 1018
||||||||||||||||||||||||| | || | | |||||||| ||||||||||||||||
Sbjct 959 ACAGAGTGTGGTGAACCCGATTAAGGATGGTTCC-AAGAGAGCGGTTCTGAAGAAGAATC 1017
Query 1019 CATTGAAGAACTTTAATGTGATGCTCAAGTTGAATCCTTATGCTAAGACTGCTAAGAGGA 1078
||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||| |
Sbjct 1018 CATTGAAGAACCTTAATGTGATGTTCAAGTTGAATCCTTATGCTAAGACCGCAAAGAGAA 1077
Query 1079 TGTCTCTGTTGGCTGAAGCT-CAAAGGGTTAAGGCGAAGAAGGAGAAGCTCGAGAAGAAG 1137
|||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 1078 TGTCTCTGTTGGCTGAAGCTTCAA-GGGTTAAGGCTAAGAAGGAGAAGCTCGAGAAGAAG 1136
Query 1138 AGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCAAGGCATGGTAC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 AGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCAAGGCTTGGTAT 1196
Query 1198 CAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCAAGTGGCTTGGC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCAAGTGGCTTGGC 1256
Query 1258 GCTAGTCAGTAATGATGCTTTCATCATCGCAAATTCTCTCATATTTAGGCAAAGATTTTG 1317
||||||||||||||||||| || |||||||||| ||||| |||| |||||||||||||||
Sbjct 1257 GCTAGTCAGTAATGATGCTCTCGTCATCGCAAAGTCTCTTATATCTAGGCAAAGATTTTG 1316
Query 1318 GTTATCCGTTTTATGATCTTTATTTGTTAT-GGATTTATCTGAGG-TGTTATGTTGTTGC 1375
||| || | |||||| |||| ||||| || ||||||||||| || | |||||||||||
Sbjct 1317 GTTTTCTGATTTATGTTCTTCGTTTGT-ATTGGATTTATCTG-GGATTTTATGTTGTTGA 1374
Query 1376 GTTGGTAAGAGGATTTTTAAGTACTAAGAACATGTTTTTCAAACTCTTTTCAATCTATTT 1435
|||||||||| |||||||||| |||| || |||||||||||||||||||||||| |||
Sbjct 1375 GTTGGTAAGACGATTTTTAAGAACTATGATGGTGTTTTTCAAACTCTTTTCAATCTGTTT 1434
Query 1436 CCC 1438
|||
Sbjct 1435 CCC 1437
> AT3G09630.1 | Symbols: | Ribosomal protein L4/L1 family | chr3:2953743-2955713
FORWARD LENGTH=1560
Length=1560
Score = 1454 bits (787), Expect = 0.0
Identities = 1116/1275 (88%), Gaps = 22/1275 (2%)
Strand=Plus/Plus
Query 58 GCCGCCGCACGACCTCTCGTCACCGTCCAAGGCCTT-GACGGTGACATGAGCACCGATCA 116
||||| || || |||||||||||| ||||| |||| || ||||||||| |||||||||
Sbjct 80 GCCGCTGCTCGTCCTCTCGTCACCATCCAA-ACCTTGGATGGTGACATGTCCACCGATCA 138
Query 117 ATCCACCACCGTC--ACTTTACCTGACGTCATGACTGCTCCCGTTCGTCCAGACATCGTC 174
|||| |||||||| || || || ||||||||||| || || ||||| |||||||||||
Sbjct 139 ATCCTCCACCGTCGTAC-TT-CCCGACGTCATGACGGCGCCAGTTCGACCAGACATCGTT 196
Query 175 AACTTCGTCCACGCCCAAATCTCCAACAATAGCCGTCAGCCTTACGCAGTCTCCAAAAAA 234
|||||||| |||||||||||||||||||| ||||||||||| ||||| || || || ||
Sbjct 197 AACTTCGTTCACGCCCAAATCTCCAACAACAGCCGTCAGCCATACGCCGTATCGAAGAAG 256
Query 235 GCCGGTCACCAAACCTCTGCCGAGTCATGGGGAACCGGAAGAGCCGTGTCTCGTATCCCT 294
||||||||||| ||||| |||||||| |||||||||||| | ||||||||||||||||||
Sbjct 257 GCCGGTCACCAGACCTCCGCCGAGTCCTGGGGAACCGGACGTGCCGTGTCTCGTATCCCT 316
Query 295 CGTGTTCCCGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGTAACATGTGTCGT 354
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 317 CGTGTTCCCGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCGGTAACATGTGTCGT 376
Query 355 GGTGGTCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAATGTC 414
|||||||||||||| ||||| || ||||||||| | ||||||||||||||||||||||||
Sbjct 377 GGTGGTCGTATGTTCGCTCCAACCAAGATCTGGCGCCGCTGGCACCGTCGTGTCAATGTC 436
Query 415 AACATGAAGAGACACGCGATTGTTTCTGCAATCGCCGCTACTGCTGTTCCAGCTCTTGTG 474
||||||||| | ||||| || || || || ||||| || ||||||||||| || ||||||
Sbjct 437 AACATGAAGCGTCACGCAATCGTCTCAGCTATCGCTGCAACTGCTGTTCCTGCGCTTGTG 496
Query 475 ATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGTGATTCA 534
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 497 ATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTGAGTGACTCC 556
Query 535 GCTGAAGCTGTGGAGAAGACATCAGCTGCGATCAAGGTTTTGAAGCAGATCGGTGCTTAC 594
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 557 GCCGAAGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTTTTGAAACAGATCGGTGCTTAT 616
Query 595 GACGATGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATGAGG 654
|| ||||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 617 GATGATGCTGAGAAGGCAAAGAACAGCATTGGAATCCGTCCTGGTAAAGGTAAAATGAGG 676
Query 655 AACCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTATGGAACTGAAGGAGCCAAG 714
|||||||||||||||||||||||||||||||| || || ||||||||||||||| | |||
Sbjct 677 AACCGTCGTTACATTTCTAGGAAAGGTCCTCTGGTGGTTTATGGAACTGAAGGATCTAAG 736
Query 715 ATTGTTAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCATGTTGAGAGACTTAAC 774
|| ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct 737 ATAGTTAAGGCGTTTAGAAACCTTCCTGGTGTTGAGCTTTGTCATGTGGAGAGGCTTAAT 796
Query 775 TTGTTGAAA-TTAGCTCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGTCAGC 833
|||||||| || ||||||||||||||||||||| |||||||||| ||||| ||||| ||
Sbjct 797 TTGTTGAAGCTT-GCTCCTGGTGGTCACCTTGGTCGGTTTGTGATCTGGACCAAGTCTGC 855
Query 834 TTTTGATAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCGTCAGAGAAGAAGAAGGG 893
||||| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 856 CTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAGAGAAGAAGAAGGG 915
Query 894 TTATGT-CTTGCCTCGTTCGAAGATGTTGAATGCTGATCTTGCCAGGATTATTAACTCCG 952
||||| ||| |||||| | |||||| ||||||||||||||||||||||||| || || |
Sbjct 916 GTATGTGCTT-CCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGATTATCAATTCAG 974
Query 953 ATGAGGTACAGAGTGTGGTGAACCCGATTAAGAAGGATGCGAAGAGAGCTGTTCTGAAGA 1012
||||| | |||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct 975 ATGAGATTCAGAGTGTTGTGAATCCGATCAAGAAGGATGCGAAGAGGGCTGTTCTTAAGA 1034
Query 1013 AGAATCCATTGAAGAA-CTTTAATGTGATGCTCAAGTTGAATCCTTATGCTAAGACTGCT 1071
|||||||||||||||| || ||||||||| | ||||||||||||||||||||||| ||
Sbjct 1035 AGAATCCATTGAAGAATCTC-AATGTGATGTTGAAGTTGAATCCTTATGCTAAGACCGCG 1093
Query 1072 AAGAGGATGTCTCTGTTGGCTGAAGCTCAAAGGGTTAAGGCGAAGAAGGAGAAGCTCGAG 1131
||||||||||| ||||| |||||||| || || |||||||| ||||||||||||||||
Sbjct 1094 AAGAGGATGTCACTGTTAGCTGAAGCACAGAGAGTTAAGGCTAAGAAGGAGAAGCTCGCC 1153
Query 1132 AAGAAGAGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCAAGGCA 1191
|||||||||||| ||| || ||||||||||| || |||||||||||||||||| |
Sbjct 1154 AAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAGCAGGCAAGTCG 1213
Query 1192 TGGTACCAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCAAGTGG 1251
|||||| |||||||||| || |||||||| ||||||||||| |||||||||||||| |||
Sbjct 1214 TGGTACAAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACTTCACCAAATGG 1273
Query 1252 CTTGGCGCTAGTCAGTAATGATGCTT-TCAT-CATCGCAA-A-TTCTCTCATATTT-AGG 1306
|| || ||||| ||||||| || || || | | | | || | || || ||||||| ||
Sbjct 1274 CTCGGTGCTAGCCAGTAATAAT-CTCGTC-TGCTTTGGAACACTT-TC-CATATTTTAGT 1329
Query 1307 CAAA-GATTTTGGTT 1320
|||| ||||||||||
Sbjct 1330 CAAAAGATTTTGGTT 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5